LOC118945778


Basic Information

Item Value
gene id LOC118945778
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3895152 ~ 3896777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040865.1
taggggtgtgtccagggagaactagcacggttcagtaggggtgtgtccagggagaactagcacggttcagtaggggtgtgtccagggagaactaATGTGGTTCAGTAGGGGTAGTaggggtgtgtccagggagaactaacatggttcaTaggggtgtgtccagggagaactaacatggttcagtaggggtgtgtccagggagaactagcacggttcagtaggggtgtgtccagggagaactaATGTGGTTCAGTAGGGGTAGTaggggtgtgtccagggagaactaacatggttcagtaggggtgtgtccagggagaactaATGTGGTTCAGTAGGGGAGTGTCCAGGGAAAACTAGCATGGTTCAGTAGGGGAGTGTCCAGGGAAAACTAGCATGGTTCAGTAGGGGTAGTaggggtgtgtccagggagaactaACATGGTTCAGTAGGGGTAGTGggggtgtgtccagggagaactaacatggttcagtaggggtgtgtccagggagaactaATGTGGTTCAGTAGGGGGTAGTGggggtgtgtccagggagaactagcatggttcagtaggggtgtgtccagggagaactagcacggttcagtaggggtgtgtccagggagaactaatgtggttcagtaggggtgtgtccagggagaacGAACATGGTTCAGTAGGGGTGCGTCCAGGGAGAACTAGCATGGTTCAGTAGGGGTGCGTCCAGGGAGAACTAGCGTTGTTTAGTAGGGGTGCGTCCAGGGAGAACTAGCGTTGTTTAGTaggggtgtgtccagggagaactagcgtggttcagtaggggtgtgtccagggagaactagCATGGTTCAGTAAGGGTTGTaggggtgtgtccagggagaactagcatggttcagtaggggtgtgtccagggagaactagcacggttcagtaggggtgtgtccagggagaactagCATTGTTCAGTaggggtgtgtccagggagaactagcatggttcagtaggggtgtgtccagggagaactagCATGGTTCAGTAGAGGTTAGTaggggtgtgtccagggagaactagCACGGTTCAGTAGGGGAGTGTCCAGGGAGAACTAGCACGGTTCAGTaggggtgtgtccagggagaactagCATTGTTCAGTaggggtgtgtccagggagaactagcatggttcagtaggggtgtgtccagggagaactagcatggttcagtaggggtgtgtccagggagaactagTATGGTTCAGTAGGGGCGTGTCCAGGGAGAACTAGCACGGTTCAGTAGGGGAGTGTCCAGGGAGAACTAGCACGGTTCAGTAGGGGTAGTAGGGGCGTGTCCAGGGAGAACTAGCATGGTTCAGTAGGGGGTAGTGggggtgtgtccaggga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040865.1 True 1396 mRNA 0.54 2 3895152 3896777

Neighbor

gene id symbol gene type direction distance location
LOC110521164 LOC106584811 coding upstream 63853 3827634 ~ 3831299 (+)
LOC118945791 LOC106584811 coding upstream 76376 3813375 ~ 3818776 (+)
LOC110521165 fintrim coding upstream 98753 3784498 ~ 3796399 (+)
ddb2 ddb2 coding upstream 168552 3688608 ~ 3726600 (+)
tle3a LOC104946490 coding upstream 329907 3466296 ~ 3565245 (+)
LOC110521161 LOC106584807 coding downstream 34429 3931206 ~ 3937155 (+)
LOC110520937 tmem80 coding downstream 61456 3958233 ~ 4072671 (+)
LOC110521167 eps8l2 coding downstream 183262 4080039 ~ 4175391 (+)
LOC110521168 fadsd5 coding downstream 316808 4213585 ~ 4227030 (+)
LOC110521171 NA coding downstream 343273 4175714 ~ 4243996 (+)
G2192369 NA non-coding upstream 8827 3882995 ~ 3886325 (+)
G2192410 NA non-coding upstream 16888 3876526 ~ 3878264 (+)
G2192407 NA non-coding upstream 32762 3861013 ~ 3862390 (+)
G2192406 NA non-coding upstream 34504 3859813 ~ 3860648 (+)
G2192404 NA non-coding upstream 36980 3857911 ~ 3858172 (+)
G2192422 NA non-coding downstream 11678 3908455 ~ 3908766 (+)
G2192423 NA non-coding downstream 12024 3908801 ~ 3909130 (+)
G2192424 NA non-coding downstream 12662 3909439 ~ 3909642 (+)
G2192427 NA non-coding downstream 18807 3915584 ~ 3915808 (+)
G2192428 NA non-coding downstream 19279 3916056 ~ 3916561 (+)
iqch LOC106584827 other upstream 842700 2941093 ~ 3052608 (+)
G2192059 NA other upstream 970687 2922901 ~ 2924465 (+)
smad3b LOC107755098 other upstream 985970 2892934 ~ 2915974 (+)
G2191994 NA other upstream 1132180 2760260 ~ 2762972 (+)
G2192425 LOC106584810 other downstream 13327 3910104 ~ 3910366 (+)
LOC118945757 LOC106584793 other downstream 669974 4566366 ~ 4698448 (+)
G2193497 NA other downstream 880923 4777700 ~ 4779264 (+)
LOC110521176 LOC106584785 other downstream 1096625 4970661 ~ 4994824 (+)

Expression


Co-expression Network