ca12 (LOC106584842)


Basic Information

Item Value
gene id ca12
gene name LOC106584842
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1008749 ~ 1028587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968558.1
ATGGGCTGTGATGTCACCAGAGGTCCCGACGGTGAGCACCACTGGTCCAAGCACTACCCATTCTGTGGCGGAACATTCCAGTCACCCATAGACATCCAGACCCAGCTGCTGAGGTTTGACCCCACACTACGACCAATCgagctccagaactacaacctcTCAGCCAATGAGCAGCTGACCCTCGGGAACAATGGACACTCCAttcagcTGTCCCTACCCAGGAGGATGTATCTGTCCAGCCTGCCTCACCGTTACACTGCTGCTCAACTCCACTTCCACTGGGGCTCAGAACACCTGCCTGTCGGATCAGAACACACCGTCAACGGCAGGCAGTTTGCTGCCGAGATGCATATGGTGCTCTTCAACTCAGACAAGTACCCCAACATCTCTGTGGCAGCAGACAAGTCAGACGGCCTGGCTGTACTGGGAGTTCTGATAGAGGTCGGGGAATTCAACCCAGCGTTCGCTCAGTTCCTCAAGTACATCAATGGTATTAAATACAGAGatcaGAGGGTGCAGGTCCCAGCCTTCAACATCCGCAGTCTGCTGCCTGTACTCTTGGATGAATATTACCGTTATGATGGCTCGTTGACCACTCCCCCCTGCTATCCCAGCGTGCTTTGGACTGTGTTCAAAAACCCTGTCACCATCTCACTCAAACAGTTTCTGGCCCTAGCAACGGCCATCTACTCCTCCCACCAACAGGAGTCGGCCCCAGTGGCCATGAACAGCAACTACAGGAAACCACAGTACACGGACAACAGAGTTGTGCTCTGCTCTTTCCAGGGGGGCAGAGGACTACAGGGTGCTACTCAGACGGTCACCTCTCCGTTCCTGAGGAGGCAGGTCATCAACCAGCTCTTAGATGGAGACCTGGCAGACCTGGCAGACCAGGATGGGCTCAACCAGCTGTTAGATGGAGATCTGGCAGACCAGGATGGGCTCAACCAGCTATTAGTCCCATCTTCCTGGAAGAACCAACAGAACAGGCAACCTGTGTGGAAGTCAGGTCTGAGCGAGGACATGCTGTGTTACGTCTCCTTGGAGCAGGACGTGTCTCGCCAGCTGAGCAGAGGGAGATCCCCTACCCATACAGACACCCAGCTGGTCCAGGCTCTCAGAGAAACTCTGTTCCCAGAGCTCAACCTGCGCAGCTACCTGGGCTGTAAGTCTGACCTGGCTCTGTTCACCATCAGACAGCTCCTCCGGGGGAGATCAGCCACAGATGAGGCCCTGGAGCTGGACCAGGCCATTGTCAAGGCCTTGGGGGGGACAGGGCAGAGGGGCTCCACAGCACAGCAGCAGACCAACACTCTCTCCAAGCACCAAACAGGCTTCGCTCCTGCCCCTGCTGCCGTGCCTAAGAAACCCAATCAGCCAATCCCATGGCTCCAGCCTATGGAGTGGGAGGACTAG

Function

NR:

description
carbonic anhydrase 12 isoform X1

GO: NA

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968558.1 True 1416 mRNA 0.56 9 1008749 1028587

Neighbor

gene id symbol gene type direction distance location
dapk2b dapk2 coding upstream 173305 789838 ~ 835444 (+)
tbc1d2b tbc1d2b coding upstream 226268 694938 ~ 782481 (+)
LOC110521136 NA coding upstream 398482 608566 ~ 616624 (+)
bnip2 bnip2 coding upstream 451541 485872 ~ 557208 (+)
cfap161 LOC106584861 coding upstream 624492 363443 ~ 384257 (+)
man2c1 man2c1 coding downstream 47367 1075954 ~ 1136244 (+)
sema7a LOC106584837 coding downstream 139404 1167991 ~ 1240748 (+)
islr2 LOC106584836 coding downstream 251246 1279833 ~ 1284559 (+)
LOC110510428 LOC106584867 coding downstream 696811 1725398 ~ 1755496 (+)
LOC118945762 NA coding downstream 719097 1747684 ~ 1749666 (+)
G2190736 NA non-coding upstream 41063 966961 ~ 967686 (+)
G2190562 NA non-coding upstream 65721 942768 ~ 943028 (+)
G2190561 NA non-coding upstream 66869 940682 ~ 941880 (+)
G2190560 NA non-coding upstream 68311 940116 ~ 940438 (+)
G2190530 NA non-coding upstream 121974 885815 ~ 886775 (+)
G2190748 NA non-coding downstream 3072 1031659 ~ 1033412 (+)
G2190790 NA non-coding downstream 16813 1045400 ~ 1045680 (+)
G2190794 NA non-coding downstream 18872 1047459 ~ 1047832 (+)
G2190799 NA non-coding downstream 22379 1050966 ~ 1051171 (+)
G2190800 NA non-coding downstream 33706 1062293 ~ 1067566 (+)
G2190529 NA other upstream 124652 882940 ~ 884097 (+)
G2190199 NA other upstream 481283 523534 ~ 542502 (+)
G2190050 NA other upstream 646122 360931 ~ 362627 (+)
G2190881 NA other downstream 223079 1251666 ~ 1252951 (+)
G2191047 NA other downstream 652967 1681554 ~ 1682049 (+)
G2191616 NA other downstream 1218477 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1731673 2760260 ~ 2762972 (+)
smad3b LOC107755098 other downstream 1864648 2892934 ~ 2915974 (+)

Expression


Co-expression Network