XLOC_004077 (uba3)


Basic Information

Item Value
gene id XLOC_004077
gene name uba3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17785182 ~ 17803137 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007774
GCATTTCAATTTGAGCGTTTATGACAATATGGCGGAAGGAGAGGAACcGGAGAAGAAAAGAAGGAGAATAGAGGAGCTGAATGAGAAAATGGTTGTGGATGGAGGAAGTGGAGATCGGAGTGAGTGGCAGGGACGATGGGATCATGTCAGAAAGTTCCTAGAGAGAACGGGACCCTTCACTCATCCGGATTTTGAAGCCAGCACTGAGTCTCTCCAGTTTTTATTGGACACATGCAAGATTCTGGTTATTGGAGCCGGTGGACTTGGATGTGAGCTGCTCAAAGATCTGGCTTTGTCAGGTTTTCGACATATTCATGTAGTGGACATGGACACCATTGACGTTTCTAACCTCAACAGACAGTTCCTCTTCAGGCCAAAAGATGTGGGCCGACCAAAGGCAGAGGTTGCAGCAGACTTCGTAAACGACAGGGTCCCAGGATGCAGTGTTGTCCCACATTTTAAGAAAATCCAGGACTTGGATGAGACATTTTACAGGCAATTCCACATAGTCGTCTGTGGCCTGGACTCTGTTATCGCCAGAAGATGGATGAACGGCATGCTTCTCTCCCTGCTGATTTATGAAGATGGAGTCCTGGACCCCAGCTCTATTATTCCACTAATAGATGGTGGCACAGAGGGCTTCAAGGGCAATGCCCGGGTCATTCTTCCAGGAATGACAGCCTGCATTGATTGCACTCTGGAGCTCTACCCCCCACAGATCAACTTCCCGATGTGCACTATAGCGTCTATGCCACGGTTACCCGAACATTGTGTTGAATATGTACGCATGCTGCTGTGGCCCAAAGAAAAGCCCTTTGGAGATGGTGTGGTTCTAGATGGAGATGACCCAAAGCACATCCAGTGGGTGTATCAGAAATCTTTGGAGAGAGCGGCTGAGTTCAACATCACTGGGGTCACTTACAGACTCACCCAGGGGGTTGTGAAGCGAATAATTCCTGCTGTGGCTTCTACAAATGCTGTCATTGCTGCTGCTTGCGCCACAGAGGTTTTCAAAATTGCCACAAGCGCTTATGTTCCCTTGAACAACTACCTGGTGTTTAATGATGTCGACGGGCTGTACACATACACCTTTGAAGCAGAAAGAAAGGAGAACTGTTCTGCGTGCAGTCAGGTGCCACAGGACATGCAGTTCACACCGTCAGCTAAACTACAGGAGGTTCTGGACTACCTGACTGAGAACGCCTCTCTCCAAATGAAGTCTCCTGCAATCACTACAACTTTggatggaaaaaacaaaactctgTATTTACAGACTGTAGCATCTATTGAAGAAAGAACACGACCTAATCTGAGCAAAACACTGAAAGAACTTGGACTGGTGGATGGTCAAGAGCTGGCTGTGGCTGATGTCACCACTCCCCAAACCGTGCTCTTTAAGCTCAAGTTCATCTCATAGGACAAATGCTTTATATGGACATTTTAGATGCGGTTAAACTGCAGTCGTCTTCGAAATGAAGCATTCTTGGAAATGTAGTCTGTAAACTCCCTGTTTCAGAGCATCAGCAGTGACATCACGTGCACATGCTCCGCTGGAATAATTAGCTTATTTTGGGGCAACTTTGTACATCAGAGACACTTACAGAGGGCGTATGTTTCTTTGTCTTGCACTGCTATAGTCATAGGAGGCATTTTGACGGATTTCCTTTTTATGCAAactgtttatctatttattattttgtgcatTCGAACCAATCACAGTATGTTGTTCAATGTcttgttgaaaaaaaagaaaagaagaactgttcatgttttgaattaaaattgggaaccttattttaaattaa
>TCONS_00007775
gtgacttttattatgaaaagtcGTAGTGCGTCAGCTGGATAGCAGTTTTCCGTGTCATAAGATTGCGCATTTCAATTTGAGCGTTTATGACAATATGGCGGAAGGAGAGGAACcAATGGTTGTGGATGGAGGAAGTGGAGATCGGAGTGAGTGGCAGGGACGATGGGATCATGTCAGAAAGTTCCTAGAGAGAACGGGACCCTTCACTCATCCGGATTTTGAAGCCAGCACTGAGTCTCTCCAGTTTTTATTGGACACATGCAAGATTCTGGTTATTGGAGCCGGTGGACTTGGATGTGAGCTGCTCAAAGATCTGGCTTTGTCAGGTTTTCGACATATTCATGTAGTGGACATGGACACCATTGACGTTTCTAACCTCAACAGACAGTTCCTCTTCAGGCCAAAAGATGTGGGCCGACCAAAGGCAGAGGTTGCAGCAGACTTCGTAAACGACAGGGTCCCAGGATGCAGTGTTGTCCCACATTTTAAGAAAATCCAGGACTTGGATGAGACATTTTACAGGCAATTCCACATAGTCGTCTGTGGCCTGGACTCTGTTATCGCCAGAAGATGGATGAACGGCATGCTTCTCTCCCTGCTGATTTATGAAGATGGAGTCCTGGACCCCAGCTCTATTATTCCACTAATAGATGGTGGCACAGAGGGCTTCAAGGGCAATGCCCGGGTCATTCTTCCAGG
>TCONS_00007776
ATGACAATATGGCGGAAGGAGAGGAACcGGAGAAGAAAAGAAGGAGAATAGAGGAGCTGAATGAGAAAATGGTTGTGGATGGAGGAAGTGGAGATCGGAGTGAGTGGCAGGGACGATGGGATCATGTCAGAAAGTTCCTAGAGAGAACGGGACCCTTCACTCATCCGGATTTTGAAGCCAGCACTGAGTCTCTCCAGTTTTTATTGGACACATGCAAGATTCTGGTTATTGGAGCCGGTGGACTTGGATGTGAGCTGCTCAAAGATCTGGCTTTGTCAGGTTTTCGACATATTCATGTAGTGGACATGGACACCATTGACGTTTCTAACCTCAACAGACAGTTCCTCTTCAGGCCAAAAGATGTGGGCCGACCAAAGGCAGAGGTTGCAGCAGACTTCGTAAACGACAGGGTCCCAGGATGCAGTGTTGTCCCGTATCCTTTAAAGTGTATTAACTTAGTTTTGTCTTTTGTTTcaaaatttaattttgattttgtttgtgGGAAGTTTGAAATGCCACTGTACTTTTTTTCTGTGTTCAAAAAGTTAGAGGGCAGTAagatgattatattttatttgcaagAAACTTCcaatattttttgcaataaagGATgcatttaataatcaataaatctATTAAATATGTGTATAATTTTACAA

Function

symbol description
uba3 Predicted to enable NEDD8 activating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBA3 (ubiquitin like modifier activating enzyme 3).

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0032446 protein modification by small protein conjugation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019781 NEDD8 activating enzyme activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-2825 Predicted to enable NEDD8 activating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBA3 (ubiquitin like modifier activating enzyme 3).

Ensembl:

ensembl_id ENSDARG00000057987

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007774 False 1805 mRNA 0.45 18 17785182 17803071
TCONS_00007775 False 699 mRNA 0.48 8 17793376 17803137
TCONS_00007776 True 659 lncRNA 0.41 6 17796609 17803051

Neighbor

gene id symbol gene type direction distance location
XLOC_004076 tmf1 coding downstream 2252 17757342 ~ 17782930 (-)
XLOC_004075 eogt coding downstream 29738 17726649 ~ 17755444 (-)
XLOC_004074 tafa4b coding downstream 71195 17596979 ~ 17713987 (-)
XLOC_004073 NA coding downstream 555329 17223850 ~ 17229853 (-)
XLOC_004072 CR769769.3 coding downstream 637721 17144309 ~ 17147461 (-)
XLOC_004078 CR589944.2 coding upstream 103765 17906902 ~ 17908682 (-)
XLOC_004079 cishb coding upstream 156370 17959507 ~ 17964525 (-)
XLOC_004080 twf2b coding upstream 161961 17965098 ~ 17981427 (-)
XLOC_004081 qrich1 coding upstream 194266 17997403 ~ 18107447 (-)
XLOC_004082 LO018315.7 coding upstream 341148 18144285 ~ 18148488 (-)
XLOC_004063 CR854846.1 misc downstream 1657504 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 5093491 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 5163415 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 5193886 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 5271920 12512966 ~ 12513262 (-)
XLOC_004071 CR769769.2 non-coding downstream 687249 17093753 ~ 17097933 (-)
XLOC_004070 NA non-coding downstream 693987 17081422 ~ 17091195 (-)
XLOC_004068 AL844563.1 non-coding downstream 1110018 16669218 ~ 16675164 (-)
XLOC_004092 NA non-coding upstream 1046789 18849926 ~ 18852369 (-)
XLOC_004093 NA non-coding upstream 1285277 19088414 ~ 19091101 (-)
XLOC_004095 CT737428.1 non-coding upstream 1377315 19180452 ~ 19180555 (-)

Expression


Co-expression Network