LOC110522690 (skor1)


Basic Information

Item Value
gene id LOC110522690
gene name skor1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3256395 ~ 3270508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969279.1
CCAGCAATGGAGTGTAATCCTCGTCTGCTACCTGCGACACGGGACTCCAGCTCTTCTCCACCGAGCTCCAAACAGGACCTCCCAACATTCAACCCCAACCTGAAACCCAACCAGGTCAGCGAGACCGCCCTGTATGGAATACCCATAGTCTGCCTGGTGCTGGACGGTCAGGAGAGACTGTGCCTGGCGCAGATCTCCAACACTCTGCTGAAGAACTACAGCTATAACGAGATCCACAACCGGCGCGTGGCGCTGGGAATCACCTGCGTGCAATGCACCCCGGTCCAGCTGGAGATTCTGAGGCGTGCGGGCGCCATGCCCATCTCCTCGAGGCGCTGTGGGATGATTACAAAGCGCGAGGCCGAGAGGCTTTGTAAATCATTTCTTGGAGCTCACAACCCTCCAAAATTACCGGAAAACTTCGCGTTTGACGTGTCCCACGAGTGCGCGTGGGGGAGCCGTGGTAACTTTATACCAGCCAGGTACAACAGCTCCCGAGCCAAGTGCATCAAGTGCTCCTTCTGTAACATGTATTTTTCTCCCAATAAGTTCATATTCCACTCTCACCGCACACCAGAGTCAAAGTACACCCAGCCAGACGCGGCTAACTTTAACTCCTGGAGGAGACACCTCAAACTGACCGACAAGGGCTCACCTGACGACGTGGCACATGCATGGGAGGACGTGAAGGCCATGTTCAACGGGGGCAGCCGGAAGAGAACGATGCCCGTGCACGGTCACGGGTCTGAGCGTTCTTTTCCATTGAAATCACATCAAGGACCTAGCAACCTCTCCCGGAGAGACTCACCGGAGATCCCCCCTAAAATCCTCCGCTGCGAAGACAACCGAGGAGGCATGGGGAGTATGAGTACCACGCGCAGCTATCCGGTTATCCCGGTGCCCAGTAAGAGCTTCGGTATGCTGCAGAATGTGAAGATTCCTCCGCCGCTTTACCCACATCCCTACGGGTTCCCGACATTCGGGCTGTTCCAGAAAAAGAATGATAGTGGTGGTGTGATGGAAGGAGAGCAAAACAAAGCCCACCTCTCCGGGGTCTTCTCCTGGCCTAGCACCAAGGACAGCGCCTACCACTCTTTCCCCATGTTCTGGCCTACTGCAGGTGGCCTGACCATGCCCCCCTACCCCCACCCCCAGCCACAGCCACAGGCCCAGCACAAACCGCACTCGGAGCTCCTGTGCGCCCGACAGAGTGATCTGGACGCATCCGAGCAGAGTGACAGAAGTAGCAACACTCCGAGGGACAGTCTGATGGACAGTGACCAGTGCTCTAGCACACAGTCCACCCGGAATGAGGACGACAAGTTTGGCGATGAGGCGAGGCCAATGGACTGTATAAGGCCAGTTCTATCACGGAAGATTAGCTACGTCTCTGCATTCAGACCCGTCATCAAAGACGCGGAGAGTATTGCCAAACTTTACGGTAACCGGGGGTCGTACAACGGGGCTCGAGCTGGCTACCTGTCACCAGATTTCCTGAGCGAGAGCTCGAGTTACAGGTCCGTGTCCCCCGGAAGCGTGGACAGTGTGGGAGAGACGGATGTGGACGTTGAAACCAATAAATCACAAGAGGATGAGGAGTCACTTCCGCACAACATTGAGGGCAGCAAGAGCCCCCTTGTACCCTTTCTAAACTTGGCACAGGGTGCTTCACTAAACGGCCTAGAATCCAAATCGGAGCCGGAACAAGCGGCTGTGGTCGACTCACAGAGAATGAATCTACCTCTACACGTGGTACTACTgtcttcagacagagagagacaggagaacaagaccaCGTCTATTGTTGAAATATATTCACCGGACAGGAGTGATATGCAACAAAGGAGAAGTCCATATGCTTTTGGTTCAGCACCGAATTACCGTAAAGATACCGTGGAATCGAAAGACGACTGTGTCAGTAGAGAGGAGCCGTCTTCGACAATGGAGGAGGTTGAAACGAAGTCTTGTGACGGCCAAAGCGGCGAGGAGAGCCCGAGAGTAGCTCTGAATGAGGGCGAGGCAACGCACAATGTTAGCAGAGTATTACAAACTCAGAAAGACATAGAAAACCTGGCAAAAGACGAATTGCAGAGACAGCTCGTTGAGCAAGTGGAGCTAAGGAAGAAATTGGAACGAGAATTCCAACATTTAAAAAATAATTTCCATCATCAGATGAAAAGGGAGCTGTCCTACAGGGAAGAGATGGTTCAGCAGCTTCATATTGTCAGAGAAGCTCACAACGCGCTACAACATTTCTCCTGTAAGATGCTGACTCCTCGACACTGCACTGGAACCTGCTCCTTCAAACCTCCTCTTCTACCACCCTAGTCCCTTCCCACAGTCCACCGTGGAGCCCCATCCGTTTGGAAAGCAAGACTATACCACCCTAGTCCCTTCCCACAGTCTGCCGTGGAGCTCCGTCAGTCTGGAAAGCAAGGCTACTTCTACCCACAGGACTACCACCACCCCGAAGACTACTATCGCCCCAAAGACTACCGCCCCCAAGACTACTACCGCCCCCAAGACTACTAAACCCCCAAAGACTACTACCACCTCGAAGACTACTACCACCCAGAAGACTTCTACCACCCAGAAGACTACTACCGCCCCCAAGACTACTAAACCCCCAAAGACTACTACCACCCCCAAGACTACTACCACCCCCAAGACTACTA
>XM_036969280.1
CCAGCAATGGAGTGTAATCCTCGTCTGCTACCTGCGACACGGGACTCCAGCTCTTCTCCACCGAGCTCCAAACAGGACCTCCCAACATTCAACCCCAACCTGAAACCCAACCAGGTCAGCGAGACCGCCCTGTATGGAATACCCATAGTCTGCCTGGTGCTGGACGGTCAGGAGAGACTGTGCCTGGCGCAGATCTCCAACACTCTGCTGAAGAACTACAGCTATAACGAGATCCACAACCGGCGCGTGGCGCTGGGAATCACCTGCGTGCAATGCACCCCGGTCCAGCTGGAGATTCTGAGGCGTGCGGGCGCCATGCCCATCTCCTCGAGGCGCTGTGGGATGATTACAAAGCGCGAGGCCGAGAGGCTTTGTAAATCATTTCTTGGAGCTCACAACCCTCCAAAATTACCGGAAAACTTCGCGTTTGACGTGTCCCACGAGTGCGCGTGGGGGAGCCGTGGTAACTTTATACCAGCCAGGTACAACAGCTCCCGAGCCAAGTGCATCAAGTGCTCCTTCTGTAACATGTATTTTTCTCCCAATAAGTTCATATTCCACTCTCACCGCACACCAGAGTCAAAGTACACCCAGCCAGACGCGGCTAACTTTAACTCCTGGAGGAGACACCTCAAACTGACCGACAAGGGCTCACCTGACGACGTGGCACATGCATGGGAGGACGTGAAGGCCATGTTCAACGGGGGCAGCCGGAAGAGAACGATGCCCGTGCACGGTCACGGGTCTGAGCGTTCTTTTCCATTGAAATCACATCAAGGACCTAGCAACCTCTCCCGGAGAGACTCACCGGAGATCCCCCCTAAAATCCTCCGCTGCGAAGACAACCGAGGAGGCATGGGGAGTATGAGTACCACGCGCAGCTATCCGGTTATCCCGGTGCCCAGTAAGAGCTTCGGTATGCTGCAGAATGTGAAGATTCCTCCGCCGCTTTACCCACATCCCTACGGGTTCCCGACATTCGGGCTGTTCCAGAAAAAGAATGATAGTGGTGGTGTGATGGAAGGAGAGCAAAACAAAGCCCACCTCTCCGGGGTCTTCTCCTGGCCTAGCACCAAGGACAGCGCCTACCACTCTTTCCCCATGTTCTGGCCTACTGCAGGTGGCCTGACCATGCCCCCCTACCCCCACCCCCAGCCACAGCCACAGGCCCAGCACAAACCGCACTCGGAGCTCCTGTGCGCCCGACAGAGTGATCTGGACGCATCCGAGCAGAGTGACAGAAGTAGCAACACTCCGAGGGACAGTCTGATGGACAGTGACCAGTGCTCTAGCACACAGTCCACCCGGAATGAGGACGACAAGTTTGGCGATGAGGCGAGGCCAATGGACTGTATAAGGCCAGTTCTATCACGGAAGATTAGCTACGTCTCTGCATTCAGACCCGTCATCAAAGACGCGGAGAGTATTGCCAAACTTTACGGTAACCGGGGGTCGTACAACGGGGCTCGAGCTGGCTACCTGTCACCAGATTTCCTGAGCGAGAGCTCGAGTTACAGGTCCGTGTCCCCCGGAAGCGTGGACAGTGTGGGAGAGACGGATGTGGACGTTGAAACCAATAAATCACAAGAGGATGAGGAGTCACTTCCGCACAACATTGAGGGCAGCAAGAGCCCCCTTGTACCCTTTCTAAACTTGGCACAGGGTGCTTCACTAAACGGCCTAGAATCCAAATCGGAGCCGGAACAAGCGGCTGTGGTCGACTCACAGAGAATGAATCTACCTCTACACGTGGTACTACTgtcttcagacagagagagacaggagaacaagaccaCGTCTATTGTTGAAATATATTCACCGGACAGGAGTGATATGCAACAAAGGAGAAGTCCATATGCTTTTGGTTCAGCACCGAATTACCGTAAAGATACCGTGGAATCGAAAGACGACTGTGTCAGTAGAGAGGAGCCGTCTTCGACAATGGAGGAGGTTGAAACGAAGTCTTGTGACGGCCAAAGCGGCGAGGAGAGCCCGAGAGTAGCTCTGAATGAGGGCGAGGCAACGCACAATGTTAGCAGAGTATTACAAACTCAGAAAGACATAGAAAACCTGGCAAAAGACGAATTGCAGAGACAGCTCGTTGAGCAAGTGGAGCTAAGGAAGAAATTGGAACGAGAATTCCAACATTTAAAAAATAATTTCCATCATCAGATGAAAAGGGAGCTGTCCTACAGGGAAGAGATGGTTCAGCAGCTTCATATTGTCAGAGCTCACAACGCGCTACAACATTTCTCCTGTAAGATGCTGACTCCTCGACACTGCACTGGAACCTGCTCCTTCAAACCTCCTCTTCTACCACCCTAGTCCCTTCCCACAGTCCACCGTGGAGCCCCATCCGTTTGGAAAGCAAGACTATACCACCCTAGTCCCTTCCCACAGTCTGCCGTGGAGCTCCGTCAGTCTGGAAAGCAAGGCTACTTCTACCCACAGGACTACCACCACCCCGAAGACTACTATCGCCCCAAAGACTACCGCCCCCAAGACTACTACCGCCCCCAAGACTACTAAACCCCCAAAGACTACTACCACCTCGAAGACTACTACCACCCAGAAGACTTCTACCACCCAGAAGACTACTACCGCCCCCAAGACTACTAAACCCCCAAAGACTACTACCACCCCCAAGACTACTACCACCCCCAAGACTACTA
>TU2507508
GCAGCAAGAGCCCCCTTGTACCCTTTCTAAACTTGGCACAGGGTGCTTCACTAAACGGCCTAGAATCCAAATCGGAGCCGGAACAAGCGGCTGTGGTCGACTCACAGAGAATGAATCTACCTCTACACGTGGTACTACTgtcttcagacagagagagacaggagaacaagaccaCGTCTATTGTTGAAATATATTCACCGGACAGGAGTGATATGCAACAAAGGAGAAGTCCATATGCTTTTGGTTCAGCACCGAATTACCGTAAAGATACCGTGGAATCGAAAGGTTGGATGTTGTTCTGTTCAAATGTTATAATAAAAAACATTTCGGGAAAAG

Function

symbol description
skor1 Enables SMAD binding activity and sequence-specific double-stranded DNA binding activity. Involved in negative regulation of BMP signaling pathway. Located in dendrite and neuronal cell body.

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969279.1 False 2675 mRNA 0.54 7 3256395 3270508
XM_036969280.1 False 2672 mRNA 0.54 7 3256395 3270508
TU2507508 True 336 lncRNA 0.45 2 3258016 3258713

Neighbor

gene id symbol gene type direction distance location
iqch LOC106584827 coding upstream 203787 2941093 ~ 3052608 (+)
smad3b LOC107755098 coding upstream 340421 2892934 ~ 2915974 (+)
smad6b smad6 coding upstream 395693 2811893 ~ 2860702 (+)
LOC118945783 NA coding upstream 419247 2832013 ~ 2837148 (+)
zwilch zwilch coding upstream 623111 2594442 ~ 2633284 (+)
LOC118945764 NA coding downstream 9 3270517 ~ 3271251 (+)
LOC110521158 LOC106584817 coding downstream 5933 3276441 ~ 3325034 (+)
tle3a LOC104946490 coding downstream 195788 3466296 ~ 3565245 (+)
ddb2 ddb2 coding downstream 418100 3688608 ~ 3726600 (+)
LOC110521165 fintrim coding downstream 513990 3784498 ~ 3796399 (+)
G2192166 NA non-coding upstream 7555 3241085 ~ 3248840 (+)
G2192161 NA non-coding upstream 48288 3203118 ~ 3208107 (+)
G2192154 NA non-coding upstream 85523 3169650 ~ 3170872 (+)
G2192147 NA non-coding upstream 93314 3162495 ~ 3163081 (+)
G2192132 NA non-coding upstream 121308 3134384 ~ 3135087 (+)
G2192203 NA non-coding downstream 37738 3308246 ~ 3308590 (+)
G2192205 NA non-coding downstream 46074 3316582 ~ 3316921 (+)
G2192186 NA non-coding downstream 54778 3325286 ~ 3332308 (+)
G2192245 NA non-coding downstream 194415 3464923 ~ 3465776 (+)
G2192258 NA non-coding downstream 199039 3469547 ~ 3470226 (+)
G2192059 NA other upstream 331930 2922901 ~ 2924465 (+)
G2191994 NA other upstream 493423 2760260 ~ 2762972 (+)
G2191616 NA other upstream 1008893 2247064 ~ 2247502 (+)
G2192425 LOC106584810 other downstream 639596 3910104 ~ 3910366 (+)
LOC110521161 LOC106584807 other downstream 664519 3931206 ~ 3937155 (+)
LOC118945757 LOC106584793 other downstream 1296243 4566366 ~ 4698448 (+)
G2193497 NA other downstream 1507192 4777700 ~ 4779264 (+)

Expression


Co-expression Network