ddb2 (ddb2)


Basic Information

Item Value
gene id ddb2
gene name ddb2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3688608 ~ 3726600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968859.1
TCCAACATGCCACCTGCTGGCAAGAAGATGTAACACAGAGACGTTACAAAACACTGGACTTTCACTTACATAAAGCGCTTCTCACGtgtagtgtgtgtgcatgaaaAATAACAATTCAAGGAGGAAAAAGCAGCGCTACCGTATTACACTGAAATGGCACGGGCAAAGAAGGGTCCTTCAGAAGCATCTGAATCGAAGCAGAAGTCGAGGAGGCAGAATGGAGAAACGTCTGGGGCTGCAGGACAAACCATCTCCATGAAGCTTCGGCAGAAGAAGGACGGGAAGAACACATTGAAAACAGGGCCTGTTTTCCCAACCACCATAATCAAATCTTCAGTTGGGAAGAGAAGTGGACCAGGAAGCATCCTGCACTACATTTACCAGAGTACACTGGGGCAGAGCCTTCATTCTCAGATGAGACAGTGTCTCCTGGAGCCGTTTGTACGTTCCCTGTCCTCCTATAAGCTCCACCGTACAGCCAGTCCGTTTGACCGGCGGGTCACCTGTCTGGAGTGGCACCCCTCGCACCCCTCCACGCTGGCGGTCGGCTCCAAGGGAGGAGACGTTGTCCTCTGGGACTACAACGTGCTCAACAAGACCAGCTTCATACAAGGGAAAGGAGCCGGGGATTTTATTGGTGGGATGACGTTTAGCCTGACGGACCCGTCCAAGGTCTACCTGGCGTCTGGCGACGGTACGCTGACTGAGCAGAACTTTCAGGGCGGTCCAGGAACGGTTCTGTCCAGAGTCCAGGACTGTGGACACGATCACCACAATGTCTGTCTGTGGTACTGCTGTGTAGATGTGTCGTTGAGCAGACAGATGTTGGTGACCGGAGACAACATTGGACGAGTCTTATTGCTGGGCATGGATGGACAccaggtcttCAACGGGAAGCTGCACAAAGCCAAAGTGACCCATGCTGAATTCAACCCTCGCTGCGATTGGTTAATGGCGACAGCGTCCGTTGACCACACGGTGAAGCTATGGGACCTGAGGAACATCAAGGACAAGAACACTTACCTCCACGAGATGGTTCATGACAAAGCTGTTAACTCAGCCTACTTTAATCCAGTGGACTGCTCCAAGCTCCTGACCACGGACCAGTATGACCAGATCAGGGTGTACTCCTCTTCTGATTGGTCAACTCCTCAGCAGATTATCcagcacccacacagacagtttcAGCACCTCACACCAATCAAGGCCACGTGGCACCCTCTGTACGACCTGATGGTGGTTGGACGGTACCCTGACGAGAGGGTGTGTCCAGGTGCCCTGAGGACCATCGATATCTATGATGCCAACACAGGAGAGCTGGCATGCCAACTACTGGACCCCAACGCCCCTGGCATCATATCTGTCAACAAGTTCAATCCAATGGGAGATGTTTTAGGATCTGGGATGGGAGTGAACATCCTAGTGTGGAACAGAGTGGAGACATTGGCTGGtaagcagcagagaggagagctaCAACAGGAAGCAGGAGTCCAGGTTGGCAGAGGTCGAGGCCagcggaggagaagaggggagactCGGAGGGGGGGAGGGACGGGGGGACGGGGGCGAGAGGATGAGGACGACATTGGGAAGCTGAAGAAGAAGCTATCTTTGTCCTCGGGGACCAGAACCAGAACATCCAGGGACACAGAAGGGTCCAAATAAATaatcagggagaaagagagaggtttattgtgtgtttcctttattttggtagttacccGACAATGTCATA
>XM_036968860.1
TCCAACATGCCACCTGCTGGCAAGAAGATGTAACACAGAGACGTTACAAAACACTGGACTTTCACTTACATAAAGCGCTTCTCACGtgtagtgtgtgtgcatgaaaAATAACAATTCAAGGAGGAAAAAGCAGCGCTACCGTATTACACTGAAATGGCACGGGCAAAGAAGGGTCCTTCAGAAGCATCTGAATCGAAGCAGAAGTCGAGGAGGCAGAATGGAGAAACGTCTGGGGCTGCAGGACAAACCATCTCCATGAAGCTTCGGCAGAAGAAGGACGGGAAGAACACATTGAAAACAGGGCCTGTTTTCCCAACCACCATAATCAAATCTTCAGTTGGGAAGAGAAGTGGACCAGGAAGCATCCTGCACTACATTTACCAGAGTACACTGGGGCAGAGCCTTCATTCTCAGATGAGACAGTGTCTCCTGGAGCCGTTTGTACGTTCCCTGTCCTCCTATAAGCTCCACCGTACAGCCAGTCCGTTTGACCGGCGGGTCACCTGTCTGGAGTGGCACCCCTCGCACCCCTCCACGCTGGCGGTCGGCTCCAAGGGAGGAGACGTTGTCCTCTGGGACTACAACGTGCTCAACAAGACCAGCTTCATACAAGGGGTTGGTCCTGGAGGCTCTATTACAGCTCTGAAGTTTAACCCGTACAACCCCACTCAGCTGTTCACCTCCTCTGTCAGGGGAACCACCACGCTGCAGGATTTCAATGGGACCACTCTAAGGGTGTTTACCAACACAGAGTCATGGGATCTGTGGTACTGCTGTGTAGATGTGTCGTTGAGCAGACAGATGTTGGTGACCGGAGACAACATTGGACGAGTCTTATTGCTGGGCATGGATGGACAccaggtcttCAACGGGAAGCTGCACAAAGCCAAAGTGACCCATGCTGAATTCAACCCTCGCTGCGATTGGTTAATGGCGACAGCGTCCGTTGACCACACGGTGAAGCTATGGGACCTGAGGAACATCAAGGACAAGAACACTTACCTCCACGAGATGGTTCATGACAAAGCTGTTAACTCAGCCTACTTTAATCCAGTGGACTGCTCCAAGCTCCTGACCACGGACCAGTATGACCAGATCAGGGTGTACTCCTCTTCTGATTGGTCAACTCCTCAGCAGATTATCcagcacccacacagacagtttcAGCACCTCACACCAATCAAGGCCACGTGGCACCCTCTGTACGACCTGATGGTGGTTGGACGGTACCCTGACGAGAGGGTGTGTCCAGGTGCCCTGAGGACCATCGATATCTATGATGCCAACACAGGAGAGCTGGCATGCCAACTACTGGACCCCAACGCCCCTGGCATCATATCTGTCAACAAGTTCAATCCAATGGGAGATGTTTTAGGATCTGGGATGGGAGTGAACATCCTAGTGTGGAACAGAGTGGAGACATTGGCTGGtaagcagcagagaggagagctaCAACAGGAAGCAGGAGTCCAGGTTGGCAGAGGTCGAGGCCagcggaggagaagaggggagactCGGAGGGGGGGAGGGACGGGGGGACGGGGGCGAGAGGATGAGGACGACATTGGGAAGCTGAAGAAGAAGCTATCTTTGTCCTCGGGGACCAGAACCAGAACATCCAGGGACACAGAAGGGTCCAAATAAATaatcagggagaaagagagaggtttattgtgtgtttcctttattttggtagttacccGACAATGTCATA

Function

symbol description
ddb2 Predicted to enable DNA binding activity. Predicted to contribute to damaged DNA binding activity. Predicted to be involved in DNA repair and response to UV. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in central nervous system and neurons. Human ortholog(s) of this gene implicated in xeroderma pigmentosum and xeroderma pigmentosum group E. Orthologous to human DDB2 (damage specific DNA binding protein 2).

NR:

description
PREDICTED: DNA damage-binding protein 2

GO: NA

KEGG:

id description
K10140 DDB2; DNA damage-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968859.1 False 1735 mRNA 0.52 11 3688608 3726600
XM_036968860.1 True 1714 mRNA 0.52 11 3688608 3726600

Neighbor

gene id symbol gene type direction distance location
tle3a LOC104946490 coding upstream 123363 3466296 ~ 3565245 (+)
LOC110521158 LOC106584817 coding upstream 363574 3276441 ~ 3325034 (+)
LOC118945764 NA coding upstream 417357 3270517 ~ 3271251 (+)
LOC110522690 skor1 coding upstream 418100 3256395 ~ 3270508 (+)
iqch LOC106584827 coding upstream 636000 2941093 ~ 3052608 (+)
LOC110521165 fintrim coding downstream 57898 3784498 ~ 3796399 (+)
LOC118945791 LOC106584811 coding downstream 86775 3813375 ~ 3818776 (+)
LOC110521164 LOC106584811 coding downstream 101034 3827634 ~ 3831299 (+)
LOC118945778 NA coding downstream 168552 3895152 ~ 3896777 (+)
LOC110521161 LOC106584807 coding downstream 204606 3931206 ~ 3937155 (+)
G2192295 NA non-coding upstream 151156 3537156 ~ 3537452 (+)
G2192294 NA non-coding upstream 152634 3535159 ~ 3535974 (+)
G2192292 NA non-coding upstream 156481 3531658 ~ 3532127 (+)
G2192259 NA non-coding upstream 216654 3470950 ~ 3471954 (+)
G2192258 NA non-coding upstream 218382 3469547 ~ 3470226 (+)
G2192356 NA non-coding downstream 19626 3746226 ~ 3747574 (+)
G2192366 NA non-coding downstream 71811 3798411 ~ 3801679 (+)
G2192396 NA non-coding downstream 109048 3835648 ~ 3839595 (+)
G2192404 NA non-coding downstream 131311 3857911 ~ 3858172 (+)
G2192059 NA other upstream 764143 2922901 ~ 2924465 (+)
smad3b LOC107755098 other upstream 779426 2892934 ~ 2915974 (+)
G2191994 NA other upstream 925636 2760260 ~ 2762972 (+)
G2191616 NA other upstream 1441106 2247064 ~ 2247502 (+)
G2192425 LOC106584810 other downstream 183504 3910104 ~ 3910366 (+)
LOC118945757 LOC106584793 other downstream 840151 4566366 ~ 4698448 (+)
G2193497 NA other downstream 1051100 4777700 ~ 4779264 (+)

Expression


Co-expression Network