G2189327


Basic Information

Item Value
gene id G2189327
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 46983261 ~ 47015772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2503687
TTCTAACTATTTTGTAATATTTATTGTAGATTTTCTGTTAATTTTTTCCCCCACTATTCATCACAGCAAGCGCTTTAgagaacaacaaacaaacaaaggaaCATCAACAAACGTCACAGTATTCCAACACAGTAGTGACTGacttactgccccccccccccctacaaacCCCACACTCCACCCAGACCAGCCAATAGGATTCACCCTCGCCTCCGGACTGTTCCACCGGTGGGGGAAAGGGGGTGAGTAAGACACAGAAGCATCACATAATAACTACAAGGGTCGctctcacaacacaacacataatAACACATTGATTGTGTACTTTAAAGCTAGTATTATAATCAGAGAAGTGCAGTAGTCCTAGACAACACACTGGCCATTCCCACAAACAAAACACACTGGGCCATTCACACAAACTGTTAAAACACACTGGCCATTCCCAGCAACTGTTTTAGATGGCAAGTAATAAAGTTATTATCAGTAGTTTATTGAtcgattgattgactgattgatagCTAGATAGTTAGGTGTGTGAGAAAAAGACAGAGGTTAGAGGATGAGACTTGGTGGTCAGTGGTtagctgtttgtctgtctgtccttccacCCTTTGTGTTCAGTCTCTAGCTGACATtggtacctctctccctccctccctcttctctccctcctctctctctctctctctccctcctctcactctctctctccctcctctcactctctctccctcctctcactctctctccctcctctcactctccctcctttctctctctctccatcctctctctctctccctcctcactctctcctctttctctctctctccctcctctctctctccctcctctcactctctctccctcctctcactctctctctccctcctctcactctccctcctctctctctctccctcctctctctccctcctctctctccctcctctcactgtctctctcctctttctccctcctctctcatccctctcttcttacTCATTCCTAACTGGAACTCAACACGTCACACCCTGGTGTCTGTCAGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTTTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCACTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTtggtcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccaggtctgtacaccctattccctatatagtgcactactttagaccaggtctatatagggaataggactccaTTTGGGACTTAATAAAGCTTCTTCATGATACCGCCCTCTCTCCCTTCAGCATCCTCTTCATCATCAACTCCCCATACTAATTAATACTCATATTAACCACATCGTTATGTTGCCACGACAACGATGCTGTTTCTAAAATACGGTAGACAACGCAGGTCTGTGGTTGGTGGGTGAGGGGAGGGGCTGCAGCGGTGGGTTGTGATGTAGGCGTGGCCTGGGGTGTTCAGTACGCGTGATTGGCCACGTAGAGAGACTGTCCTGCCGCTCCGCTGTCTCCTGTTGACTCATACTTCCCCTGGGCAGCCAGACCGTTCacctggaggacaggaggggaggggggagagggaggagaggaggggggagggaggagaggaggggtggag
>TU2503688
TTCTAACTATTTTGTAATATTTATTGTAGATTTTCTGTTAATTTTTTCCCCCACTATTCATCACAGCAAGCGCTTTAgagaacaacaaacaaacaaaggaaCATCAACAAACGTCACAGTATTCCAACACAGTAGTGACTGacttactgccccccccccccctacaaacCCCACACTCCACCCAGACCAGCCAATAGGATTCACCCTCGCCTCCGGACTGTTCCACCGGTGGGGGAAAGGGGGTGAGTAAGACACAGAAGCATCACATAATAACTACAAGGGTCGctctcacaacacaacacataatAACACATTGATTGTGTACTTTAAAGCTAGTATTATAATCAGAGAAGTGCAGTAGTCCTAGACAACACACTGGCCATTCCCACAAACAAAACACACTGGGCCATTCACACAAACTGTTAAAACACACTGGCCATTCCCAGCAACTGTTTTAGATGGCAAGTAATAAAGTTATTATCAGTAGTTTATTGAtcgattgattgactgattgatagCTAGATAGTTAGGTGTGTGAGAAAAAGACAGAGGTTAGAGGATGAGACTTGGTGGTCAGTGGTtagctgtttgtctgtctgtccttccacCCTTTGTGTTCAGTCTCTAGCTGACATtggtacctctctccctccctccctcttctctccctcctctctctctctctctctccctcctctcactctctctctccctcctctcactctctctccctcctctcactctctctccctcctctcactctccctcctttctctctctctccatcctctctctctctccctcctcactctctcctctttctctctctctccctcctctctctctccctcctctcactctctctccctcctctcactctctctctccctcctctcactctccctcctctctctctctccctcctctctctccctcctctctctccctcctctcactgtctctctcctctttctccctcctctctcatccctctcttcttacTCATTCCTAACTGGAACTCAACACGTCACACCCTGGTGTCTGTCAGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTTTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCACTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTtggtcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccaggtctatatagggaataggactccaTTTGGGACTTAATAAAGCTTCTTCATGATACCGCCCTCTCTCCCTTCAGCATCCTCTTCATCATCAACTCCCCATACTAATTAATACTCATATTAACCACATCGTTATGTTGCCACGACAACGATGCTGTTTCTAAAATACGGTAGACAACGCAGGTCTGTGGTTGGTGGGTGAGGGGAGGGGCTGCAGCGGTGGGTTGTGATGTAGGCGTGGCCTGGGGTGTTCAGTACGCGTGATTGGCCACGTAGAGAGACTGTCCTGCCGCTCCGCTGTCTCCTGTTGACTCATACTTCCCCTGGGCAGCCAGACCGTTCacctggaggacaggaggggaggggggagagggaggagaggaggggggagggaggagaggaggggtggag
>TU2503689
TTCTAACTATTTTGTAATATTTATTGTAGATTTTCTGTTAATTTTTTCCCCCACTATTCATCACAGCAAGCGCTTTAgagaacaacaaacaaacaaaggaaCATCAACAAACGTCACAGTATTCCAACACAGTAGTGACTGacttactgccccccccccccctacaaacCCCACACTCCACCCAGACCAGCCAATAGGATTCACCCTCGCCTCCGGACTGTTCCACCGGTGGGGGAAAGGGGGTGAGTAAGACACAGAAGCATCACATAATAACTACAAGGGTCGctctcacaacacaacacataatAACACATTGATTGTGTACTTTAAAGCTAGTATTATAATCAGAGAAGTGCAGTAGTCCTAGACAACACACTGGCCATTCCCACAAACAAAACACACTGGGCCATTCACACAAACTGTTAAAACACACTGGCCATTCCCAGCAACTGTTTTAGATGGCAAGTAATAAAGTTATTATCAGTAGTTTATTGAtcgattgattgactgattgatagCTAGATAGTTAGGTGTGTGAGAAAAAGACAGAGGTTAGAGGATGAGACTTGGTGGTCAGTGGTtagctgtttgtctgtctgtccttccacCCTTTGTGTTCAGTCTCTAGCTGACATtggtacctctctccctccctccctcttctctccctcctctctctctctctctctccctcctctcactctctctctccctcctctcactctctctccctcctctcactctctctccctcctctcactctccctcctttctctctctctccatcctctctctctctccctcctcactctctcctctttctccctcctctctcctatctctctctctctccctcctctctctctccctcctctcactctctctccctcctctcactctctctctccctcctctcactctccctcctctctctctctccctcctctctctccctcctctctctccctcctctcactgtctctctcctctttctccctcctctctcatccctctcttcttacTCATTCCTAACTGGAACTCAACACGTCACACCCTGGTGTCTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCACTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTtggtcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccaggtctgtacaccctattccctatatagtgcactactttagaccaggtctatatagggaataggactccaTTTGGGACTTAATAAAGCTTCTTCATGATACCGCCCTCTCTCCCTTCAGCATCCTCTTCATCATCAACTCCCCATACTAATTAATACTCATATTAACCACATCGTTATGTTGCCACGACAACGATGCTGTTTCTAAAATACGGTAGACAACGCAGGTCTGTGGTTGGTGGGTGAGGGGAGGGGCTGCAGCGGTGGGTTGTGATGTAGGCGTGGCCTGGGGTGTTCAGTACGCGTGATTGGCCACGTAGAGAGACTGTCCTGCCGCTCCGCTGTCTCCTGTTGACTCATACTTCCCCTGGGCAGCCAGACCGTTCacctggaggacaggaggggaggggggagagggaggagaggaggggggagggaggagaggaggggtggag
>TU2503690
TTCTAACTATTTTGTAATATTTATTGTAGATTTTCTGTTAATTTTTTCCCCCACTATTCATCACAGCAAGCGCTTTAgagaacaacaaacaaacaaaggaaCATCAACAAACGTCACAGTATTCCAACACAGTAGTGACTGacttactgccccccccccccctacaaacCCCACACTCCACCCAGACCAGCCAATAGGATTCACCCTCGCCTCCGGACTGTTCCACCGGTGGGGGAAAGGGGGTGAGTAAGACACAGAAGCATCACATAATAACTACAAGGGTCGctctcacaacacaacacataatAACACATTGATTGTGTACTTTAAAGCTAGTATTATAATCAGAGAAGTGCAGTAGTCCTAGACAACACACTGGCCATTCCCACAAACAAAACACACTGGGCCATTCACACAAACTGTTAAAACACACTGGCCATTCCCAGCAACTGTTTTAGATGGCAAGTAATAAAGTTATTATCAGTAGTTTATTGAtcgattgattgactgattgatagCTAGATAGTTAGGTGTGTGAGAAAAAGACAGAGGTTAGAGGATGAGACTTGGTGGTCAGTGGTtagctgtttgtctgtctgtccttccacCCTTTGTGTTCAGTCTCTAGCTGACATtggtacctctctccctccctccctcttctctccctcctctctctctctctctctccctcctctcactctctctctccctcctctcactctctctccctcctctcactctctctccctcctctcactctccctcctttctctctctctccatcctctctctctctccctcctcactctctcctctttctccctcctctctcctatctctctctctctccctcctctctctctccctcctctcactctctctccctcctctcactctctctctccctcctctcactctccctcctctctctctctccctcctctctctccctcctctctctccctcctctcactgtctctctcctctttctccctcctctctcatccctctcttcttacTCATTCCTAACTGGAACTCAACACGTCACACCCTGGTGTCTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCACTCTGGTTGGTCACTGTTTGATGTAATCTAGTATCTGATTGGTCCCTATCTGATGTTATCTTCTCTCTGGTtggtcactactttagaccagagccctatggcaccctattccctatatagtgcactactttagaccaggtctgtacaccctattccctatatagtgcactactttagaccaggtctatatagggaataggactccaTTTGGGACTTAATAAAGCTTCTTCATGATACCGCCCTCTCTCCCTTCAGCATCCTCTTCATCATCAACTCCCCATACTAATTAATACTCATATTAACCACATCGTTATGTTGCCACGACAACGATGCTGTTTCTAAAATACGGTAGACAACGCAGGTCTGTGGTTGGTGGGTGAGGGGAGGGGCTGCAGCGGTGGGTTGTGATGTAGGCGTGGCCTGGGGTGTTCAGTACGCGTGATTGGCCACGTAGAGAGACTGTCCTGCCGCTCCGCTGTCTCCTGTTGACTCATACTTCCCCTGGGCAGCCAGACCGTTCacctggaggacaggaggggaggggggagagggaggagaggaggggggagggaggagaggaggggtggag
>TU2503691
TTCTAACTATTTTGTAATATTTATTGTAGATTTTCTGTTAATTTTTTCCCCCACTATTCATCACAGCAAGCGCTTTAgagaacaacaaacaaacaaaggaaCATCAACAAACGTCACAGTATTCCAACACAGTAGTGACTGacttactgccccccccccccctacaaacCCCACACTCCACCCAGACCAGCCAATAGGATTCACCCTCGCCTCCGGACTGTTCCACCGGTGGGGGAAAGGGGGTGAGTAAGACACAGAAGCATCACATAATAACTACAAGGGTCGctctcacaacacaacacataatAACACATTGATTGTGTACTTTAAAGCTAGTATTATAATCAGAGAAGTGCAGTAGTCCTAGACAACACACTGGCCATTCCCACAAACAAAACACACTGGGCCATTCACACAAACTGTTAAAACACACTGGCCATTCCCAGCAACTGTTTTAGATGGCAAGTAATAAAGTTATTATCAGTAGTTTATTGAtcgattgattgactgattgatagCTAGATAGTTAGGTGTGTGAGAAAAAGACAGAGGTTAGAGGATGAGACTTGGTGGTCAGTGGTtagctgtttgtctgtctgtccttccacCCTTTGTGTTCAGTCTCTAGCTGACATtggtacctctctccctccctctctttcccctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2503687 False 1873 lncRNA 0.48 2 46983261 46985153
TU2503688 False 1829 lncRNA 0.48 3 46983261 46985153
TU2503689 False 1765 lncRNA 0.48 2 46983261 46985153
TU2503690 False 1829 lncRNA 0.48 2 46983261 46985153
TU2503691 True 671 lncRNA 0.43 2 46983261 47015772

Neighbor

gene id symbol gene type direction distance location
LOC110510302 LOC106563936 coding upstream 94727 46863262 ~ 46888534 (+)
inpp5kb LOC106563939 coding upstream 347541 46588208 ~ 46636264 (+)
LOC118945337 LOC108237022 coding upstream 419262 46504069 ~ 46563999 (+)
LOC110517633 LOC106604056 coding upstream 494522 46446951 ~ 46489028 (+)
LOC110517634 LOC106563910 coding upstream 543385 46377726 ~ 46439876 (+)
polq LOC106595115 coding downstream 89641 47105413 ~ 47186621 (+)
c1qa c1qc coding downstream 227233 47243005 ~ 47270503 (+)
c1qc LOC106591842 coding downstream 264325 47280097 ~ 47287013 (+)
c1qb c1qb coding downstream 288266 47304038 ~ 47314715 (+)
hoatz LOC100286538 coding downstream 327787 47343559 ~ 47359357 (+)
G2189308 LOC106592729 non-coding upstream 24734 46955853 ~ 46958527 (+)
G2189295 NA non-coding upstream 77411 46902956 ~ 46905850 (+)
G2189281 NA non-coding upstream 88707 46890981 ~ 46894554 (+)
G2189270 NA non-coding upstream 138401 46844446 ~ 46844860 (+)
G2189268 NA non-coding upstream 139171 46833628 ~ 46844090 (+)
G2189345 NA non-coding downstream 9364 47025136 ~ 47025548 (+)
G2189346 LOC106563969 non-coding downstream 9992 47025764 ~ 47026369 (+)
G2189370 NA non-coding downstream 53378 47069150 ~ 47069351 (+)
G2189323 LOC107735056 non-coding downstream 54970 47070742 ~ 47077473 (+)
G2189324 NA non-coding downstream 61995 47077767 ~ 47078318 (+)
G2189283 NA other upstream 40502 46895556 ~ 46942759 (+)
G2188866 NA other upstream 225241 46757250 ~ 46758020 (+)
G2188775 NA other upstream 424705 46557448 ~ 46558556 (+)
G2189534 NA other downstream 149289 47165061 ~ 47165526 (+)
G2189507 LOC106563947 other downstream 171783 47187555 ~ 47224353 (+)
G2189691 NA other downstream 549477 47565249 ~ 47567756 (+)

Expression

G2189327 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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G2189327 Expression in each Bioproject

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G2189327 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15000.
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Co-expression Network