G2186020


Basic Information

Item Value
gene id G2186020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 42906214 ~ 42906973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2499364
GTTATCGCAGGggaagcgaaatgcttgtgtttctagctccaaaaggtgcagtaatacctaatgcttgtgtttctagctccaacagtacagtaatatctaatgcttgtgtttctagctccaacagtacagtaatatctaatgcttgtgtttctagctccaacagtgcagtaatatctagataaatgcttgtgtttctagctccaacagtgcagtaatatctaatgcttgtgtttctagctccaacagtgcagtaatatctagataaatgcttgtgtttctagctccaacagtacagtaatatctagataaatgcttgtgtttctagctccaacagtgcagtaatatctatgtATTTTAACAATGTGGAAATAGTGAAGGGGCCtaaatactttatgaatgcaTTATTGCTTCTTTGCAAAAAGCAATTTCTCAAGTAAGAAAACCAGACGTTATTGGTAGAAAGGGTTTGGA
>TU2499365
GTTATCGCAGGggaagcgaaatgcttgtgtttctagctccaaaaggtgcagtaatacctaatgcttgtgtttctagctccaacagtacagtaatatctaatgcttgtgtttctagctccaacagtacagtaatatctaatgcttgtgtttctagctccaacagtgcagtaatatctaatgcttgtgtttctagctccaacagtacagtaatatctaatgcttgtgtttctagctccaacagtacagtaatatctaatgcttgtgtttctagctccaacagtgcagtaatatctagataaatgcttgtgtttctagctccaacagtgcagtaatatctaatgcttgtgtttctagctccaacagtacagtaatatctagataaatgcttgtgtttctagctccaacagtgcagtaatatctatgtATTTTAACAATGTGGAAATAGTGAAGGGGCCtaaatactttatgaatgcaTTATTGCTTCTTTGCAAAAAGCAATTTCTCAAGTAAGAAAACCAGACGTTATTGGTAGAAAGGGTTTGGA
>TU2499367
GTTATCGCAGGggaagcgaaatgcttgtgtttctagctccaaaaggtgcagtaatacctaatgcttgtgtttctagctccaacagtacagtaatatctaatgcttgtgtttctagctccaacagtacagtaatatctaattaaatgcttgtgtttctagctccaacagtacagtaatatctaatgcttgtgtttctagctccaacagtgcagtaatatctaatgcttgtgtttctagctccaacagtacagtaatatctagataaatgcttgtgtttctagctccaacagtgcagtaatatctatgtATTTTAACAATGTGGAAATAGTGAAGGGGCCtaaatactttatgaatgcaTTATTGCTTCTTTGCAAAAAGCAATTTCTCAAGTAAGAAAACCAGACGTTATTGGTAGAAAGGGTTTGGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2499364 False 471 lncRNA 0.37 2 42906214 42906973
TU2499365 False 544 lncRNA 0.37 2 42906214 42906973
TU2499367 True 427 lncRNA 0.36 3 42906214 42906973

Neighbor

gene id symbol gene type direction distance location
eva1c LOC106563889 coding downstream 130668 42749925 ~ 42775546 (-)
LOC118945309 NA coding downstream 165770 42734257 ~ 42740444 (-)
LOC110509472 LOC106563882 coding downstream 299139 42162163 ~ 42661980 (-)
dchs1b LOC105011153 coding downstream 406435 42257886 ~ 42499779 (-)
arfip2b arfip2 coding downstream 770262 42077453 ~ 42135952 (-)
bach1b bach1 coding upstream 543355 43450328 ~ 43470242 (-)
map3k7cl map3k7cl coding upstream 571217 43478190 ~ 43513478 (-)
cadm2a cadm2 coding upstream 907656 43814629 ~ 44580847 (-)
LOC110509396 LOC106594559 coding upstream 1977464 44884437 ~ 44890751 (-)
LOC110510296 LOC106563931 coding upstream 2187445 45094418 ~ 45115616 (-)
G2186013 NA non-coding downstream 4229 42868018 ~ 42901985 (-)
G2185932 LOC106601811 non-coding downstream 72358 42830947 ~ 42833856 (-)
G2185935 NA non-coding downstream 79331 42826682 ~ 42826883 (-)
G2185930 LOC106563892 non-coding downstream 87837 42818100 ~ 42818377 (-)
G2185929 NA non-coding downstream 89535 42816372 ~ 42816679 (-)
G2186021 NA non-coding upstream 3238 42910211 ~ 42911154 (-)
G2186031 NA non-coding upstream 22407 42929380 ~ 42930842 (-)
G2186032 NA non-coding upstream 22809 42929782 ~ 42930387 (-)
G2186037 NA non-coding upstream 28604 42935577 ~ 42936360 (-)
G2186042 NA non-coding upstream 39051 42946024 ~ 42947997 (-)
G2185525 LOC106563877 other downstream 1053208 41852200 ~ 41853006 (-)
G2185427 NA other downstream 1310285 41595652 ~ 41595929 (-)
LOC110509471 LOC106563870 other downstream 1395813 41502509 ~ 41530610 (-)
sparta spg20 other downstream 2179200 40709409 ~ 40727062 (-)
ccdc169 LOC106563839 other downstream 2197128 40697812 ~ 40709293 (-)
G2186010 NA other upstream 58836 42963371 ~ 42984016 (-)
G2186492 grik1 other upstream 494640 43401613 ~ 43403275 (-)
G2186532 cct8 other upstream 618779 43525752 ~ 43526754 (-)
G2186529 cct8 other upstream 625952 43532925 ~ 43536669 (-)
G2186630 NA other upstream 772979 43679952 ~ 43680591 (-)

Expression


Co-expression Network