G2179798


Basic Information

Item Value
gene id G2179798
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35888982 ~ 35892698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2491538
cgttCTTCACTCCGTTGAGTCCTGTGGATGATTTGCTGAAGCAGAACGTCCTCTGCATTATGGAAGATGATATGTTAGAAATGCTTCTTTAGTATCTACTTATTGGTATAGTGATGTACCTTAAGTCTTGCCCTGGTTATTAGTTAAGTAGTTAACAGTAGCTACTTTGGAGCATGGGGACTTGCAGAACCATGCACGTGGGCAACTCAACGTTTTAAAACCATGCCGTGCTGTCTGTATCTGGCCTATGGACTGAACTGAGGCCGTACTCGCCAATGACTGCGCACATGGCAGgcGCTGCCCGGGTGACTTGATTGCAAGGAGACTTAACCTCGAAAGGTGTGGAACTGAATCAATGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGCAACAGAGCTGTGGATGGTGTGGAGGCATCTGAAAAGATTTGGGAGACTACTCCCTCGTGGCCTGTGGCTGAACCATACACATGAAGCCATACACACGGCAGGAGACTCCACCCCAAAGTACTTAATGGTGGAGACATCACCTCAAAAGGTGTGAAGCTGCCCCAATGAGTTGATGGCATGGAGACTTCATCTGCCAAGGTGTGGAACTGACACAAGGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGGAACTGAACCAACGCTGTGAAAGGTAGGCTGCCTTTGCATAATATCCCTGCAGTCTCAGAACTGGATATGTTGACTGGGGTGTTCCTCATCTGATGCCCCTTGCTGATTTTCAGCCCCAACCTACCCTTCAGGTGCACAGTCACCCGATCACAATTTTGAAGTGCCTTTCCTATCGTCTTGAGTTTTGTTCAGTGGTGATATTTAGTTCTGAACTTAGAAGTGGTGTTTATGGGCCCTCACTTTGAGTGGGATATTTATAAAATGTGTAAATGTGACACTTCACCTATTTTAAGATGTAAAAAAGTATAACTGTATATGCTGAATAATTAAAGTTTTTAATGT
>TU2491539
cgttCTTCACTCCGTTGAGTCCTGTGGATGATTTGCTGAAGCAGAACGTCCTCTGCATTATGGAAGATGATATGTTAGAAATGCTTCTTTAGTATCTACTTATTGGTATAGTGATGTACCTTAAGTCTTGCCCTGGTTATTAGTTAAGTAGTTAACAGTAGCTACTTTGGAGCATGGGGACTTGCAGAACCATGCACGTGGGCAACTCAACGTTTTAAAACCATGCCGTGCTGTCTGTATCTGGCCTATGGACTGAACTGAGGCCGTACTCGCCAATGACTGCGCACATGGCAGgcGCTGCCCGGGTGACTTGATTGCAAGGAGACTTAACCTCGAAAGGTGTGGAACTGAATCAATGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGCAACAGAGCTGTGGATGGTGTGGAGGCATCTGAAAAGATTTGGGAGACTACTCCCTCGTGGCCTGTGGCTGAACCATACACATGAAGCCATACACACGGCAGGAGACTCCACCCCAAAGTACTTAATGGTGGAGACATCACCTCAAAAGGTGTGAAGCTGCCCCAATGAGTTGATGGCATGGAGACTTCATCTGCCAAGGTGTGGAACTGACACAAGGATGTGGCTGGAGTGGAGACATCATCTTTAAAGGTGTGGAACTGAACCAACGCTGTGAAAGGTAGGCTGCCTTTGCATAATATCCCTGCAGTCTCAGAACTGGATATGTTGACTGGGGTAAGGCTTTTCACCCTGGCAACAAGCTGCCTTGTGGTCAGCTGGAAGGAATAATTGCTTATTTATGCTATGATGAATACTAAACTGAAACAGCTGGAATTACCGGCAGATTGTATAGTGGTGACATTCGGTTTTCTGAGACATTAGTACACGcttcaccattttttttttacttcccaTTTATTCAGCTAATGGCAGTCGTTTTGTTTCAGGTGTTCCTCATCTGATGCCCCTTGCTGATTTTCAGCCCCAACCTACCCTTCAGGTGCACAGTCACCCGATCACAATTTTGAAGTGCCTTTCCTATCGTCTTGAGTTTTGTTCAGTGGTGATATTTAGTTCTGAACTTAGAAGTGGTGTTTATGGGCCCTCACTTTGAGTGGGATATTTATAAAATGTGTAAATGTGACACTTCACCTATTTTAAGATGTAAAAAAGTATAACTGTATATGCTGAATAATTAAAGTTTTTAATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2491538 False 993 lncRNA 0.45 12 35888982 35892698
TU2491539 True 1205 lncRNA 0.44 11 35888982 35892698

Neighbor

gene id symbol gene type direction distance location
LOC110510227 LOC106563788 coding downstream 17465 35841143 ~ 35871517 (-)
LOC110510228 LOC106563789 coding downstream 71490 35804621 ~ 35817492 (-)
LOC110510180 tcof coding downstream 364915 35507047 ~ 35524067 (-)
ik ik coding downstream 383266 35495285 ~ 35505716 (-)
LOC110510173 LOC106563748 coding downstream 434457 35421966 ~ 35454525 (-)
supt6h LOC106602907 coding upstream 18330 35911028 ~ 35950373 (-)
LOC118945335 NA coding upstream 42662 35935360 ~ 35936556 (-)
LOC118945336 NA coding upstream 44046 35936744 ~ 35937921 (-)
LOC110509452 LOC106563653 coding upstream 76758 35969456 ~ 36032625 (-)
nf2b LOC106563816 coding upstream 232317 36125015 ~ 36147223 (-)
G2179829 NA non-coding downstream 28578 35860000 ~ 35860404 (-)
G2179806 NA non-coding downstream 49129 35838398 ~ 35839853 (-)
G2179379 NA non-coding downstream 85388 35803344 ~ 35803594 (-)
G2179376 NA non-coding downstream 87413 35801334 ~ 35801569 (-)
G2179847 NA non-coding upstream 4527 35897225 ~ 35897989 (-)
G2179850 NA non-coding upstream 21012 35913710 ~ 35914311 (-)
G2179856 NA non-coding upstream 60706 35953404 ~ 35955677 (-)
G2179861 NA non-coding upstream 68506 35961204 ~ 35962276 (-)
G2179902 NA non-coding upstream 146705 36039403 ~ 36096507 (-)
G2178372 NA other downstream 1079679 34792330 ~ 34809382 (-)
LOC110510135 LOC106563696 other downstream 1547169 34338911 ~ 34342460 (-)
G2177991 cfb other downstream 1741663 34092047 ~ 34216247 (-)
G2177695 NA other downstream 2376656 33511296 ~ 33512326 (-)
G2176363 NA other downstream 3244410 32643402 ~ 32644572 (-)
G2179862 NA other upstream 69286 35961984 ~ 35962832 (-)
LOC110510209 LOC106563761 other upstream 611775 36499597 ~ 36596534 (-)
G2180120 NA other upstream 613842 36506540 ~ 36507120 (-)
LOC110509384 NA other upstream 1084456 36975909 ~ 36979761 (-)
G2180587 NA other upstream 1089259 36981957 ~ 36982709 (-)

Expression


Co-expression Network