G2179454 (LOC106602907)



Basic Information


Item Value
gene id G2179454
gene name LOC106602907
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35912490 ~ 35925031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2491143
gaagtggTTAAAACGAAGCACTATTTACACATTGCGGCCAACAGCAGCAGAGAAAGAACATTCTACACCTCATTATTCACTTCACATCTCTCCAGTGTGACAAAGACCAACGATGGATCTTTCTGCCACAACAAGCTTCCTCAGGATCACCTAGGTGGTTGCTACACACTGGCAGTGGATGAGGTTACCTTCATCTGACCCCAATACAAAACCATTGGACCATCGGTAAAGCAATGCTAAAAATCCACTCACGTGATAGGCTGAGGAGCTGCCTCCCCCACCCCCACTGCTGCCCCCGGTGTAACCGTATTGGCTGGAGTTCCACTGGGCAGGCGTAGTGTTAGCGTTCTGGCCCTGCCCCTGCCCCGTCACCGCGGCGATGGCACTGAACATCTGAGAGGTCATGTTGCGTGGGAGAGCGCTGACCGCTCGCGTCAGGTctGCGATGTTGATGTTAGCTGGTGTAGCGTTGACAGAGGCAGGTGTCCGTGTTCGACTGCTACTGCTGGGGGTGATGCCTGGTACCGGTTCCTGGAAGTGGTCTTTGAACCAGCGGAACAGTCCGTTAACGGTGGGGAACATCTGGGAGCGGTACCGGAAGCCGTCAGGAGAGATGGTCACATACtcaacaCGTGGTTTGCCACGAGGCTGGTATCCCAGTATGAACTTCCCTGGCAGGTCTTTACAGGCTGAGACAAAGTAGGGTATGAACGTAGGCTTCTCCTTCTTAGACCTGATCAACAACTCCTCCATTTtCTTCCTGTCCCCTCCGTTACAGTCCTGGAAGTACTTGTGTCCCAGCAGGTCACGAGCGAACGCTGCCATTGGCTGAATATAACGAGCTGTGATCTCATCAAGATCCTCAAActcCTCAGTGTTGATCCAGAGTGTGTGTCCCAGGCTGAAGGCGTTCTCCTTGccctcctctctcacatcaacatGCTGGTAGATGCCGTCAGCTACCTTCCAGGTGACAGTAAGGTGGTTCTCTCCCTTGCTGCTGGGCCTGATAACAACATCTCCCTGGTCCATGGACTCCATCATCTTCTCAGCCTGCTTGAAGTTGATGTTGTGGAAGGATGGGTGGGCAATCACACGTTTTATATAggTGGTTCTCTGCTGTTTCTTCTTGCGTTCCTCCTCTGTCTTGGTGTCCTCTGTCTCCGTGTCGAAGTCGTAGTAACTGTCTTTAGGGAGCTTCCACTCGTTGTTTTTATCCATCAGGTCAGACGTACGACATGTCAGGTCCACGTTGAACTTCTCAATGTCAATCTTCATGATGCGACAGTGTACCGTCATACCCACCTTCACCCTCTCCTCAGGGTGTTTGACCACCTTGTCACTGAGGAACTTGGTGGGGATGAAGCCCTGGACACCGTTGTCCATCCGAGCCCTCACACCTATAGCCTGGCCAGGACACGAACCACTGTCAAAATGGTTCCACacctagcagagagagagaaaggggggaaagagagagggagag

Function


NR:

description
transcription elongation factor SPT6-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2491143 True 1486 TUCP 0.53 9 35912490 35925031

Neighbor


gene id symbol gene type direction distance location
rab34b LOC106563803 coding upstream 12547 35892839 ~ 35899943 (+)
LOC118945339 LOC106563737 coding upstream 196179 35715418 ~ 35716311 (+)
LOC110509382 LOC106563739 coding upstream 204420 35704046 ~ 35708070 (+)
camk2a LOC106563741 coding upstream 257210 35556740 ~ 35655280 (+)
arsib LOC106602937 coding upstream 376187 35528171 ~ 35536303 (+)
sdf2 LOC106563785 coding downstream 25558 35950589 ~ 35955683 (+)
LOC118945347 NA coding downstream 36178 35961209 ~ 35962158 (+)
mettl27 wbscr27 coding downstream 220908 36145939 ~ 36158125 (+)
LOC100499582 LOC100499582 coding downstream 235595 36160626 ~ 36182761 (+)
LOC110509451 NA coding downstream 271830 36196861 ~ 36198844 (+)
G2179400 NA non-coding upstream 1005 35910224 ~ 35911485 (+)
G2179381 LOC106563789 non-coding upstream 101088 35807175 ~ 35811402 (+)
G2179372 NA non-coding upstream 112025 35799317 ~ 35800465 (+)
G2179125 NA non-coding upstream 122828 35786367 ~ 35789662 (+)
G2179127 NA non-coding upstream 131673 35776161 ~ 35780817 (+)
G2179403 LOC105029563 non-coding downstream 471 35925502 ~ 35927021 (+)
G2179404 LOC107603297 non-coding downstream 4684 35929715 ~ 35933632 (+)
G2179477 NA non-coding downstream 44738 35969769 ~ 35973034 (+)
G2179502 NA non-coding downstream 93553 36018584 ~ 36051264 (+)
G2179528 NA non-coding downstream 158937 36083968 ~ 36085378 (+)
G2179418 NA other upstream 56028 35851654 ~ 35856462 (+)
ndufa2 ndua2 other upstream 405611 35505848 ~ 35507048 (+)
LOC110510159 LOC106563679 other upstream 1086945 34784319 ~ 34825545 (+)
G2177424 NA other upstream 1451721 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 1680307 34227307 ~ 34236487 (+)
G2180218 LOC106563757 other downstream 753540 36678571 ~ 36680297 (+)
G2180378 NA other downstream 1057315 36982346 ~ 36982614 (+)
G2180382 NA other downstream 1116692 37041723 ~ 37042185 (+)
G2180811 NA other downstream 1492386 37417417 ~ 37468092 (+)
G2180897 NA other downstream 1735556 37660587 ~ 37662215 (+)

Expression



Co-expression Network