Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_000407 (CR848003.1)

Basic Information

Item	Value
gene id	XLOC_000407
gene name	CR848003.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	34400240 ~ 34400354 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000695
TGAAACAGCCATTTCACCCTGCAGCACAAGACTGGTTGCTCACTGAAGCTAGGAAGGGCTGAGCCTGgctagtacctggatgggagaaaaCATGGGAAATCTAGTCATGTGTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000111052

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00000695	True	115	rRNA	0.49	1	34400240	34400354

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_000406	kctd12.2	coding	upstream	102837	34295925 ~ 34297403 (+)
XLOC_000405	slc5a7a	coding	upstream	138247	34243650 ~ 34261993 (+)
XLOC_000404	arl6	coding	upstream	166184	34203817 ~ 34234056 (+)
XLOC_000402	epha6	coding	upstream	199045	33969015 ~ 34201195 (+)
XLOC_000403	dre-mir-734	coding	upstream	277268	34122880 ~ 34122972 (+)
XLOC_000408	NA	coding	downstream	50305	34450659 ~ 34454447 (+)
XLOC_000409	klf12a	coding	downstream	96501	34496855 ~ 34558804 (+)
XLOC_000410	gpalpp1	coding	downstream	285051	34685405 ~ 34694365 (+)
XLOC_000411	gtf2f2a	coding	downstream	295019	34695373 ~ 34706903 (+)
XLOC_000412	CR339054.7	coding	downstream	296149	34696503 ~ 34727517 (+)
XLOC_000401	CT573012.1	non-coding	upstream	432967	33967157 ~ 33967273 (+)
XLOC_000400	CU915566.1	non-coding	upstream	665106	33735018 ~ 33735134 (+)
XLOC_000394	NA	non-coding	upstream	881417	33517802 ~ 33518823 (+)
XLOC_000390	BX322647.1	non-coding	upstream	1183522	33215241 ~ 33216718 (+)
XLOC_000414	NA	non-coding	downstream	457014	34857368 ~ 34861057 (+)
XLOC_000415	NA	non-coding	downstream	633940	35034294 ~ 35093512 (+)
XLOC_000421	NA	non-coding	downstream	1496038	35896392 ~ 35898437 (+)
XLOC_000425	BX324156.1	non-coding	downstream	1753907	36154261 ~ 36154377 (+)

Expression

Co-expression Network