G2187882 (proser1)


Basic Information

Item Value
gene id G2187882
gene name proser1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 45455725 ~ 45474352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2501738
tttctcaaatttctgctctgctagagctgccctggtcgaCTATAACTGTGAAGAAGCATGAACCTGAGCTAGGTAACAGgcTGGAAGTTGGAGCTGAAGGCAGAGGCAAAGCCAGGTAGAACGGGAGAGGAGGACGGGACTCCTGCTGCCACGGACGCCGCCGAATGGAGAGGGGCTACGGTTGCTACGGACACCCCGGCACCCATGAAGGAAGACAGGACGGGGCTCCCCGCCCCAGGTCCTCCTGAACCTCCAAATCCTGAGAACCCCCCTGGACTGGGCCCTGGAACCAACCCCGGGAAGATAGATGGGGTGGTGGTCAGACCCATCCCAAAGGGAGAGGCTCCACTTGTGGCTACGCTGTGAGACAGGCCTGGGTAGGCCATGGAGGTCTGGGGGTGGGAGGTAGGGgtcatggaggacagagaggaggatggagggaagggtgaagaggaggacagggaggaggggaagggggagaggccGGGGTAGTGAGGGGGAGCCGGGCTGGAGGAGAGGGCCTGGAGGCTGGCCATAGCAGCAGGGCTGGGTAGGGAGCCCTGGGGAGAAGAAGAGGGGTGGGACAGACCCAGGGAGCGCGCTAAGGCCGCTGATCCGCCAGGCATCACCAGAGAGCTGAGGGAGGGAGTCCCCGCACGTGAAGGGCCTTTAAAGGCAGAGGGGACTGGGCTGTTACTGCCACTGCCTGTCCCCCCTCCTGTTCTAGCCAGTGGGCCGCGGTGCTGCTCGCTGTAGAAGGATGCTTGGGCCTGGCCggacagggctggggagggcttGGGGCTGGGGgccgaggaagaggagggaggatagcTGCGGATCACCGACCCAGACGGGGTGGTCTGGTATGCGGGCAGGCCAGGGAAGGCAGGGCCTGTCTGGGGGTTATACTGCGGAAGGCCCATGGAGGTACCCTGAgggagagggtcagggaggggGGTCCTTGGGGTAGGGGTGTCTGACCGAGAGGCACC

Function

symbol description
proser1 Orthologous to human PROSER1 (proline and serine rich 1).

NR:

description
proline and serine-rich protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2501738 True 992 lncRNA 0.64 2 45455725 45474352
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110517637 LOC106563928 coding upstream 32811 45409129 ~ 45422914 (+)
LOC110518300 NA coding upstream 65247 45383333 ~ 45391063 (+)
mtus2a LOC106563907 coding upstream 78622 45204557 ~ 45377103 (+)
gbe1a gbe1 coding upstream 371986 44918376 ~ 45083739 (+)
ltn1 ltn1 coding upstream 1834626 43548269 ~ 43621099 (+)
LOC118945264 NA coding downstream 3837 45477230 ~ 45480543 (+)
vps36 vps36 coding downstream 21256 45495608 ~ 45537579 (+)
LOC110509476 thsd1 coding downstream 70577 45544929 ~ 45620110 (+)
tpte LOC106563924 coding downstream 159086 45633438 ~ 45661226 (+)
chordc1b chordc1 coding downstream 661732 46136084 ~ 46156675 (+)
G2187872 NA non-coding upstream 9268 45445263 ~ 45446457 (+)
G2187842 NA non-coding upstream 15406 45396722 ~ 45440319 (+)
G2187868 NA non-coding upstream 15896 45439084 ~ 45439829 (+)
G2187844 NA non-coding upstream 51157 45404310 ~ 45404568 (+)
G2187881 NA non-coding downstream 1979 45476331 ~ 45476862 (+)
G2187934 NA non-coding downstream 88940 45563292 ~ 45566596 (+)
G2187943 NA non-coding downstream 109688 45584040 ~ 45590546 (+)
G2187944 NA non-coding downstream 110739 45585091 ~ 45591072 (+)
G2187841 LOC106563930 other upstream 47005 45394006 ~ 45408720 (+)
G2187837 NA other upstream 97940 45356811 ~ 45357785 (+)
G2187834 NA other upstream 102456 45351759 ~ 45353269 (+)
G2187008 NA other upstream 944405 44510996 ~ 44511320 (+)
G2187946 NA other downstream 124465 45598817 ~ 45603196 (+)
G2188678 NA other downstream 846176 46320225 ~ 46325583 (+)
LOC110517633 LOC106604056 other downstream 972622 46446951 ~ 46489028 (+)
LOC118945337 LOC108237022 other downstream 1029923 46504069 ~ 46563999 (+)

Expression

G2187882(proser1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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G2187882(proser1) Expression in each Bioproject

Bar chart with 14 bars.
G2187882(proser1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network