G2182477


Basic Information

Item Value
gene id G2182477
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 38883172 ~ 38884568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2494953
TGCCTCCATGTGTGACTGACTACCTTGAGTAGTTTTTGAGGGACTTTGCAGGGAGGCATAGGGGATTACCTGCAGCAGGACGGCCCCCAGTGTATGGGCGCCGAGGGGTGTGGTGCTCCCCCAGCAGCTCTCTATTAGGTTTTCTCTGTACTTTTGgtggtccaccttccctgtggccgACATGGGTGCTGTATGGACATGGACGTCTCGTTTGTcatgccactttactgccagTTGTTGAACGTTCTCATTGGAACTCCACCTCCCCTCTGCATCTTCCTGTATCCGAATGCCGACATCCCCTTCCTGTTCGACCTGACCGTGCTACAGGCCCCTGTGCTGTTGGAGAACAGATGCTGAAAAGGTGTGGGACTACTGTACCAATTGTCCACATACAGAGTGTGTCCcttgatgaggatgatgaggagcCAGCATGGTTATCACCGTGGACACGGACACCCCAAGCCCCTCATAATGTTGGATGTCAGTGGTAGACCAGGTGTAGACTATAATATCCTGGACAAATCCTACTTCGCACATGACAAAGAACATGACCCCAAACCTGTGCCTTTTGGAGGGAATATATTGACGGAACGCCAGCCTACCCTTCCATAACATCAGGGACTCATCAATGCATAGATCATTGTATGGCACAAAGACCCGACCAAATGCTGATGTCAGGCTGGTAAGAACTGTTTTGTGTAACGGGTAATTTAGTGTAATGGGTCATTTATGTtggcagtagcattgttgacGAAATGCAGGCATCACAGCAGAACTAGGAAGCGGTCTTGGGAAAAGAGGTTGGCAAAGAAGGAAAttgcaaacataggatctgtgctccagtattctcttagggagttTTTCTTAACTATTCCCATGAGAAGGATTGTCAGCAGGAAGGTATACATTTGACTAATCTATTGGaagacattgctaatgctacagcttagctcactagctacatacataaacaacaatacttgaatggctcagagtgggagtgagaggatACGTGATTGACTGCCTGCACACGCCACTTGTATCAATAAATCAttatcagaaaa
>TU2494954
TGCCTCCATGTGTGACTGACTACCTTGAGTAGTTTTTGAGGGACTTTGCAGGGAGGCATAGGGGATTACCTGCAGCAGGACGGCCCCCAGTGTATGGGCGCCGAGGGGTGTGGTGCTCCCCCAGCAGCTCTCTATTAGGTTTTCTCTGTACTTTTGGTAGGTCATTATTTTACCTATGAGGGAGTGAGGAGGATCAGGGAAGGGAGAAGATGATGAGGCAGTGGgtggtccaccttccctgtggccgACATGGGTGCTGTATGGACATGGACGTCTCGTTTGTcatgccactttactgccagTTGTTGAACGTTCTCATTGGAACTCCACCTCCCCTCTGCATCTTCCTGTATCCGAATGCCGACATCCCCTTCCTGTTCGACCTGACCGTGCTACAGGCCCCTGTGCTGTTGGAGAACAGATGCTGAAAAGGTGTGGGACTACTGTACCAATTGTCCACATACAGAGTGTGTCCcttgatgaggatgatgaggagcCAGCATGGTTATCACCGTGGACACGGACACCCCAAGCCCCTCATAATGTTGGATGTCAGTGGTAGACCAGGTGTAGACTATAATATCCTGGACAAATCCTACTTCGCACATGACAAAGAACATGACCCCAAACCTGTGCCTTTTGGAGGGAATATATTGACGGAACGCCAGCCTACCCTTCCATAACATCAGGGACTCATCAATGCATAGATCATTGTATGGCACAAAGACCCGACCAAATGCTGATGTCAGGCTGGTAAGAACTGTTTTGTGTAACGGGTAATTTAGTGTAATGGGTCATTTATGTtggcagtagcattgttgacGAAATGCAGGCATCACAGCAGAACTAGGAAGCGGTCTTGGGAAAAGAGGTTGGCAAAGAAGGAAAttgcaaacataggatctgtgctccagtattctcttagggagttTTTCTTAACTATTCCCATGAGAAGGATTGTCAGCAGGAAGGTATACATTTGACTAATCTATTGGaagacattgctaatgctacagcttagctcactagctacatacataaacaacaatacttgaatggctcagagtgggagtgagaggatACGTGATTGACTGCCTGCACACGCC
>TU2494957
TGCCTCCATGTGTGACTGACTACCTTGAGTAGTTTTTGAGGGACTTTGCAGGGAGGCATAGGGGATTACCTGCAGCAGGACGGCCCCCAGTGTATGGGCGCCGAGGGGTGTGGTGCTCCCCCAGCAGCTCTCTATTAGGTTTTCTCTGTACTTTTGgtggtccaccttccctgtggccgACATGGGTGCTGTATGGACATGGACGTCTCGTTTGTcatgccactttactgccagTTGTTGAACGTTCTCATTGGAACTCCACCTCCCCTCTGCATCTTCCTGTATCCGAATGCCGACATCCCCTTCCTGTTCGACCTGACCGTGCTACAGGCCCCTGTGCTGTTGGAGAACAGATGCTGAAAAGGTGTGGGACTACTGTACCAATTGTCCACATACAGAGTGTGTCCcttgatgaggatgatgaggagcCAGCATGGTTATCACCGTGGACACGGACACCCCAAGCCCCTCATAATGTTGGATGTCAGTGGTAGACCAGGTGTAGACTATAATATCCTGGACAAATCCTACTTCGCACATGACAAAGAACATGACCCCAAACCTGTGCCTTTTGGAGGGAATATATTGACGGAACGCCAGCCTACCCTTCCATAACATCAGGGACTCATCAATGCATAGATCATTGTATGGCACAAAGACCCGACCAAATGCTGATGTCAGGCTGGTAAGAACTGTTTTGTGTAACGGGTAATTTAGTGTAATGGGTCATTTATGTtggcagtagcattgttgacGAAATGCAGGCATCACAGCAGAACTAGGAAGCGGTCTTGGGAAAAGAGGTTGGCAAAGAAGGAAAttgcaaacataggatctgtgctccagtattctcttagggagttTTTCTTAACTATTCCCATGAGAAGGATTGTCAGCAGGAAGGTATACATTTGACTAATCTATTGGaagacattgctaatgctacagcttagctcactagctacatacataaacaacaatacttgaatggctcagagtgggagtgagaggatACGTGATTGACTGCCTGCACACGCC

Function

NR:

description
PREDICTED: piggyBac transposable element-derived protein 4-like, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2494953 False 1067 lncRNA 0.48 2 38883172 38884568
TU2494954 False 1106 lncRNA 0.48 2 38883201 38884568
TU2494957 True 1038 lncRNA 0.48 2 38883201 38884568

Neighbor

gene id symbol gene type direction distance location
LOC110510245 medag coding downstream 50638 38828056 ~ 38832534 (-)
trnae-uuc-63 NA coding downstream 61559 38821542 ~ 38821613 (-)
trnae-uuc-62 NA coding downstream 77519 38805582 ~ 38805653 (-)
hmgb1a hmgb1 coding downstream 93918 38783085 ~ 38789254 (-)
katnal1 katnal1 coding downstream 106503 38749863 ~ 38776669 (-)
LOC110509390 n4bp2l1 coding upstream 409191 39293759 ~ 39308359 (-)
LOC110509389 NA coding upstream 482724 39359191 ~ 39370231 (-)
fryb LOC103354091 coding upstream 489396 39373049 ~ 39621811 (-)
LOC110510249 LOC106563843 coding upstream 1382075 40266643 ~ 40267461 (-)
LOC110510250 sertm1 coding upstream 1431958 40316526 ~ 40328236 (-)
G2182402 NA non-coding downstream 49274 38833505 ~ 38833898 (-)
G2182392 NA non-coding downstream 73342 38808519 ~ 38809830 (-)
G2182351 NA non-coding downstream 131622 38734154 ~ 38751550 (-)
G2182345 NA non-coding downstream 155770 38721579 ~ 38727402 (-)
G2182337 NA non-coding downstream 166638 38690566 ~ 38716534 (-)
G2182498 NA non-coding upstream 21528 38906096 ~ 38906421 (-)
G2182506 NA non-coding upstream 25585 38910153 ~ 38910442 (-)
G2182544 NA non-coding upstream 60398 38944966 ~ 38945239 (-)
G2182555 NA non-coding upstream 68211 38952779 ~ 38953053 (-)
G2182747 NA non-coding upstream 72128 38956696 ~ 38956933 (-)
LOC110509458 LOC106592337 other downstream 708870 38160179 ~ 38237799 (-)
G2181315 NA other downstream 1095499 37780582 ~ 37787673 (-)
G2181304 NA other downstream 1344932 37536665 ~ 37538240 (-)
nsrp1 nsrp1 other downstream 1398522 37482837 ~ 37498898 (-)
LOC110510193 LOC106563731 other downstream 1643379 37234793 ~ 37241163 (-)
G2182508 NA other upstream 30038 38914606 ~ 38914926 (-)
G2182749 LOC106674859 other upstream 75071 38959639 ~ 38960457 (-)
G2183255 NA other upstream 664785 39549353 ~ 39549869 (-)
G2183279 NA other upstream 708419 39592987 ~ 39594345 (-)

Expression


Co-expression Network