G2181157


Basic Information

Item Value
gene id G2181157
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37207572 ~ 37210952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2493174
caacaataaaaaaaatattaacaaTTGGTTGATTGTACAGTCCAGATGATTATTTCCTTATAGCTAATTAACAATTACTACTCATGAATTGTCATACAGAATCTTTGAAAGTACAACACTAGGACATTTGCTGGGGTGGGGTAAAGAAGGAACAGCCCAGACATGAGATGTGCTGGGCTCATCTCCTGACTGTAATGTATAGGCTGGAACAACAACACCCTCCCTGATACTTGGAACCAGAACACTTGTACCACATATTGCATTGTAAAATGGCTCAAGTCACAGGAAGTTGTAAAACGGCTCAAGACAAAAAGGAAACGTGAATATATTACAGCTCCTCGAGCAAATTGAAATGAGAGCAGCATTTGTGCATCCGTGTATCACCACACAGGGTGCATGATTCAGTACCTTACATACAATTAATCTAGAATGGACTCGTAAGTCCACACTTCCTTACAAGAGTCCAAGTAATACAAAATAGAAAATGGAGCCCTGCAAAATTCCTACCACAAACAAGGACTGTTCTCCTTAACAGGAAAGTTGTAGCAGAACCTTCTTCTAACACCTCGTGTTGAGGAATAAATACAGTGCTTCTGGGAGAGAACGGATTCAGAGGACATCGTGTCTGTACATACTGGAACTGTAATACAATAAAGAAATGTCATTAAACCCCCATATATGTTTAGATGCTTTGTATCTGTATAGCAACTAACAGATGAAACGATGCGAGTTCACATTCCTCTAACCGTGACTAATACCTGGAGAAAAGAAAGCCCTGTGTGTCCTGTACAGAAAACACCAGCTCTTCAGAATGTTTCATTTTACAGCATCAAAATCCAATTCCACCTCCTTTCATTTTCGCCCAAGTCTTTGCAGAACACTAAAACTCTCCTGATTGGACTCTTTGAAATGAGCTAGGACAACAAGCTGTGGTGATAAATAAAGCGCGAGGATGACGGGACAGAGTGTGAACCTCTAAGAGCCATCATACAGGGACAGATAAGGACCACTTCTTACAGGCGTCCATTTACACTATCAACTGATCCAGTAGGCTTCGGTTCAAAGGGCATACTAAATCAACTTCACCACTGCAGCTAAATGCTGCCAAGCTTAGAGACATGTCGCTGTTGACTGACGATCCTCAACATCCTGTGTTGGATTTAGCATGTGGCCAAGTCATTCTACTGTAGGTGAAAGGGGAGACTGTGATGTCTGTTAACTAGGACATTATGGCTAAGGGAACCAGTAGACTTCCTCAGTGGAGTAAATCAACAGATAACCTTCCATTCTATTCTCTCACATAGCCCAAGTTTACAGGAACAGTAAGAGGAACAAATCAGGTGGGGATTTAGCTTGAGTTGAGTTGGGAAAGACCAGGAGTCCTTACCTCATTAATAACATATAGATGTACGGGCTACCTGACTCAGGGATGGAGAACTCTGGCGATCCCTTCCATCTCCACTGAGTTGGGGAGACCTGCTTTTATTTTTGTTGTACTTTACACGTGGAATGATCTACAATACACTTTAAAATGGGAGgaattggtgcctctagggcaggcctgggcaattccaGCGGTTGTTAGGGGACTTTTTTTACTGGAGAATGTGTCAGTTTACTTGacgtgtattgttgtgtatatgaatgtgtCATTTAAGGTGCatattgtattttgatgtgtatTGTTGTGCTAAACAAGGCTCGTCTGTTaaatagaccttggtctcagcatcgactccctgtcaaaataaacgttaaaataaaaatgtagtgCTTAATGTTTTTAATCAATAATTCAAAACTTAATTTAGTCTTAAATTGGTAAGGCATTTGATAAGAATGAGAAGTGCAAATATAAGAGGCGCATTACTGCAaatttacagatgtaggatcttaatttgagccagaaaAGAATCCGTCAGcaataggaaatgtgaattattatgtggattataacattaacctgctgtcaaaataaatgttaaaaaaacCCAGTCAACATCATGCTCCACTTGCTCTACCATCACTAGtggaaacaaagagatctgctcGGTACAGTAACACATCGGATGGCGATGATGATGATGCGCATCTCCTCAGTGATAAATTGTCTACCTGAAAGCTATTTAACATGCAGCTACATTTCTCATGTCACATTTATGTTCAGTTTGCAGTGTACTCTACAGACATGGTAGGATGGTATTTAGGAATGGGTTTCAATATTTAATTATTAAAGGAAGTTACAACCAAGGACAAGCGGGAACATTCCACTGACCAAGGCAAGGCCAGCTTGTCTCGTATATCATTATGGATTTCACTTTTTTTAATCCACTGTGAATTCATTCAATTGAAGGTCTCAGACAACCAAATGTAATTTGAGTTGATAAAGGTCAAGGGTCAGTGTGGTCTGTGGTAGCAATTACATGGGCTCCAGTTAGGTTTTCAGATGAACACAGATTAAAAACATGGAACAGTTAAAAAGAACATACAAGGCTCGACAGATGCGTTGTGCAACCACAACACCTCAGAAACAAATACAGACATCCAGCAGTATATGAGtgttaattatgaaaatataaatTCAGAAATACTTTCAAATGAACATTCCACTCTGGCACTTGAATATCCATTATTGGCTAATGTATTGTTCATGACAGGCACAGAGAAATGACGTCGTCTtccttgtctgtctctgtctgtctgagagagTGCAAACTTCAGTGATGGAACAATAACATCAGTCCCCGTTGAGggatccctccctcttctctctttgcCCCAGCGTCATTCTCTCTGAGAAGGAAGTAGAACAATCCTAAACTCAGTTCATGTCTCTCCTTCacctctgcctcttctccctcctgaGTGCCCACACCCCATGCTAGGGTCCCTGGGGGCCACTGGGAACAGCTGGGCTGACTTGGCATGGGGGGGCCTGTCTCTCATGCCTTCCTCAGCTCCTGGTCAGTCCGCATGGCGGTGAATAGCTGGAGCCGAGGGGCGAGCACGTGCATCCCCCTCTGTGGGAGACAGGAGGGTCAGGTTGGGGTGGTGTCTCTGTCCTCGTGTCCACGGCCGTGCTGAGGCTACCTGGTGTGGAGCAGCTCCTCCCTGAGCCAGCTGGGCAGAGGCTGGCCCATCTTATAGAGCAGCTTGGACAACTCTATGTTGTTGTCCCTGTAGTGCTCCCTAAGAA

Function

NR:

description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2493174 True 3196 lncRNA 0.43 2 37207572 37210952

Neighbor

gene id symbol gene type direction distance location
LOC110510195 LOC106563727 coding downstream 134809 37059194 ~ 37072763 (-)
LOC110509384 NA coding downstream 229896 36975909 ~ 36979761 (-)
LOC110510199 NA coding downstream 245314 36952836 ~ 36962258 (-)
LOC110510200 LOC106563752 coding downstream 257450 36935309 ~ 36950122 (-)
LOC118945293 NA coding downstream 272238 36930273 ~ 36935334 (-)
LOC110510193 LOC106563731 coding upstream 24353 37234793 ~ 37241163 (-)
LOC110510188 LOC106563734 coding upstream 73416 37284368 ~ 37296541 (-)
LOC100136950 m-csfr coding upstream 93247 37304199 ~ 37314162 (-)
LOC118936394 NA coding upstream 106911 37317863 ~ 37318817 (-)
LOC110509442 NA coding upstream 111721 37322235 ~ 37331174 (-)
G2181151 NA non-coding downstream 5796 37200997 ~ 37201776 (-)
G2181060 NA non-coding downstream 95872 37097858 ~ 37111700 (-)
G2181041 NA non-coding downstream 136051 37071281 ~ 37071521 (-)
G2180600 NA non-coding downstream 156950 37048291 ~ 37050622 (-)
G2180598 NA non-coding downstream 160033 37047287 ~ 37047539 (-)
G2181158 NA non-coding upstream 5235 37216187 ~ 37216460 (-)
G2181100 LOC100194652 non-coding upstream 7980 37218932 ~ 37220513 (-)
G2181162 NA non-coding upstream 10943 37221895 ~ 37222110 (-)
G2181182 NA non-coding upstream 65387 37276339 ~ 37276680 (-)
G2180587 NA other downstream 224863 36981957 ~ 36982709 (-)
LOC110510209 LOC106563761 other downstream 611199 36499597 ~ 36596534 (-)
G2180120 NA other downstream 700452 36506540 ~ 36507120 (-)
G2179862 NA other downstream 1244740 35961984 ~ 35962832 (-)
G2181143 LOC100136155 other upstream 21917 37232869 ~ 37233899 (-)
nsrp1 nsrp1 other upstream 272696 37482837 ~ 37498898 (-)
G2181304 NA other upstream 325713 37536665 ~ 37538240 (-)
G2181315 NA other upstream 569630 37780582 ~ 37787673 (-)

Expression


Co-expression Network