G2185930 (LOC106563892)


Basic Information

Item Value
gene id G2185930
gene name LOC106563892
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 42818100 ~ 42818377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2499242
ctgtgcacCACTCCAGCTCTGTGCAGATGTTCCACAGCCATCACCAGCTGCCGTACGTAtttctgagtctctctctcgTCCAGCTTCTTCTTATCGTAGATCCGGTTCATGATGTTTCCTCCAGGACACAACTCCATCACCAGGTAGTAACTGATGATAACAGGACACAACTCCATCACCAGGTAGTAACTGATGATAACAGAACACAACTCCATCACCAGGTAGTAACTGATGATAACAGGACACAACTCCATCACCAGGTAGTAACTGATGATAAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106563892, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2499242 True 278 lncRNA 0.47 1 42818100 42818377

Neighbor

gene id symbol gene type direction distance location
eva1c LOC106563889 coding downstream 42554 42749925 ~ 42775546 (-)
LOC118945309 NA coding downstream 77656 42734257 ~ 42740444 (-)
LOC110509472 LOC106563882 coding downstream 211025 42162163 ~ 42661980 (-)
dchs1b LOC105011153 coding downstream 318321 42257886 ~ 42499779 (-)
arfip2b arfip2 coding downstream 682148 42077453 ~ 42135952 (-)
bach1b bach1 coding upstream 631951 43450328 ~ 43470242 (-)
map3k7cl map3k7cl coding upstream 659813 43478190 ~ 43513478 (-)
cadm2a cadm2 coding upstream 996252 43814629 ~ 44580847 (-)
LOC110509396 LOC106594559 coding upstream 2066060 44884437 ~ 44890751 (-)
LOC110510296 LOC106563931 coding upstream 2276041 45094418 ~ 45115616 (-)
G2185929 NA non-coding downstream 1421 42816372 ~ 42816679 (-)
G2185912 NA non-coding downstream 26932 42789534 ~ 42791168 (-)
G2185904 NA non-coding downstream 37331 42780521 ~ 42780769 (-)
G2185902 NA non-coding downstream 43476 42772868 ~ 42774624 (-)
G2185935 NA non-coding upstream 8305 42826682 ~ 42826883 (-)
G2185932 LOC106601811 non-coding upstream 12570 42830947 ~ 42833856 (-)
G2186013 NA non-coding upstream 49641 42868018 ~ 42901985 (-)
G2186020 NA non-coding upstream 87837 42906214 ~ 42906973 (-)
G2186021 NA non-coding upstream 91834 42910211 ~ 42911154 (-)
G2185525 LOC106563877 other downstream 965094 41852200 ~ 41853006 (-)
G2185427 NA other downstream 1222171 41595652 ~ 41595929 (-)
LOC110509471 LOC106563870 other downstream 1307699 41502509 ~ 41530610 (-)
sparta spg20 other downstream 2091086 40709409 ~ 40727062 (-)
ccdc169 LOC106563839 other downstream 2109014 40697812 ~ 40709293 (-)
G2186010 NA other upstream 147432 42963371 ~ 42984016 (-)
G2186492 grik1 other upstream 583236 43401613 ~ 43403275 (-)
G2186532 cct8 other upstream 707375 43525752 ~ 43526754 (-)
G2186529 cct8 other upstream 714548 43532925 ~ 43536669 (-)
G2186630 NA other upstream 861575 43679952 ~ 43680591 (-)

Expression


Co-expression Network