G2180218 (LOC106563757)


Basic Information

Item Value
gene id G2180218
gene name LOC106563757
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36678571 ~ 36680297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2492058
ACATTATATTGTACCCCGGTTCTCTTGTATTGAGTGAATGGCTGCATTATAGTGTGTTTACAAACCGCTTAATACTGTACTAACCTTGCTTCAGCAATTCTCACCATCTACTGTGTGATCCTACAGTACGAGTGTGTTCTTACCGTTGTTCTTGTCGGAGCGGTGTGGATGGCAGTTGACAGCGTTGGGCTCTCCATGTGTCGCCCAGCGGGTGTGAGCAATGCCAAAGTGTGTGTCCAGCTCAATGTCCAGGTCAATGGAGTCGTTCTTGTAGAGCTCCTCATCCAGAGCCTTGACCTTCCCCCTCTTCTTGATCAGGCAAATGTTGACGTTGTCACCATTGTCATTTTTCCTAGGGCCATCCACTCCGACACctgCAGAGTCATATCCCCTGTACTCAAGTCTCTGCAGTCCCTTCACCAGTGTGTCAAAGATCTCCTTCCTTGTCCG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2492058 True 450 TUCP 0.49 3 36678571 36680297

Neighbor

gene id symbol gene type direction distance location
LOC118945292 NA coding upstream 34420 36637911 ~ 36644151 (+)
LOC110510207 LOC106563759 coding upstream 43163 36614866 ~ 36635408 (+)
LOC118945346 NA coding upstream 178946 36487463 ~ 36499625 (+)
LOC118945345 NA coding upstream 223037 36451022 ~ 36455534 (+)
LOC110510213 NA coding upstream 228251 36447884 ~ 36450338 (+)
LOC110510201 LOC106563753 coding downstream 189296 36869593 ~ 36871603 (+)
arl3l1 LOC106563754 coding downstream 367916 37048213 ~ 37051629 (+)
LOC110510196 LOC106563728 coding downstream 373376 37053673 ~ 37059512 (+)
LOC110510194 LOC106563726 coding downstream 393630 37073927 ~ 37211008 (+)
rs14 LOC100194652 coding downstream 537247 37217544 ~ 37220508 (+)
G2180191 NA non-coding upstream 54442 36623893 ~ 36624129 (+)
G2180176 NA non-coding upstream 76085 36602197 ~ 36602486 (+)
G2179790 NA non-coding upstream 91473 36585488 ~ 36587098 (+)
G2179748 NA non-coding upstream 188060 36490278 ~ 36490511 (+)
G2179735 LOC106563776 non-coding upstream 201258 36476200 ~ 36477313 (+)
G2180205 LOC106563756 non-coding downstream 8321 36688618 ~ 36690914 (+)
G2180225 NA non-coding downstream 20496 36700793 ~ 36700993 (+)
G2180211 LOC106563762 non-coding downstream 25590 36705887 ~ 36710264 (+)
G2180237 NA non-coding downstream 49916 36730213 ~ 36735359 (+)
G2180245 LOC106563724 non-coding downstream 70286 36750583 ~ 36751867 (+)
G2179454 LOC106602907 other upstream 753540 35912490 ~ 35925031 (+)
G2179418 NA other upstream 822109 35851654 ~ 35856462 (+)
ndufa2 ndua2 other upstream 1171692 35505848 ~ 35507048 (+)
LOC110510159 LOC106563679 other upstream 1853026 34784319 ~ 34825545 (+)
G2177424 NA other upstream 2217802 34359624 ~ 34460769 (+)
G2180378 NA other downstream 302049 36982346 ~ 36982614 (+)
G2180382 NA other downstream 361426 37041723 ~ 37042185 (+)
G2180811 NA other downstream 737120 37417417 ~ 37468092 (+)
G2180897 NA other downstream 980290 37660587 ~ 37662215 (+)
G2180928 NA other downstream 1024851 37705148 ~ 37705729 (+)

Expression


Co-expression Network