tbc1d2b (tbc1d2b)


Basic Information

Item Value
gene id tbc1d2b
gene name tbc1d2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 694938 ~ 782481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968645.1
TCGCTAGGTTCACAATGCTGAATGATCCCACCTAATTTTGGCTCCTTCCTGGACTGGACTGCCTTCCATTTTTTATGACATATATTTGTATTGTTAGAGCGGCCACTTGAGTATCTGGTCAGTATAATGGATCATCTGTGACCGTGCGTCCGCTCTGGTGCAAGCCAAGACGAAGAAAGTTGGGGAAAGATGCAAGAAGAGGATGGCGGAGAGGAGAACTCTACACGAGACCTACGGGTTCTGGCCTCCAATTCGGTGGACGCAGGCGAACCCGAATCACTGAAGGACCCGGTTGCGAAACTATGCGGTTATTTGACTAAACTCGCTGGAAAAGGGCCGCTGCGGGGGTTTAAACTCCGCTGGTTTGTGTACGACGAGAGGAAATGTTATTTGTATTACTTCAAGACTCCCCAAGACGCCTTGCCGCTGGGACACATAACGATAGGCGAAGCCAGCTTCAGCTATGATGTGGAGGGGGATGAGGGGCAGTTTGAGATTCGCACCGCGGGGAAGGAGTTTGTACTCAAGGCCCCTAACCGCCAGGTAATGCAGTACTGGCTCCAGCAGCTGCAGCAGAAGCGTTGGGAGTTCAGTAACACCAGAGggtctggacagagagacagctggagTTCTCCTACCCCTCACACTGGCCTGGTGGCCAAAGATACAGATGTCTTTGTGTTTGAGAAGCCCAGTCACAGTGACAGCATGGAGAGGGTACGCAGCGACTTTGCTATGGAAACAGACACGGACGGACTGGTGGGTGTCCAATCAGCACGAGGCCCCTCCCACCACCCCCCCAACCCCCTCAACTTCTCCAGCAAGCTGGGCCACTGGAGCTCAGAGATCAGGAACTCCATGTCAGGTCTGCGTGTGGgtcgaggaggaggagagaacagacgctctgtcttctacactgggagcagtggtgatGAGTGGGAGATGTTAGACGCTCCCTCAACCAAGGACATCAACCAGGACCACAAACCTCCCACCCAGCCTCAGACTGACTCACACAGACACTCCATTGGTTCTCCGTTCACATTTGACTTCGGGCGGAGCAGCAGTTCCTCGTTGCGGCCCAAGCGGCCCACTCTGCGGGACATAATGGGTTCAGGGAGGTTAGGACGCAGCATAGAGagctcttccccctcccctcagACCACGCCCCCAGTGGAGTGTAACGGCAGCAGGACCAATGAGCTGCAGCTCCGCCTCCAGAGCCAGGAACAGGAACTGACACGCCTCCACGAGGAGAACAACAAGCTGACTGAGGAGTTAACCTCCCAGAAGGAGCTGGTCAGACTGCTTCAGCAGACCTTGAGGAGCACCCAGAGGGAGATGCGACCAGCGCCAGTATTAACTCCAGGAGCTGCCTCACCTCCAGCCCCAGGGTTCCCACAGTCGGACCTAGCCCAGATGGAAGCCCTCCTCCTGGACAGGGATGGTCAGGTCCAGGCCCTGTGTTGCCAGATGGAGCGTCTAGCCCTGGAGAAGGAGAGTCTACAGAGGGAGCTGAAAGGACTGAAGGTCAAGGTTGGGGAGATCAATGAGCAGCTGAGCATGCTGATGGAGACCATCCAGGCCAAAGACGAGGTCATCATTAAACTGTCCCAGACACCCCCCCAGGGAGCAGACGGGACCACCCCCCTGCTGCAGGACTGCAGCTCAGCTCCACCCCCCGCCAGCCAGCAACAGGAGATAAACAATCTTAAGGACAGTGTTCAGGGCTATAAATCCCAGAACAAGTTCCTGAATAAGGAGATCCTGGAGCTGACTATTCTACTGAGGAACGCTGAGGCCAGGGAGAGATCTCTGGAGGTTAAGTATGTGGCGTTGGAGGCTAAAGTGTGTCAGGTTGAGAGTAAGTACCTGGTGCTGCTTCAGGACCTGAAGAACCCAGTGTGTTCCTCTTCAGAACAGAGTCCTGCCAGGGAGGTCATCTCTAGACTGTTGGAGGATGCACTGAACAACACTGACCCTACGGGACACGCCGTCTTTAAGCCACACCCTGTCAGTGAGTACGATGTGTTTGGCTTCAAAACAGTTCCagaggaggatgatgaagaggagaAGCTGGTAGCCAAGgtGAGGGCTCTGGACCTGTGCTCCCTCTCCCTAACAGACCCTGAGGTGTCAGTGGGGGTGAAGTGGGAGAACTATCTCTCCTCTACTATGAACAGAGACATGGTGCACTGCCCCGAACTCAAAGCCCTTATGAGGAGCGGGGTGCCACATGTCCACCGCTCCAAGGTGTGGCGCTGGTGCGTGTCCTACCACACCAGGAAGTTCCGTGACAGCCTGGCTCCAAACTACTACGAGACCTTACTGGGTGTGGCCAGAGACAAGCCTAATCCCGCCTCCAAACAGATAGAGCTTGACCTGCTGAGGACCTTACCTAACAACAAACACTACTCCTCCCCCGGCGCCGACGGAATACAGAAACTACGTAATGTCCTGCTAGCCTTCTCCTGGAGGAACCCTGACATAGGATACTGCCAGGGACTCAACAGGCTGGCAGCCATAGCTCTGCTGTACCTGGACCAGGAGGATGCTTTCTGGTGTCTAATCACTATCGTGGAGGTCTTCATGCCCCAGGACTACTACACCAAGACCCTGCTGGGATCACAgGTGGACCAGCGTGTTTTTAAGGACCTGCTGAGTGAGAAGCTGCCCAGACTCCACGCCCACTTTGACCTCTACAAGGTTGACTCCTCCCTCATTACCTTCAACTGGTTCCTGGTCCTCTTCGTAGACTCAGTGAACTCTGACCTCCTCTTCAAGATCTGGGATGCCTTCCTGTACGAGGGACCCAAGATCATCTTCCGCTTCGCCCTCGCTCTCTTCAAGTACAAGGAGGAAGAGTTTCTGAAGCTTCAGGACTCCATGGCCATCTTCAAGTACCTCCGCTATTTCACCATAACTATCCTGGACTGGAGgAAGTTGATGAGCATAGCGTTTGTGGACATGAATCCGTTCCCCCTGAGACAGATCCTTAACCGCAGGACCTTCCATCTGGAGAAGGTTAGACTAgagctgacagagcttgaggccATCAGACAAAccttcctcagagagagagacacacacgccGACGCACGCGCGCTGTGTAGCGACGATGAGGAGGACAACTAGCCAATCAGGGCCCAGGCCAACTAGCACATCAGTAGAGAGACTGACCACGGCCCCCGACGCACGCACGCAAGCTTTGTAGCGACAACTAGCACACAGCCTGTCAGGGTGCAGTGCCTGCAGACTCCAGCCAATCAGGATC

Function

symbol description
tbc1d2b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D2B (TBC1 domain family member 2B).

NR:

description
TBC1 domain family member 2B

GO:      GO:0005097,GO:0032851

KEGG:

id description
K20166 TBC1D2B; TBC1 domain family member 2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968645.1 True 3274 mRNA 0.55 16 694938 782481

Neighbor

gene id symbol gene type direction distance location
LOC110521136 NA coding upstream 84671 608566 ~ 616624 (+)
bnip2 bnip2 coding upstream 137730 485872 ~ 557208 (+)
cfap161 LOC106584861 coding upstream 310681 363443 ~ 384257 (+)
LOC110522685 LOC105029374 coding upstream 335676 89318 ~ 359262 (+)
trnat-ugu-41 NA coding upstream 615964 78903 ~ 78974 (+)
dapk2b dapk2 coding downstream 7357 789838 ~ 835444 (+)
ca12 LOC106584842 coding downstream 226268 1008749 ~ 1028587 (+)
man2c1 man2c1 coding downstream 293473 1075954 ~ 1136244 (+)
sema7a LOC106584837 coding downstream 385510 1167991 ~ 1240748 (+)
islr2 LOC106584836 coding downstream 497352 1279833 ~ 1284559 (+)
G2190452 NA non-coding upstream 4260 690149 ~ 690678 (+)
G2190450 NA non-coding upstream 5279 689435 ~ 689659 (+)
G2190449 NA non-coding upstream 6750 687676 ~ 688188 (+)
G2190441 NA non-coding upstream 25915 667991 ~ 669023 (+)
G2190438 NA non-coding upstream 29110 665517 ~ 665828 (+)
G2190479 NA non-coding downstream 5036 787517 ~ 787966 (+)
G2190480 NA non-coding downstream 5946 788427 ~ 788976 (+)
G2190484 NA non-coding downstream 14177 796658 ~ 797269 (+)
G2190481 NA non-coding downstream 16805 799286 ~ 841111 (+)
G2190508 NA non-coding downstream 59633 842114 ~ 842518 (+)
G2190199 NA other upstream 167472 523534 ~ 542502 (+)
G2190050 NA other upstream 332311 360931 ~ 362627 (+)
G2190529 NA other downstream 100459 882940 ~ 884097 (+)
G2190881 NA other downstream 469185 1251666 ~ 1252951 (+)
G2191047 NA other downstream 899073 1681554 ~ 1682049 (+)
G2191616 NA other downstream 1464583 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1977779 2760260 ~ 2762972 (+)

Expression


Co-expression Network