LOC110521164 (LOC106584811)


Basic Information

Item Value
gene id LOC110521164
gene name LOC106584811
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3827634 ~ 3831299 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598596.2
ggcagttaacccactgttcccctgagcaagacagttaacccactgttcagttgaatacatttcagttgaatacatttcagttgaacaacggactaggtatcccttAGCTACTGTTGCTAACAGCCATTACTAAATAAagtcaacaattgtttacattctGTTTTTTATCGAAACCGTATTGATGATAAATCCACCGTGTTTCAGGACCAAAGGTCCCCTGGGAGAGCCAGAGTGTATCAGAGGAATCCTCATAGACGCTGCCAAACATCTGCAATCACTCAAGTTTGGAATCTGGAAGAAGATGGCAGACATTGTCCAATGGGTCCCCATAACCCTGGACCCcaacacagcccagtccaacCTCAGCTTCTCTAAGGAGTTCAGCATGGTGAGGTACAGCAAAAAGAGACTCCTGCCAGACAACCCCGAGCGCCTTACCAGCCGTATCTCTGTCCTGGGAGCGACAGGTTTCACCTCCGGAAGACACAGCTGGACCGTAGAGGTGGGCCAGAGCAGAGACTGGTACATCGGAGTCGCCCGAGAGTCCATCAAACGCAAGTCCACCATCTTCCTCAACCCTGCTGAGGGATTCTGGGTAATCGGGTTGTGTAACGGGGAGACGTACTGGGCCCAGACGTCCCCGCGGACGCGCCTGGacgtgaagagagagaggaagccgTGGAGAATCACTATAGAGCTGGACTACGACCGAGGGAAGGTGCTGTTTCTGAACGCAGTAGATTCAACACTGATACACATGTTCAGAGAGAAGTTCACTGAGAGGATCTTTCCTTATTTTGCTCCTGGGATGTATGAGGAGGGAAACACCTCCCGTCCCCTGACCATCTGTCCCCTGACTATATCTATAGAGGTACTGGACCAGATTATACTACCATAACACCTCCCGTCCCCTTACCATCTGTCCCCTGACCATCTGTCCCCTGACCATCTGTCCCCTGACCATCTATCCCCTCACCATCTGTCCCCTGACCGTCTGTCCCCTGACCATCTGTCCCATGACCATCTCTCCCCTGACCATCTGTCCTCTCACCATCTGTCCCCTGACCAGCCATTTGTAATCACCATCACTATTCAGTACTCAAGTGTGCAAAAGATGAATAGTCAACCATATTATAATTATAGCCATTGATAAAGGTCAGAGGTCTGAAAATGTTTAGTAGCAAACCAACTAGTTGATCTTGTGTATTTGTGACCATGCGTGTTTATAATAAACTTTGTATACTTATAGAAGGTACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAAAATATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTCATAAAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTCATAAAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCGACGAACAGGTTGAACTAATTTAGCGGTAATCGATTTAAATAAAACTATCTATTGTATTTAAAAAGGTCAATAATCCTCTTTCTCTTTGGGTTTGGTCTTCTTCTACTTGTCCATTTCTTTGAGTTTGGAGTCCAGCTTCCTGTGTAGATGGGCCTTGTTGTTAGGATCTACAGACTTGTCCTTGTGTTCACCACCAGCATACAGAACCCCTTCTTTCCTGATCCTCATCCTGGCATTGGCCCTGGCTTGGTGTCCACACCCATGGACCTGGAGGAGATACAACACAGTTACATAGAGGAgttacaacacagttacacagttacATAGAGGAGTTACAACACAGTTACATAGAGGAgttacaacacagttacacagttacATGTATAGGATATTTTTTTCACAAGCAGTGTATTGAATATAGTGGGTGGAGTAAGAACTCACCAGCACTCTGTATTATACCCAGCAGAAAAGACCAATTTAAGTTTTGTAGACTCTTGAGTAATTCCAATTAcacatatttgtattttattaaaaGTGTATTTCTTTACATATAGCCTAAACAACAGCGTTCAACATGCCAGTATGGGTGTAAACTTTCTAGAGAAATGTTGGTATGAATAAATCAATGTTACAAACAAAAAGTGTGTCAGATTATCCATATATTTTATTAAATGTGATTGAAATGCTGTGAAAAACAGTTGTACTGTACTagagtacaaaaaaaaaaaagatattccCAAAGTTTAGCATGTCTTTGTAGgaggactcttattttgaaaaaaGAATTCCGCCATGTACTGCCAGCATAATATCTTGCTGCCAGGAGAACTTAATGACCCATTATAAAAATTAAAACAGGAACTGGTTTGGAAATCCAGCCAATGATAGTACGACCTCCGTTTCATCTAGCCAATGACAGTTCAACACACGTTTTCTCTCTCTGAAcgcatttcaaaataaaagtaatgTGTACAGTAGCAAGTGAGGATTAAATAATGCAAATAAGATGATTTATAACAATCTGAAAATACATGCGTGTTGAATATAA
>XR_005040909.1
ggcagttaacccactgttcccctgagcaagacagttaacccactgttcagttgaatacatttcagttgaatacatttcagttgaacaacggactaggtatcccttAGCTACTGTTGCTAACAGCCATTACTAAATAAagtcaacaattgtttacattctGTTTTTTATCGAAACCGTATTGATGATAAATCCACCGTGTTTCAGGACCAAAGGTCCCCTGGGAGAGCCAGAGTGTATCAGAGGAATCCTCATAGACGCTGCCAAACATCTGCAATCACTCAAGTTTGGAATCTGGAAGAAGATGGCAGACATTGTCCAATGGGTCCCCATAACCCTGGACCCcaacacagcccagtccaacCTCAGCTTCTCTAAGGAGTTCAGCATGGTGAGGTACAGCAAAAAGAGACTCCTGCCAGACAACCCCGAGCGCCTTACCAGCCGTATCTCTGTCCTGGGAGCGACAGGTTTCACCTCCGGAAGACACAGCTGGACCGTAGAGGTGGGCCAGAGCAGAGACTGGTACATCGGAGTCGCCCGAGAGTCCATCAAACGCAAGTCCACCATCTTCCTCAACCCTGCTGAGGGATTCTGGGTAATCGGGTTGTGTAACGGGGAGACGTACTGGGCCCAGACGTCCCCGCGGACGCGCCTGGacgtgaagagagagaggaagccgTGGAGAATCACTATAGAGCTGGACTACGACCGAGGGAAGGTGCTGTTTCTGAACGCAGTAGATTCAACACTGATACACATGTTCAGAGAGAAGTTCACTGAGAGGATCTTTCCTTATTTTGCTCCTGGGATGTATGAGGAGGGAAACACCTCCCGTCCCCTGACCATCTGTCCCCTGACTATATCTATAGAGGTACTGGACCAGATTATACTACCATAACACCTCCCGTCCCCTTACCATCTGTCCCCTGACCATCTGTCCCCTGACCATCTGTCCCCTGACCATCTATCCCCTCACCATCTGTCCCCTGACCGTCTGTCCCCTGACCATCTGTCCCATGACCATCTCTCCCCTGACCATCTGTCCTCTCACCATCTGTCCCCTGACCAGCCATTTGTAATCACCATCACTATTCAGTACTCAAGTGTGCAAAAGATGAATAGTCAACCATATTATAATTATAGCCATTGATAAAGGTCAGAGGTCTGAAAATGTTTAGTAGCAAACCAACTAGTTGATCTTGTGTATTTGTGACCATGCGTGTTTATAATAAACTTTGTATACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTCATAAAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCCTTATATGGTGTACTTATAGAAGATACCGACGAACAGGTTGAACTAATTTAGCGGTAATCGATTTAAATAAAACTATCTATTGTATTTAAAAAGGTCAATAATCCTCTTTCTCTTTGGGTTTGGTCTTCTTCTACTTGTCCATTTCTTTGAGTTTGGAGTCCAGCTTCCTGTGTAGATGGGCCTTGTTGTTAGGATCTACAGACTTGTCCTTGTGTTCACCACCAGCATACAGAACCCCTTCTTTCCTGATCCTCATCCTGGCATTGGCCCTGGCTTGGTGTCCACACCCATGGACCTGGAGGAGATACAACACAGTTACATAGAGGAgttacaacacagttacacagttacATAGAGGAGTTACAACACAGTTACATAGAGGAgttacaacacagttacacagttacATGTATAGGATATTTTTTTCACAAGCAGTGTATTGAATATAGTGGGTGGAGTAAGAACTCACCAGCACTCTGTATTATACCCAGCAGAAAAGACCAATTTAAGTTTTGTAGACTCTTGAGTAATTCCAATTAcacatatttgtattttattaaaaGTGTATTTCTTTACATATAGCCTAAACAACAGCGTTCAACATGCCAGTATGGGTGTAAACTTTCTAGAGAAATGTTGGTATGAATAAATCAATGTTACAAACAAAAAGTGTGTCAGATTATCCATATATTTTATTAAATGTGATTGAAATGCTGTGAAAAACAGTTGTACTGTACTagagtacaaaaaaaaaaaagatattccCAAAGTTTAGCATGTCTTTGTAGgaggactcttattttgaaaaaaGAATTCCGCCATGTACTGCCAGCATAATATCTTGCTGCCAGGAGAACTTAATGACCCATTATAAAAATTAAAACAGGAACTGGTTTGGAAATCCAGCCAATGATAGTACGACCTCCGTTTCATCTAGCCAATGACAGTTCAACACACGTTTTCTCTCTCTGAAcgcatttcaaaataaaagtaatgTGTACAGTAGCAAGTGAGGATTAAATAATGCAAATAAGATGATTTATAACAATCTGAAAATACATGCGTGTTGAATATAA

Function

NR:

description
zinc-binding protein A33-like isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598596.2 False 2642 mRNA 0.41 2 3827634 3831299
XR_005040909.1 True 2502 mRNA 0.42 3 3827634 3831299

Neighbor

gene id symbol gene type direction distance location
LOC118945791 LOC106584811 coding upstream 8858 3813375 ~ 3818776 (+)
LOC110521165 fintrim coding upstream 31235 3784498 ~ 3796399 (+)
ddb2 ddb2 coding upstream 101034 3688608 ~ 3726600 (+)
tle3a LOC104946490 coding upstream 262389 3466296 ~ 3565245 (+)
LOC110521158 LOC106584817 coding upstream 502600 3276441 ~ 3325034 (+)
LOC118945778 NA coding downstream 63853 3895152 ~ 3896777 (+)
LOC110521161 LOC106584807 coding downstream 99907 3931206 ~ 3937155 (+)
LOC110520937 tmem80 coding downstream 126934 3958233 ~ 4072671 (+)
LOC110521167 eps8l2 coding downstream 248740 4080039 ~ 4175391 (+)
LOC110521168 fadsd5 coding downstream 382286 4213585 ~ 4227030 (+)
G2192366 NA non-coding upstream 25955 3798411 ~ 3801679 (+)
G2192356 NA non-coding upstream 80060 3746226 ~ 3747574 (+)
G2192295 NA non-coding upstream 290182 3537156 ~ 3537452 (+)
G2192294 NA non-coding upstream 291660 3535159 ~ 3535974 (+)
G2192396 NA non-coding downstream 4349 3835648 ~ 3839595 (+)
G2192404 NA non-coding downstream 26612 3857911 ~ 3858172 (+)
G2192406 NA non-coding downstream 28514 3859813 ~ 3860648 (+)
G2192407 NA non-coding downstream 29714 3861013 ~ 3862390 (+)
G2192410 NA non-coding downstream 45227 3876526 ~ 3878264 (+)
iqch LOC106584827 other upstream 775182 2941093 ~ 3052608 (+)
G2192059 NA other upstream 903169 2922901 ~ 2924465 (+)
smad3b LOC107755098 other upstream 918452 2892934 ~ 2915974 (+)
G2191994 NA other upstream 1064662 2760260 ~ 2762972 (+)
G2192425 LOC106584810 other downstream 78805 3910104 ~ 3910366 (+)
LOC118945757 LOC106584793 other downstream 735452 4566366 ~ 4698448 (+)
G2193497 NA other downstream 946401 4777700 ~ 4779264 (+)
LOC110521176 LOC106584785 other downstream 1162103 4970661 ~ 4994824 (+)

Expression


Co-expression Network