G2178715


Basic Information

Item Value
gene id G2178715
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35009192 ~ 35010170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2490297
cagtacagacagacagtacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacaggacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagtacagacagacagacagtacagatagacagacagacagtacagacagacagacagacatttgtacagacagtatagacatacatacatacagacagacagacagacagacagacagacagacagacagacagacagtacagacagacagtatagacatacatacatacagtacatacattcagtacagacagacagacagacagacagacagacagacagacagacagacagacagacagtacagacagacagacagacggacatttgtacagacagtatagacatacatacatacagtacatacattcagtacagacagacagacagacagacagggacattcacaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtcattttcatcataggtacacttcaactatggcagac
>TU2490299
cagtacagacagacagtacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacaggacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagtacagacagacagacagtacagatagacagacagacagtacagacagacagacagacatttgtacagacagtatagacatacatacagacagacagacagacagacagacagacatacagacagacagacggacatttgtacagacagtatagacatacatacatacagtacatacattcagtacagacagacagacagacagacagggacattcacaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtcattttcatcataggtacacttcaactatggcagac
>TU2490300
cagtacagacagacagtacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacaggacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagtacagacagacagacagtacagatagacagacagacagtacagacagacagacagacatttgtacagacagtatagacatacatacatacagacagacagacagacagacagacagacagacagacagacagacagacagtacagatagacagtacagacagacagacagtacagatagacagacagacagtacagacagacagacggacatttgtacagacagtatagacatacatacagacagacagacagacagacagacagacagacagacagacagacagacagacatacatacatacatttgtacagacagacaaacagacagacagacagacagacagtacagacagacagacagacggacatttgtacagacagtatagacatacatacagacagacagacagacagacagacagacagacagacagacagacagacagacatacatacatacatttgtacagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2490297 False 597 lncRNA 0.44 3 35009192 35010170
TU2490299 False 468 lncRNA 0.44 4 35009192 35010170
TU2490300 True 623 lncRNA 0.45 2 35009371 35010170

Neighbor

gene id symbol gene type direction distance location
LOC110510171 NA coding downstream 29527 34965129 ~ 34979665 (-)
LOC110510165 atg4a coding downstream 146689 34851196 ~ 34862503 (-)
LOC110510161 LOC106563678 coding downstream 194253 34809871 ~ 34814939 (-)
LOC110510156 LOC106563681 coding downstream 281960 34715939 ~ 34727232 (-)
leap-2b leap-2b coding downstream 323421 34684417 ~ 34685804 (-)
LOC118945291 NA coding upstream 339195 35349365 ~ 35368562 (-)
LOC110510176 LOC106563749 coding upstream 389166 35399336 ~ 35421812 (-)
LOC110510173 LOC106563748 coding upstream 411796 35421966 ~ 35454525 (-)
ik ik coding upstream 485115 35495285 ~ 35505716 (-)
LOC110510180 tcof coding upstream 496877 35507047 ~ 35524067 (-)
G2178667 NA non-coding downstream 79531 34925642 ~ 34929661 (-)
G2178463 NA non-coding downstream 108699 34900276 ~ 34900493 (-)
G2178462 NA non-coding downstream 109343 34899604 ~ 34899849 (-)
G2178458 NA non-coding downstream 112725 34896153 ~ 34896467 (-)
G2178444 LOC106602948 non-coding downstream 134262 34874436 ~ 34874930 (-)
G2178733 NA non-coding upstream 73530 35083700 ~ 35084289 (-)
G2178783 NA non-coding upstream 154722 35164892 ~ 35202930 (-)
G2178832 NA non-coding upstream 220286 35230456 ~ 35230691 (-)
G2178878 NA non-coding upstream 282257 35292427 ~ 35292651 (-)
G2179137 NA non-coding upstream 311788 35321958 ~ 35322371 (-)
G2178372 NA other downstream 199889 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 667379 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 861873 34092047 ~ 34216247 (-)
G2177695 NA other downstream 1496866 33511296 ~ 33512326 (-)
G2176363 NA other downstream 2364620 32643402 ~ 32644572 (-)
G2179862 NA other upstream 951814 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 1494303 36499597 ~ 36596534 (-)
G2180120 NA other upstream 1496370 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 1966984 36975909 ~ 36979761 (-)
G2180587 NA other upstream 1971787 36981957 ~ 36982709 (-)

Expression


Co-expression Network