G2185896


Basic Information

Item Value
gene id G2185896
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 42747942 ~ 42749815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2499199
aataggggagaggcgttgtgccactaggtgttgctttatctgtttttttaaaccaggttttctgtttatttgagcaatatgagatggaacggagttacatgcaataagggctctatataatactgtacgctttcttgaatttgttctggttttggggactgtgaaaagacccctggtggcataagtgtgtgtgtgtcagagctgtgtttaaGTTGACTaggcaaacaatttgggattttcaacacaatgttattaaaagaagtgatgcagtcaatctctcctcaactcttagccaagagagagactggcatgcataatatttatatcagccctctgattacaattaagagcaaggCGTGCTACTAGGTCTCTCCTTGCATCACTGGACCACaagactggacaataatcaagattagactaaactagagcctgcaggacttgctttgtggagtttGGTGTCAAAAAAtactttattttgtattttttactgATGATTTTTGAGAGCGGTTGTAACCAAGGTTTCCAGAAGGGGAAGAAGTGGTGAAATAAAGAATTGAAGTACACAACATGACCAAAGATACGTGGACACCTGTTTGTCgatcatctcattccaaaatcatgggcgttaatatggagttggtccccccccgcTTGACAAATCAAATGACAAA
>TU2499197
CCTGACTTGGCTTCATTGATTTGTGAattgacattttttttgtgtgtgtgatcaAATCAAGTTGGTATCATCGGCAAAAAAAAGAATGTGAAGTACGGTAGGTCATTGATATACAGATTAGGAATAACAAAGGTCCAAGGATCGATCCCTGTGGAACGCCACAGGAAATCTTCGCACTTAGATGGTAGACGAACAACCATTTGCATACAGAAATTGTTTTCTAATCATAAACATAATTATATAGCCATTTATATGTATAATCAGGACCACCATAATAATGCAATTTAGCAAGTATTGTTTCATGATCAACCGTGTCAAACATTCTAGATCAACCTAGAAAGACGACAAGAGCGTATTCATTGTTGTTcagggtattttattaggatctctattagctgttgcaaaagcagcagctactcttcctggagtccacacagaacacagaacacagaacatgaaacatgacataatacagaacatcaatagacaagaaccgCTCAAAGACAGGACTACATAAAACTAATGTAAAGGAACACGTAGCCTAGAtatcagtacagacacacaaactgtctaggtccaataggggagaggcgttgtgccactaggtgttgctttatctgtttttttaaaccaggttttctgtttatttgagcaatatgagatggaacggagttacatgcaataagggctctatataatactgtacgctttcttgaatttgttctggttttggggactgtgaaaagacccctggtggcataagtgtgtgtgtgtcagagctgtgtttaaGTTGACTaggcaaacaatttgggattttcaacacaatgttattaaaagaagtgatgcagtcaatctctcctcaactcttagccaagagagagactggcatgcataatatttatatcagccctctgattacaattaagagcaaggCGTGCTACTAGGTCTCTCCTTGCATCACTGGACCACaagactggacaataatcaagattagactaaactagagcctgcaggacttgctttgtggagtttGGTGTCAAAAAAtactttattttgtattttttactgATGATTTTTGAGAGCGGTTGTAACCAAGGTTTCCAGAAGGGGAAGAAGTGGTGAAATAAAGAATTGAAG
>TU2499198
aataggggagaggcgttgtgccactaggtgttgctttatctgtttttttaaaccaggttttctgtttatttgagcaatatgagatggaacggagttacatgcaataagggctctatataatactgtacgctttcttgaatttgttctggttttggggactgtgaaaagacccctggtggcataagtgtgtgtgtgtcagagctgtgtttaaGTTGACTaggcaaacaatttgggattttcaacacaatgttattaaaagaagtgatgcagtcaatctctcctcaactcttagccaagagagagactggcatgcataatatttatatcagccctctgattacaattaagagcaaggCGTGCTACTAGGTCTCTCCTTGCATCACTGGACCACaagactggacaataatcaagattagactaaactagagcctgcaggacttgctttgtggagtttGGTGTCAAAAAAtactttattttgtattttttactgATGATTTTTGAGAGCGGTTGTAACCAAGGTTTCCAGAAGGGGAAGAAGTGGTGAAATAAAGAATTGAAG
>TU2499196
ccactaggctaccctgccaccccagttATGCTACAGGGAGGGGATTACTGGGTCGTCTGGTCCATCAGACTGACCCCTAGTCTACACTAAGTGATTGAGGGATGTTTTGGTAATGTGAATATAAGAATTCCAGAGTTTGGAACCTCTGTATCTGATAAGAGAATTCTCTCTGGTTTTATGGATTTGGGAATGAACCTGGAAGAATACATTGAAGGGTTTAGCTAGGTTGTCGGGGAAGTATGTATATTTGTAGATGAAGGTGAATAATTGGAGTATATTAATGTTGTATTTGGAAAGATAATATATTGAGTTTCTTAAACGGAGGGGCAAATGGAGCCCAGTAGTTAGAGGAGGTGGCTAGTCTGGCCAATGTCTTTTGTGTGATGAGTAATTTGTGTAGGTAGGAAACGAATATCTTTCCAGGACAACTTTTCATCAACTAGTACACCGAGGAATCTAGTAGATTTCATTCCATTTTGATATTCTGGCtcttttttgtatatatacacatttacataTATTATATAGTTCAGATTCTTACCTGTGAATACAATGTAGTGGGATTTATCGATATTTAAAGATCATTTGTTAATCTGGAACCATTCGGGAAAATGTGGCCACCACGCCTGACTTGGCTTCATTGATTTGTGAattgacattttttttgtgtgtgtgatcaAATCAAGTTGGTATCATCGGCAAAAAAAAGAATGTGAAGTACGGTAGGTCATTGATATACAGATTAGGAATAACAAAGGTCCAAGGATCGATCCCTGTGGAACGCCACAGGAAATCTTCGCACTTAGATGGTAGACGAACAACCATTTGCATACAGAAATTGTTTTCTAATCATAAACATAATTATATAGCCATTTATATGTATAATCAGGACCACCATAATAATGCAATTTAGCAAGTATTGTTTCATGATCAACCGTGTCAAACATTCTAGATCAACCTAGAAAGACGACAAGAGCGTATTCATTGTTGTTcagggtattttattaggatctctattagctgttgcaaaagcagcagctactcttcctggagtccacacagaacacagaacac

Function

NR:

description
PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2499199 False 671 lncRNA 0.40 1 42747942 42748612
TU2499197 False 1137 lncRNA 0.38 1 42748054 42749190
TU2499198 False 559 lncRNA 0.39 1 42748054 42748612
TU2499196 True 1074 lncRNA 0.38 1 42748742 42749815

Neighbor

gene id symbol gene type direction distance location
LOC118945309 NA coding downstream 7498 42734257 ~ 42740444 (-)
LOC110509472 LOC106563882 coding downstream 140867 42162163 ~ 42661980 (-)
dchs1b LOC105011153 coding downstream 248163 42257886 ~ 42499779 (-)
arfip2b arfip2 coding downstream 611990 42077453 ~ 42135952 (-)
fhdc3 LOC106563862 coding downstream 681622 42043930 ~ 42066320 (-)
eva1c LOC106563889 coding upstream 110 42749925 ~ 42775546 (-)
bach1b bach1 coding upstream 700513 43450328 ~ 43470242 (-)
map3k7cl map3k7cl coding upstream 728375 43478190 ~ 43513478 (-)
cadm2a cadm2 coding upstream 1064814 43814629 ~ 44580847 (-)
LOC110509396 LOC106594559 coding upstream 2134622 44884437 ~ 44890751 (-)
G2185885 NA non-coding downstream 1778 42745835 ~ 42746164 (-)
G2185883 NA non-coding downstream 3050 42744497 ~ 42744892 (-)
G2185870 synj1 non-coding downstream 26970 42697647 ~ 42720972 (-)
G2185874 NA non-coding downstream 41677 42705949 ~ 42706265 (-)
G2185868 NA non-coding downstream 47428 42699590 ~ 42700514 (-)
G2185902 NA non-coding upstream 23053 42772868 ~ 42774624 (-)
G2185904 NA non-coding upstream 30706 42780521 ~ 42780769 (-)
G2185912 NA non-coding upstream 39719 42789534 ~ 42791168 (-)
G2185929 NA non-coding upstream 66557 42816372 ~ 42816679 (-)
G2185525 LOC106563877 other downstream 894936 41852200 ~ 41853006 (-)
G2185427 NA other downstream 1152013 41595652 ~ 41595929 (-)
LOC110509471 LOC106563870 other downstream 1237541 41502509 ~ 41530610 (-)
sparta spg20 other downstream 2020928 40709409 ~ 40727062 (-)
ccdc169 LOC106563839 other downstream 2038856 40697812 ~ 40709293 (-)
G2186010 NA other upstream 215994 42963371 ~ 42984016 (-)
G2186492 grik1 other upstream 651798 43401613 ~ 43403275 (-)
G2186532 cct8 other upstream 775937 43525752 ~ 43526754 (-)
G2186529 cct8 other upstream 783110 43532925 ~ 43536669 (-)
G2186630 NA other upstream 930137 43679952 ~ 43680591 (-)

Expression


Co-expression Network