G2179330


Basic Information

Item Value
gene id G2179330
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35778751 ~ 35782018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2490997
actctccttctcatcaagaaaaccgttacacagaccagctagatctactgaatctattatactatgacagaccagctagatatactgtctctattatattatgaccgaacagctagatctactgtctctattatattatgacagaccagctagatctgctgtctctattaaattatgacagaccaactagatatactgcctctattatattatgacagaccagctatatctgctgtctttattttattatgagagaccagctatatctgctgtctctattatattatgacagaccagctagatctactgcctctgttcaattatgacagaccagctagatctactgtctctattatattatgacagaccagcgagatatactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagatagatctgctgtctctattatattatgacagaccagcgagatatactgtctcttttatattaagacagaccagctagatatactgtgtttattatattatgacagaccagctagatctactgtctctattgtattatgacagaacagctagatctactgtctctaggtctctattatattatgacagaccagctagatctaccgtctctattatattatgacagacaagctagatctactgtctctattacaatatgacagaccagctagatttgctgtctctattatattatgacagaccagctagatctactgtctctattataatatgacagaccagctagatatactgtctctattatattatgacagaacagctagatctactgtctctattatattatgacagaccagctagatctgctgtctctattaaattatgacagaccaactagatatactgcctctattatattatgacagaccagctatatctgctgtctttattttattatgacagatcagctagatctactgtctctattatattatgacagaccagctagatctgctgtctgtattatattatgacagaccagctagatctactgtctctattgtattattacagaacagctagatctactgtctctagatctctattatattattacagacctgctagatctactgtctctattatattatcatataatctctattatattatgacagacctgctagctctgctgtctgtattatattatgacagaccaggtagatctactgtctctattatactgtgacagaccagctagatatactgtctctattatattatgacagaccagctagatctgctgtctctattatattatgacagaccagctatatctactgtctctattatactatgacagaccagctagatatactgtctctattatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctgttatattatgacagaccagctagatctactgtctctattatattatgacagaccagctagatctactgtctctgttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2490997 True 1542 lncRNA 0.35 2 35778751 35782018

Neighbor

gene id symbol gene type direction distance location
LOC110510180 tcof coding downstream 254684 35507047 ~ 35524067 (-)
ik ik coding downstream 273035 35495285 ~ 35505716 (-)
LOC110510173 LOC106563748 coding downstream 324226 35421966 ~ 35454525 (-)
LOC110510176 LOC106563749 coding downstream 356939 35399336 ~ 35421812 (-)
LOC118945291 NA coding downstream 410189 35349365 ~ 35368562 (-)
LOC110510228 LOC106563789 coding upstream 24445 35804621 ~ 35817492 (-)
LOC110510227 LOC106563788 coding upstream 59125 35841143 ~ 35871517 (-)
LOC110510226 NA coding upstream 105973 35887991 ~ 35892734 (-)
LOC118945701 NA coding upstream 107299 35889317 ~ 35889390 (-)
LOC118945702 NA coding upstream 107567 35889585 ~ 35889659 (-)
G2179356 NA non-coding downstream 6521 35763005 ~ 35772230 (-)
G2179348 NA non-coding downstream 29855 35728653 ~ 35748896 (-)
G2179340 NA non-coding downstream 70426 35707797 ~ 35708325 (-)
G2179290 NA non-coding downstream 120137 35658398 ~ 35658614 (-)
G2179286 LOC106602935 non-coding downstream 123477 35652049 ~ 35655274 (-)
G2179376 NA non-coding upstream 19316 35801334 ~ 35801569 (-)
G2179379 NA non-coding upstream 21326 35803344 ~ 35803594 (-)
G2179806 NA non-coding upstream 56380 35838398 ~ 35839853 (-)
G2179829 NA non-coding upstream 77982 35860000 ~ 35860404 (-)
G2178372 NA other downstream 969448 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1436938 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 1631432 34092047 ~ 34216247 (-)
G2177695 NA other downstream 2266425 33511296 ~ 33512326 (-)
G2176363 NA other downstream 3134179 32643402 ~ 32644572 (-)
G2179862 NA other upstream 179966 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 722455 36499597 ~ 36596534 (-)
G2180120 NA other upstream 724522 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 1195136 36975909 ~ 36979761 (-)
G2180587 NA other upstream 1199939 36981957 ~ 36982709 (-)

Expression


Co-expression Network