LOC110521158 (LOC106584817)


Basic Information

Item Value
gene id LOC110521158
gene name LOC106584817
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3276441 ~ 3325034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969029.1
CTTGCtgctaaaaaaaaacaattttggaCTAGTTTTCAGTTATTTGTGGGCTGGTTTTGAGTGGTCATTGATATCTATACATGTGTTAGACCTGGAGGGGGCTGGCAACCCTGATCACGCATGCGCTAAAAGTTACAAGATGGCGGAGAGTGCGCAACTGAAGCAAATGGTGATGAGCCTTCGTGTTTCAGAGCTACAAGTGTTACTAGGCTACGCAGGACGCAACAAACACGGCCGCAAACATCAACTGTTGACCAAAGCCCTGCACCTCCTTAAGGCCGGCTGCAGCCCCGCTGTCCAGATGAAGGTGAAGGAGCTGTACAGACGCCGCTTCCCCGCCAAGATGCTGTCTCCGGTGGATCTGGCCCTGCCCAGTGTCCACTCCACCTCCAGCCTGCCCGGAGGCCTCACCTCGCTGGGGTTCGACAGCCACGGATCCCCCTCGCCTGGCTCTCTGCTGGTGCCCAAACACGAGCTGGGCCTTCACCCCGTACACCCTGACGTGAAGCTCCAGAGGCTGCCCTTCTACGACATGTTGGATGAGCTCATCAAACCCACCAGCCTGGcCTCAGACAACAGTCAGCGGTTTCAGGAGACGTGTTATGCCTTTGCGTTGACGCCCCAGCAGGTCCAGCAGATCAGCAGCTCCATggACATCTCTGGGACCAAGTGTGACTTTGCGGTGCAGGTTCAGTTAAGGTTTTGTTTGTCAGAGACGAGCTGTGCCCAGGAGGATCATTTCCCGTCCAACCTGTGTGTGAAAGTCAACAGCAAGCCCTGCAACCTCCCGAGCTACCTTCCTCCAACCAAAAACGGAGTGGAACCCAAACGGCCGAGTCGCCCCATCAACATCACGTCACTGGTCAGACTGTCCACCACAGTGCCCAACACTATCGTGGTGTCGTGGACCTCAGAGATAGGCAGGAATTTCTCCATGGCAGTCTACCTGGCGAGACAGCAGACATCCACAACCCTGCTACAGAGACTACGAGCCAAAGGCATCCGCAACCCAGACCACTCCAGAGCTCTCAtcaaAGAGAAGTTAACAGCTGACCCGGACAGTGAGATTGCGACCACCAGTCTACgagtctctctgctctgtccgCTGGGGAAGATGCGTCTGATGATCCCGTGCAGAGCGCTGACGTGTTCCCACCTCCAGTGTTTCGACGCTACGCTTTACATCCAGATGAATGAGAAGAAACCCACGTGGGTGTGTCCTGTCTGTGATCAGAAGGCCCCCTACCAACACCTCATCATCGACGGgttgtTCATGGAGATCCTGAACAGCTGTGAGGACTGTGATGAGATCCAGTTTAAAGAGGACGGGAACTGGTATCCCATGAGGTCGAAGAAGGAGGTCACAGAGGTATCTGCTTCATTCAACGGCGATGGCGAGTCGTGTCGGACAGTAGAATCGGAGCCCCACAGGAACAGCTCATCCCACAGCAGTACCAATAAGGTGGTGGTGATTGATCTGACTCTGGACAGCTCTTCGGACGACGATCTGGACGATGAGCCTCCTCTCAAGAGaccctgtccctcctcctcctccttgtccccTGCCTCACCGCCTATCAGCAAGGGCGTGTTGAACCTCCACAGCCAGGTATCTCCGGTGGCCAGAGCTCCCAGCATGCCTCCTGTTGAGACCAGCTAtatcccccctccaccccccctcatACAGGACTACAGCCACTACTACCACACCCCCAATGACCTGGACCTCAACTTCTTCTCATTCCTCCAGGGAGACaaccatcagcatTACAACATGGTGATGGCCGCAGCTGCGGCGGCCTCAGCCTCCGATGACCACGACTTGCTCCTGAACCGCTTCCTGCCCTATAGCTCCTCCCAGATGTTCCTGGACCAATCAGGGACCCCCGGCGGTGTGAGCAGCGCCCTGGCAGCAGCCAACGGGGGCAGCAACAGCGGTAGCAGCTCCAGTCTGGTGTCGTCAAGTAGTTTGAGAGAGAGGGATCGGGATAGGGAAAGGGACAGCAGGTCGAACGCAGTGGCGACAGTCATATATGGCTCCGTACCAGACGTGATCTCACTAGACTGAAGGGATGGGGCATCTGTCCGTACAGAACCGGCGGGAAAAACAACTGGAGGGAGAAAATAGAAACCGGAGTTTTGTTTTGTAAATAGACAACTAAAAGGGAAAGAAACAGTGCTATGTACAGAGAGGAAAAAATATCTATTTTAAATGTTACCGTAAACAAAATCCTGATGATGATGAGTAACttcaattgatttttttttttttttttttcttcttctgtggtttttTAAAAAACAGCCTCGTCACGTTTTCCCCGTTTTGATTATATGATATTATATATGACCTTTTTGTACTTCGTTTTCACTGTTTTTATTTCAATATTTACCCCCTGTCAACGGCATTATTTCTTGTCTCAAAACGCGTGTTTTTACTGCGCTTCGGCGCGAAAAGAGAATctgtccgttttttttttttttctgttttcgTCATCACTGTGGATTGTATTTTCTGTCAAAACATTCTGTGGTCAAATTCTATTGTATTTCTTTTATTATTTTCAAGGTATTATTTATGATGCTTTTAAGTTATGTTAGATCAATGTGTGCCGTTTTTTAAAAAGCATTGcttcttcttttctctccccccccaccacctcccTCTACATGTTATTGTTGTCGCTAGGATTACACAGGCTAGCCTGGATACcaagtctgtttgtgccatcattcCACTCCTCGTCATGACCAAACAATAAGTGGTTGAGGAGTGGAATGATGGCACAAactgactggcacccaggctatgcACGGGCTGGTTATAGATCCACTACTGTGGTTGAGGAGTGGAATGATGGCACAAactgactggcacccaggctatacACGGGCTGGTTATAGATCCACTACTGTGGTTGAGGAGTGGAATGATGGCACAAactgactggcacccaggctatacACGGGCTGGTTATAGATCCACTACTGTGGTTGAGGAGTGGAATGATGGCACAAactgactggcacccaggctatacACGGGCTGGTTATAGATCCACTACTGTGGTTGAGGAGTGGAATGATGGCACAAactgactggcacccaggctatacACGggctggttatatactactgtgGGTTGTCTGGTTTGtgctcctctctcatctctattTGGCTGAGGAAACCTTATTTTCCTGCCGAGTTCATCTTGTAGTTGTTTTCACGTAAGAAATACCATGCTGTATTGTCTGGTAAAAATAGTGTTGAAATAGCCGCCGTGCGTCCATTTTGGGGGATAAGGAAGACATAATATGATTTTAATTCagtttattattatattaaatgGAAGCATTTTACCTTTTCATGCAAGGTGCATCTTCCATTCAACACTATTTTTACCAGACAATACAGCATGGTATTTCTTACGTGAAAACAACTACAAGATGAACTCGGCAGGAAAATAAGGTTTCCTCAGCCAaatagagatgagagaggagcaCAAACCAGACAACCCACAGTAGTGGATCTATAACCAGCCCGTgtatagcctgggtgccagtcagtTTGTGCCATCATTCCACTTTCTCACTATTCACAAACAACCCACAGTAGTGGATCTATAACCAGCCCGTgtatagcctgggtgccagtcagtTTGTGCCATCATTCCACTTTCTCACTATTCACAAacgttgtttttttgttgttgttgaataaaACATACTTTTTTAAATGCTTTGGAGATGGGATCTGTAACACTCACTCCTTGAAGTGTCTCCCAA

Function

NR:

description
PREDICTED: E3 SUMO-protein ligase PIAS1-like

GO: NA

KEGG:

id description
K04706 PIAS1; E3 SUMO-protein ligase PIAS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969029.1 True 3786 mRNA 0.49 13 3276441 3325034

Neighbor

gene id symbol gene type direction distance location
LOC118945764 NA coding upstream 5190 3270517 ~ 3271251 (+)
LOC110522690 skor1 coding upstream 5933 3256395 ~ 3270508 (+)
iqch LOC106584827 coding upstream 223833 2941093 ~ 3052608 (+)
smad3b LOC107755098 coding upstream 360467 2892934 ~ 2915974 (+)
smad6b smad6 coding upstream 415739 2811893 ~ 2860702 (+)
tle3a LOC104946490 coding downstream 141262 3466296 ~ 3565245 (+)
ddb2 ddb2 coding downstream 363574 3688608 ~ 3726600 (+)
LOC110521165 fintrim coding downstream 459464 3784498 ~ 3796399 (+)
LOC118945791 LOC106584811 coding downstream 488341 3813375 ~ 3818776 (+)
LOC110521164 LOC106584811 coding downstream 502600 3827634 ~ 3831299 (+)
G2192166 NA non-coding upstream 27601 3241085 ~ 3248840 (+)
G2192161 NA non-coding upstream 68334 3203118 ~ 3208107 (+)
G2192154 NA non-coding upstream 105569 3169650 ~ 3170872 (+)
G2192147 NA non-coding upstream 113360 3162495 ~ 3163081 (+)
G2192186 NA non-coding downstream 252 3325286 ~ 3332308 (+)
G2192245 NA non-coding downstream 139889 3464923 ~ 3465776 (+)
G2192258 NA non-coding downstream 144513 3469547 ~ 3470226 (+)
G2192259 NA non-coding downstream 145916 3470950 ~ 3471954 (+)
G2192292 NA non-coding downstream 206624 3531658 ~ 3532127 (+)
G2192059 NA other upstream 351976 2922901 ~ 2924465 (+)
G2191994 NA other upstream 513469 2760260 ~ 2762972 (+)
G2191616 NA other upstream 1028939 2247064 ~ 2247502 (+)
G2192425 LOC106584810 other downstream 585070 3910104 ~ 3910366 (+)
LOC110521161 LOC106584807 other downstream 609993 3931206 ~ 3937155 (+)
LOC118945757 LOC106584793 other downstream 1241717 4566366 ~ 4698448 (+)
G2193497 NA other downstream 1452666 4777700 ~ 4779264 (+)

Expression


Co-expression Network