sema7a (LOC106584837)


Basic Information

Item Value
gene id sema7a
gene name LOC106584837
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 1167991 ~ 1240748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969371.1
AATCCTACTAATTACTACACAATTAATGTTACTTTTTTTGTTTTGAACCGACTTCGCCGTCTGACAGACCAGGGCACCTTCGTCACACCAGGGAGGCAGTCTGATTCCGAATGCAATCAACTTTAAACTGCATGCAAAAACATGCTTTAATTAACAAGCAGCGATATTTAATCCAATCGTCTCTTCCCACCCGCAACTATAACAAATAAAATGAGGGAGTCGGGTGTCTCGCCTTCTCTACGGTCTTTGTTTATGTTTCCCTGGCAACACAcagcgagctagctagctaacgttatcgtGTGATTGTTTTTAGCCATCTGGCGTTTTATTTGTTGACTTGGTCTTATCCACACGGATCTATCAAACACTCAGCTGTAGCTGACTAGTCACGGCAGGCAACAACATATGCACATTGGCTCACCTTATCGAAATAAAAACCAAGATATaaataaatatactttttttttattttagtagTAACGTTAGATTTGTAAGGTGATGCAAGTTAATTTATAAGTGTTTTATTTTAGCAGTAACGTTAGATTTGTAAGGTGATGGGTAGTTATTTTATAAGTGTTTTTATTTGAGCAGTAACGTTAGATTTAAAATGGGACAAAAACGTTGAACCCGGAGTGAAGGGAGGCGGGTTACAAgctccctccctctaccttcgGGGATGAATCTGTTATTTCCCAGTGCTTGCGATGAACGCAAAGGAGACGGACAGCAACGTATTCATTTCCACGTTCATCATGATTCCAACGCATTGCCGTCATGGCAACACCAATGAATTATTCTGAGTAGTTTGACCGCAAAATCAAAGCATAAAAATGAATTTGCTTGTTTTTCTTGGATTGATTAATTTTCCATTTACCCGAGGTGTGAGGGATATACCAAGACTCATCTTGAGACAAGACAGGATAGAAGACCGGCTGGAATACAACCTTCCTCAGAACCACACAGTCTTCTTCCAACCAGAAGATGGTGATGAGCTGTACGTTGGAGGCACAGACTTTGTCTTTCAGATTGATGTGGAGTACAGTCGAATCGTAGAGTTGTTCCCACTCGGCACGACAGCTGGACAGACCTGTGGAGAGGGTCCATGTAAGAATGTCATCACTGTTATCCAGAAGTTTCAGGACAGTCTGTTTGTCTGTGGGACCAATGGGAACAAGCCCCAGTGCTGGAAGCTGTATTCTCAGATGCCCAATCACACACTTGAGATTGTCGAGAGTTACGAAGGCACTGGACTCTCTCCTTACGTTTACTCCCAGAATGCACTCTCCCTCACTGTAGAGGGGGACCTATATGCTGCAGCTCCTTTATACAGCGATGGGAGCTCATTACAGTTCAGAAGGAAAGCTGGCAGCAGAACCAATGTATGGATGTATGACAAGTGGGTGACTGAGCCCACGTTCATCTCCGCCTGCTGGGTGAGACGTAGGGAGGAGCCGGACAAGGAGAAGATATATATCTTCTTCAGGGAGAAGAACTCTGACAGCAGCCCTGAAGCTGATCCCTGGATCTCTAGAGTAGCACAAGTCTGTAAGGTGGATGAAGGCGGTTCTAAGCGGTTCTTGCAGAACATGTGGACGTCGTTCCTGAAGGCTCGGCTGGTGTGTGGGATTCCCAACGAGTCGCTCTACTTTAACCGTCTCCAAGATGTCTACGTGCTCCACGCGGAGGAATGGAGGGACTCACAAGTCTATGCTCTGTTCACTAGCAGCTGGAATGGCACAGCTGTCTGCGTCTACTCCATGGAAGAGATCGACCGGATATTCCAGAACTCTCCCTTCAGGGGATACAGTAACGACATTCCCAACCCAAGACCTGGAACATGTGTCTCTGACAGTAAAGACCTGCCGTTGGCTACGGTGAACGTGATAAAGGATCACCCAGAGATGACAGACTGGATTCATCCCATCCAGCCCTACACCCCATTCTACATCTCTAACTATAACTACACCAAGATAGTTGTGGACCGAGTACAGGCTGCAGACTACACCATGCACAACGTCCTGCTGCTAGCAACTGACACTGGAATGATCCATAAGATCTTAAATGATCGTTTCAAACCTTTCATCATCTCAGAGACTCATCTCTCCAACCACTCTGATGTCATCAGATCCATGAAACTGGACTCTAGAAAGAGGAAACTGGTGGTGGGTTTGTCAGAGCAGATCTCCATTCTGGACCTCCAGAGGTGTCAGGACTATAACGGATCCTGTTATGTGTGTGTTCTGGCCAGAGACCCGTACTGCGCCTGGACAGAGGCTGGGTGCAAACCCACCGTCCCGGGAGGCATTCAAAATATTGATGGAGGAGAAACGAATGTGTGCCTTAAAACAGCAGGAGTTAAAATATCAGAAGAACCAAAGAAGCCCAGCAACAGGACCAGACGTGACACCCAGCCCTCCTCGTCCCTGAACGCCCTCGGTGCATCGGTCCACTCTGTGCCCCTGAACGTCCCCTTCTACCTGTCCTGTCCCATAGACTCCTACCACGCCCACTACAGCTGGGAACACCTGGGCACGACACGCCCCTGTCTGCGACTGCAGGCCAGCTGTCTCCATCTCATCCCCTCCATGCAGACTGAGCACTATGGGCACTACCAGTGTGTCTCCACGGAGAGAGACTATACCAGGGTGGTGAGGGTGGTCCGAGCTACACAGCTGCTGAGTAACCACAACCCAAGCATAATCAGCAGGCCTGCTAGACCGGTGGGAACCATCAGTACTAACATAGAGGACTCTAAGAACAACGGAGCAACAGCAGCTATGGCAGTGCAGGCGGGCTGGTTCGTGACCTTTGCAGCTTTGGACATTATCGTGCAACTTCTGCAATAAAATCATGTCCACTATGGACTTCATCATGA

Function

NR:

description
semaphorin-7A-like

GO: NA

KEGG:

id description
K06529 SEMA7, CD108; semaphorin 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969371.1 True 2875 mRNA 0.48 14 1167991 1240748

Neighbor

gene id symbol gene type direction distance location
man2c1 man2c1 coding upstream 31747 1075954 ~ 1136244 (+)
ca12 LOC106584842 coding upstream 139404 1008749 ~ 1028587 (+)
dapk2b dapk2 coding upstream 332547 789838 ~ 835444 (+)
tbc1d2b tbc1d2b coding upstream 385510 694938 ~ 782481 (+)
LOC110521136 NA coding upstream 557724 608566 ~ 616624 (+)
islr2 LOC106584836 coding downstream 39085 1279833 ~ 1284559 (+)
LOC110510428 LOC106584867 coding downstream 484650 1725398 ~ 1755496 (+)
LOC118945762 NA coding downstream 506936 1747684 ~ 1749666 (+)
hacd3 hacd3 coding downstream 548848 1789596 ~ 1841114 (+)
LOC118945831 LOC106591986 coding downstream 738487 1979235 ~ 2008439 (+)
G2190813 NA non-coding upstream 1120 1165738 ~ 1166871 (+)
G2190814 NA non-coding upstream 12756 1154754 ~ 1155235 (+)
G2190841 NA non-coding upstream 14414 1153205 ~ 1153577 (+)
G2190833 NA non-coding upstream 18096 1141656 ~ 1149895 (+)
G2190831 NA non-coding upstream 32933 1134682 ~ 1135058 (+)
G2190807 NA non-coding downstream 3259 1244007 ~ 1245822 (+)
G2190888 LOC106584835 non-coding downstream 44660 1285408 ~ 1288020 (+)
G2190894 NA non-coding downstream 65086 1305834 ~ 1314502 (+)
G2190900 NA non-coding downstream 74797 1315545 ~ 1318812 (+)
G2190914 NA non-coding downstream 111159 1351907 ~ 1353311 (+)
G2190529 NA other upstream 283894 882940 ~ 884097 (+)
G2190199 NA other upstream 640525 523534 ~ 542502 (+)
G2190050 NA other upstream 805364 360931 ~ 362627 (+)
G2190881 NA other downstream 10918 1251666 ~ 1252951 (+)
G2191047 NA other downstream 440806 1681554 ~ 1682049 (+)
G2191616 NA other downstream 1006316 2247064 ~ 2247502 (+)
G2191994 NA other downstream 1519512 2760260 ~ 2762972 (+)
smad3b LOC107755098 other downstream 1652487 2892934 ~ 2915974 (+)

Expression


Co-expression Network