LOC110521161 (LOC106584807)


Basic Information

Item Value
gene id LOC110521161
gene name LOC106584807
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3931206 ~ 3937155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598587.2
CGAGAGGGGATTTATTTCCGGGTTTCAGGACGGAGATGGCGTTGCCATGGTATTCGAAGAAAAGCCCGCAAAGCAAACACTGCCTTTGGCTTAAGCTAGCTAATGAACTAGACGACGGTGACGGCTCAATACTTCGTCCAACCCGTAAAAAAAGGGAGGACTAGATGGCTAGATTGGGAAGATCATGATGAAGCTGAAAACCTGTCTTGTATTCTCGTCTCAAAGTGACTCCAGTCCCATCTGTTCAGTTTGGCTACCAGCAGATTTAGGACTGAAGGGCTCTCTGCCTGGATGACAAGCACACAGCCTACGTCCCTGAACACTGGTGAAATTGCACAGGAACGAAGAAGATGGAAGGACCTCTGAGTTTTAATTTTTTGTTTTAACAGAACATGAAATTTGACTGTAATTAGGAGTTGAATGAATGTTTTATAATACTAAATGAAGATTTAAAGGCATCTAAACATCAGTGGGTTGTGGAAACCAAAGTAAAGCTGGTTACCAGGCTCAAGGTGGGGAGACGGGTAGCCTGAAGGGCTAGCAACCGGAGGGTCGACGGACTGAAATCCAGAGCCCTATACCGGAGACGGAGAAGCTAGAGGCTGTGGACGTGTGAAGTTAATCCCAGCTGTGTGCAGGTGTTCCTGGGCTATGTAGCCAGACTTACCCCCGAGCATGCTCCAGACCAACAACTACTCGCTGGTCCTTCTGGTCCAGCTGGGTCTGCTGACCTATGACCTGTTCGTCAACTCCTTCAGCGAGCTGCTCAGGGCAGCGCCCGTCATCCAGCTAGTGCTGTTCATTATCCAGGATATAGCCGTCCTGTTCAACGTGATCATCATTCTGCTGATGATGTTCAACACGTACGTGTTCCAGGTCGGCCTGGTCGCTCTGCTACTGGAGAGGTTTAAAGGCTTGCTGGTGCTGTCTGCCATCTACCTCACTCTCAGCATCTCCTTTCACTGCTGGGTAGTGAACCTGAGATGGCTGGAATCGAATCGTTTCATCTGGACGAACGGCCTGCGGGTCCTCTTCGTCTTCCAGAGGGTTGCTGCAGTTTTGTATTTCTACGTGTACAAACGGACAGCAGAGTGTCTGGGCGACCCGCGGCTCTATCAGGATTCTGTCTGGCTGAGGGATGCCTTTGCCAGAGCTCGTCAGTGAGAAGGAGGAAATGGAAGGAacaattacacccccccccccaaaatgactTATTACCAGGCGAGGCCTGCCAGGCTCTGTGGTGACTCACTTGCCTGGGTGAGCCATGTTCGTTAGGCATGAAACTGAAACGGGGAGGGACTTCCCTggccttgtccaataagaaatggcCATTATTGTTTTCTCGCTTCAAAGCGGTTTGCCCAACTGAAAATGACTCGGGGTTAGGATGGAGCTGACGGAGAAGTGAGAAACGGCAATGGGTTTGTACAGCAGGATGGATCAAGTCAATGTACCACACTACATGAATATGGACTAATGTTGTAACAAGAAGACAAGACACTAAAGGACAATCTGAGGcagatatttttttaaacagtacatttataatGACAGCTATTAATTTAGTGTTTTTACTAAGATGGAATAAATtagcatcccaaattgcaccctattccctaatatagtgcactaaaTGGCGAATAGAATGCATTTTGGGATGCACGCCTGGTTCTGTGAACAACAGGTTCTGTGAACAACAGTGTATAAGAGTTGTTACTGGTCCCCTCTCAGGTGAGAGAGGGGAAGTCCTGGGGCTCGACTCCATCCAGTCTGTGTTGTAGCATCAAGGTCATTTCCTGGTGAGGGCCACGTTTACCGTGAAGGAAGTCTACGCTATAATGCTGATCTTCTGCACTACACATTGAATGAAGCCTCTGGTTCAGTTTGTCCTGTAGATAAGATGTGCTGTTTACAAAGTTGATGGATATTTGTTTTTCAAAGTTCAAATTTTCAATCAAACACTTTttatatctttttttattttataaaaataaatgttttgttttcttaaCTCGT
>XM_021598589.2
TATTTCCGGGTTTCAGGACGGAGATGGCGTTGCCATGGTATTCGAAGAAAAGCCCGCAAAGCAAACACTGCCTTTGGCTTAAGCTAGCTAATGAACTAGACGACGGTGACGGCTCAATACTTCGTCCAACCCGTAAAAAAAGCCGGAGACGGAGAAGCTAGAGGCTGTGGACGTGTGAAGTTAATCCCAGCTGTGTGCAGGTGTTCCTGGGCTATGTAGCCAGACTTACCCCCGAGCATGCTCCAGACCAACAACTACTCGCTGGTCCTTCTGGTCCAGCTGGGTCTGCTGACCTATGACCTGTTCGTCAACTCCTTCAGCGAGCTGCTCAGGGCAGCGCCCGTCATCCAGCTAGTGCTGTTCATTATCCAGGATATAGCCGTCCTGTTCAACGTGATCATCATTCTGCTGATGATGTTCAACACGTACGTGTTCCAGGTCGGCCTGGTCGCTCTGCTACTGGAGAGGTTTAAAGGCTTGCTGGTGCTGTCTGCCATCTACCTCACTCTCAGCATCTCCTTTCACTGCTGGGTAGTGAACCTGAGATGGCTGGAATCGAATCGTTTCATCTGGACGAACGGCCTGCGGGTCCTCTTCGTCTTCCAGAGGGTTGCTGCAGTTTTGTATTTCTACGTGTACAAACGGACAGCAGAGTGTCTGGGCGACCCGCGGCTCTATCAGGATTCTGTCTGGCTGAGGGATGCCTTTGCCAGAGCTCGTCAGTGAGAAGGAGGAAATGGAAGGAacaattacacccccccccccaaaatgactTATTACCAGGCGAGGCCTGCCAGGCTCTGTGGTGACTCACTTGCCTGGGTGAGCCATGTTCGTTAGGCATGAAACTGAAACGGGGAGGGACTTCCCTggccttgtccaataagaaatggcCATTATTGTTTTCTCGCTTCAAAGCGGTTTGCCCAACTGAAAATGACTCGGGGTTAGGATGGAGCTGACGGAGAAGTGAGAAACGGCAATGGGTTTGTACAGCAGGATGGATCAAGTCAATGTACCACACTACATGAATATGGACTAATGTTGTAACAAGAAGACAAGACACTAAAGGACAATCTGAGGcagatatttttttaaacagtacatttataatGACAGCTATTAATTTAGTGTTTTTACTAAGATGGAATAAATtagcatcccaaattgcaccctattccctaatatagtgcactaaaTGGCGAATAGAATGCATTTTGGGATGCACGCCTGGTTCTGTGAACAACAGGTTCTGTGAACAACAGTGTATAAGAGTTGTTACTGGTCCCCTCTCAGGTGAGAGAGGGGAAGTCCTGGGGCTCGACTCCATCCAGTCTGTGTTGTAGCATCAAGGTCATTTCCTGGTGAGGGCCACGTTTACCGTGAAGGAAGTCTACGCTATAATGCTGATCTTCTGCACTACACATTGAATGAAGCCTCTGGTTCAGTTTGTCCTGTAGATAAGATGTGCTGTTTACAAAGTTGATGGATATTTGTTTTTCAAAGTTCAAATTTTCAATCAAACACTTTttatatctttttttattttataaaaataaatgttttgttttcttaaCTCGT
>XM_021598592.2
TATTTCCGGGTTTCAGGACGGAGATGGCGTTGCCATGGTATTCGAAGAAAAGCCCGCAAAGCAAACACTGCCTTTGGCTTAAGCTAGCTAATGAACTAGACGACGGTGACGGCTCAATACTTCGTCCAACCCGTAAAAAAAGCCGGAGACGGAGAAGCTAGAGGCTGTGGACGTGTGAAGTTAATCCCAGCTGTGTGCAGGTGTTCCTGGGCTATGTAGCCAGACTTACCCCCGAGCATGCTCCAGACCAACAACTACTCGCTGGTCCTTCTGGTCCAGCTGGGTCTGCTGACCTATGACCTGTTCGTCAACTCCTTCAGCGAGCTGCTCAGGGCAGCGCCCGTCATCCAGCTAGTGCTGTTCATGTAGTATCCAGGATATAGCCGTCCTGTTCAACGTGATCATCATTCTGCTGATGATGTTCAACACGTACGTGTTCCAGGTCGGCCTGGTCGCTCTGCTACTGGAGAGGTTTAAAGGCTTGCTGGTGCTGTCTGCCATCTACCTCACTCTCAGCATCTCCTTTCACTGCTGGGTAGTGAACCTGAGATGGCTGGAATCGAATCGTTTCATCTGGACGAACGGCCTGCGGGTCCTCTTCGTCTTCCAGAGGGTTGCTGCAGTTTTGTATTTCTACGTGTACAAACGGACAGCAGAGTGTCTGGGCGACCCGCGGCTCTATCAGGATTCTGTCTGGCTGAGGGATGCCTTTGCCAGAGCTCGTCAGTGAGAAGGAGGAAATGGAAGGAacaattacacccccccccccaaaatgactTATTACCAGGCGAGGCCTGCCAGGCTCTGTGGTGACTCACTTGCCTGGGTGAGCCATGTTCGTTAGGCATGAAACTGAAACGGGGAGGGACTTCCCTggccttgtccaataagaaatggcCATTATTGTTTTCTCGCTTCAAAGCGGTTTGCCCAACTGAAAATGACTCGGGGTTAGGATGGAGCTGACGGAGAAGTGAGAAACGGCAATGGGTTTGTACAGCAGGATGGATCAAGTCAATGTACCACACTACATGAATATGGACTAATGTTGTAACAAGAAGACAAGACACTAAAGGACAATCTGAGGcagatatttttttaaacagtacatttataatGACAGCTATTAATTTAGTGTTTTTACTAAGATGGAATAAATtagcatcccaaattgcaccctattccctaatatagtgcactaaaTGGCGAATAGAATGCATTTTGGGATGCACGCCTGGTTCTGTGAACAACAGGTTCTGTGAACAACAGTGTATAAGAGTTGTTACTGGTCCCCTCTCAGGTGAGAGAGGGGAAGTCCTGGGGCTCGACTCCATCCAGTCTGTGTTGTAGCATCAAGGTCATTTCCTGGTGAGGGCCACGTTTACCGTGAAGGAAGTCTACGCTATAATGCTGATCTTCTGCACTACACATTGAATGAAGCCTCTGGTTCAGTTTGTCCTGTAGATAAGATGTGCTGTTTACAAAGTTGATGGATATTTGTTTTTCAAAGTTCAAATTTTCAATCAAACACTTTttatatctttttttattttataaaaataaatgttttgttttcttaaCTCGT
>XM_021598591.2
CAGGACGGAGATGGCGTTGCCATGGTATTCGAAGAAAAGCCCGCAAAGCAAACACTGCCTTTGGCTTAAGCTAGCTAATGAACTAGACGACGGTGACGGCTCAATACTTCGTCCAACCCGTAAAAAAAGGTGTTCCTGGGCTATGTAGCCAGACTTACCCCCGAGCATGCTCCAGACCAACAACTACTCGCTGGTCCTTCTGGTCCAGCTGGGTCTGCTGACCTATGACCTGTTCGTCAACTCCTTCAGCGAGCTGCTCAGGGCAGCGCCCGTCATCCAGCTAGTGCTGTTCATTATCCAGGATATAGCCGTCCTGTTCAACGTGATCATCATTCTGCTGATGATGTTCAACACGTACGTGTTCCAGGTCGGCCTGGTCGCTCTGCTACTGGAGAGGTTTAAAGGCTTGCTGGTGCTGTCTGCCATCTACCTCACTCTCAGCATCTCCTTTCACTGCTGGGTAGTGAACCTGAGATGGCTGGAATCGAATCGTTTCATCTGGACGAACGGCCTGCGGGTCCTCTTCGTCTTCCAGAGGGTTGCTGCAGTTTTGTATTTCTACGTGTACAAACGGACAGCAGAGTGTCTGGGCGACCCGCGGCTCTATCAGGATTCTGTCTGGCTGAGGGATGCCTTTGCCAGAGCTCGTCAGTGAGAAGGAGGAAATGGAAGGAacaattacacccccccccccaaaatgactTATTACCAGGCGAGGCCTGCCAGGCTCTGTGGTGACTCACTTGCCTGGGTGAGCCATGTTCGTTAGGCATGAAACTGAAACGGGGAGGGACTTCCCTggccttgtccaataagaaatggcCATTATTGTTTTCTCGCTTCAAAGCGGTTTGCCCAACTGAAAATGACTCGGGGTTAGGATGGAGCTGACGGAGAAGTGAGAAACGGCAATGGGTTTGTACAGCAGGATGGATCAAGTCAATGTACCACACTACATGAATATGGACTAATGTTGTAACAAGAAGACAAGACACTAAAGGACAATCTGAGGcagatatttttttaaacagtacatttataatGACAGCTATTAATTTAGTGTTTTTACTAAGATGGAATAAATtagcatcccaaattgcaccctattccctaatatagtgcactaaaTGGCGAATAGAATGCATTTTGGGATGCACGCCTGGTTCTGTGAACAACAGGTTCTGTGAACAACAGTGTATAAGAGTTGTTACTGGTCCCCTCTCAGGTGAGAGAGGGGAAGTCCTGGGGCTCGACTCCATCCAGTCTGTGTTGTAGCATCAAGGTCATTTCCTGGTGAGGGCCACGTTTACCGTGAAGGAAGTCTACGCTATAATGCTGATCTTCTGCACTACACATTGAATGAAGCCTCTGGTTCAGTTTGTCCTGTAGATAAGATGTGCTGTTTACAAAGTTGATGGATATTTGTTTTTCAAAGTTCAAATTTTCAATCAAACACTTTttatatctttttttattttataaaaataaatgttttgttttcttaaCTCGT
>XM_036968996.1
tTGGTCTGTCTGTAAACGCAGCCGGAGACGGAGAAGCTAGAGGCTGTGGACGTGTGAAGTTAATCCCAGCTGTGTGCAGGTGTTCCTGGGCTATGTAGCCAGACTTACCCCCGAGCATGCTCCAGACCAACAACTACTCGCTGGTCCTTCTGGTCCAGCTGGGTCTGCTGACCTATGACCTGTTCGTCAACTCCTTCAGCGAGCTGCTCAGGGCAGCGCCCGTCATCCAGCTAGTGCTGTTCATTATCCAGGATATAGCCGTCCTGTTCAACGTGATCATCATTCTGCTGATGATGTTCAACACGTACGTGTTCCAGGTCGGCCTGGTCGCTCTGCTACTGGAGAGGTTTAAAGGCTTGCTGGTGCTGTCTGCCATCTACCTCACTCTCAGCATCTCCTTTCACTGCTGGGTAGTGAACCTGAGATGGCTGGAATCGAATCGTTTCATCTGGACGAACGGCCTGCGGGTCCTCTTCGTCTTCCAGAGGGTTGCTGCAGTTTTGTATTTCTACGTGTACAAACGGACAGCAGAGTGTCTGGGCGACCCGCGGCTCTATCAGGATTCTGTCTGGCTGAGGGATGCCTTTGCCAGAGCTCGTCAGTGAGAAGGAGGAAATGGAAGGAacaattacacccccccccccaaaatgactTATTACCAGGCGAGGCCTGCCAGGCTCTGTGGTGACTCACTTGCCTGGGTGAGCCATGTTCGTTAGGCATGAAACTGAAACGGGGAGGGACTTCCCTggccttgtccaataagaaatggcCATTATTGTTTTCTCGCTTCAAAGCGGTTTGCCCAACTGAAAATGACTCGGGGTTAGGATGGAGCTGACGGAGAAGTGAGAAACGGCAATGGGTTTGTACAGCAGGATGGATCAAGTCAATGTACCACACTACATGAATATGGACTAATGTTGTAACAAGAAGACAAGACACTAAAGGACAATCTGAGGcagatatttttttaaacagtacatttataatGACAGCTATTAATTTAGTGTTTTTACTAAGATGGAATAAATtagcatcccaaattgcaccctattccctaatatagtgcactaaaTGGCGAATAGAATGCATTTTGGGATGCACGCCTGGTTCTGTGAACAACAGGTTCTGTGAACAACAGTGTATAAGAGTTGTTACTGGTCCCCTCTCAGGTGAGAGAGGGGAAGTCCTGGGGCTCGACTCCATCCAGTCTGTGTTGTAGCATCAAGGTCATTTCCTGGTGAGGGCCACGTTTACCGTGAAGGAAGTCTACGCTATAATGCTGATCTTCTGCACTACACATTGAATGAAGCCTCTGGTTCAGTTTGTCCTGTAGATAAGATGTGCTGTTTACAAAGTTGATGGATATTTGTTTTTCAAAGTTCAAATTTTCAATCAAACACTTTttatatctttttttattttataaaaataaatgttttgttttcttaaCTCGT
>TU2507856
TTAGATGTTCTTACTGGGATTGTAACTGTGTTTTTATAACCTGCGTGTTCCAGTATCCAGGATATAGCCGTCCTGTTCAACGTGATCATCATTCTGCTGATGATGTTCAACACGTACGTGTTCCAGGTCGGCCTGGTCGCTCTGCTACTGGAGAGGTTTAAAGGCTTGCTGGTGCTGTCTGCCATCTACCTCACTCTCAGCATCTCCTTTCACTGCTGGGTAGTGAACCTGAGATGGCTGGAATCGAATCGTTTCATCTGGACGAACGGCCTGCGGGTCCTCTTCGTCTTCCAGAGGGTTGCTGCAGTTTTGTATTTCTACGTGTACAAACGGACAGCAGAGTGTCTGGGCGACCCGCGGCTCTATCAGGATTCTGTCTGGCTGAGGGATGCCTTTGCCAGAGCTCGTCAGTGAGAAGGAGGAAATGGAAGGAacaattacacccccccccccaaaatgactTATTACCAGGCGAGGCCTGCCAGGCTCTGTGGTGACTCACTTGCCTGGGTGAGCCATGTTCGTTAGGCATGAAACTGAAACGGGGAGGGACTTCCCTggccttgtccaataagaaatggcCATTATTGTTTTCTCGCTTCAAAGCGGTTTGCCCAACTGAAAATGACTCGGGGTTAGGATGGAGCTGACGGAGAAGTGAGAAACGGCAATGGGTTTGTACAGCAGGATGGATCAAGTCAATGTACCACACTACATGAATATGGACTAATGTTGTAACAAGAAGACAAGACACTAAAGGACAATCTGAGGcagatatttttttaaacagtacatttataatGACAGCTATTAATTTAGTGTTTTTACTAAGATGGAATAAATtagcatcccaaattgcaccctattccctaatatagtgcactaaaTGGCGAATAGAATGCATTTTGGGATGCACGCCTGGTTCTGTGAACAACAGGTTCTGTGAACAACAGTGTATAAGAGTTGTTACTGGTCCCCTCTCAGGTGAGAGAGGGGAAGTCCTGGGGCTCGACTCCATCCAGTCTGTGTTGTAGCATCAAGGTCATTTCCTGGTGAGGGCCACGTTTACCGTGAAGGAAGTCTACGCTATAATGCTGATCTTCTGCACTACACATTGAATGAAGCCTCTGGTTCAGTTTGTCCTGTAGATAAGATGTGCTGTTTACAAAGTTGATGGATATTTGTTTTTCAAAGTTCAAATTTTCAATCAAAC

Function

NR:

description
transmembrane protein 138-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598587.2 False 2019 mRNA 0.47 6 3931206 3937155
XM_021598589.2 False 1581 mRNA 0.47 5 3931218 3937155
XM_021598592.2 False 1585 mRNA 0.47 5 3931218 3937155
XM_021598591.2 False 1510 mRNA 0.47 5 3931231 3937155
XM_036968996.1 False 1460 mRNA 0.47 4 3934698 3937155
TU2507856 True 1213 TUCP 0.46 3 3935027 3937099

Neighbor

gene id symbol gene type direction distance location
LOC118945778 NA coding upstream 34429 3895152 ~ 3896777 (+)
LOC110521164 LOC106584811 coding upstream 99907 3827634 ~ 3831299 (+)
LOC118945791 LOC106584811 coding upstream 112430 3813375 ~ 3818776 (+)
LOC110521165 fintrim coding upstream 134807 3784498 ~ 3796399 (+)
ddb2 ddb2 coding upstream 204606 3688608 ~ 3726600 (+)
LOC110520937 tmem80 coding downstream 21078 3958233 ~ 4072671 (+)
LOC110521167 eps8l2 coding downstream 142884 4080039 ~ 4175391 (+)
LOC110521168 fadsd5 coding downstream 276430 4213585 ~ 4227030 (+)
LOC110521171 NA coding downstream 302895 4175714 ~ 4243996 (+)
LOC110521166 LOC106584798 coding downstream 366009 4303164 ~ 4305234 (+)
G2192434 NA non-coding upstream 10351 3920408 ~ 3920855 (+)
G2192432 NA non-coding upstream 11936 3919058 ~ 3919270 (+)
G2192429 NA non-coding upstream 12908 3916789 ~ 3918298 (+)
G2192428 NA non-coding upstream 14645 3916056 ~ 3916561 (+)
G2192427 NA non-coding upstream 15398 3915584 ~ 3915808 (+)
G2192443 NA non-coding downstream 1851 3939006 ~ 3940611 (+)
G2192444 NA non-coding downstream 4577 3941732 ~ 3949435 (+)
G2192449 NA non-coding downstream 18718 3955873 ~ 3956200 (+)
G2192452 NA non-coding downstream 26033 3963188 ~ 3966740 (+)
G2192470 NA non-coding downstream 67909 4005064 ~ 4005330 (+)
G2192425 LOC106584810 other upstream 20840 3910104 ~ 3910366 (+)
iqch LOC106584827 other upstream 878754 2941093 ~ 3052608 (+)
G2192059 NA other upstream 1006741 2922901 ~ 2924465 (+)
smad3b LOC107755098 other upstream 1022024 2892934 ~ 2915974 (+)
LOC118945757 LOC106584793 other downstream 629596 4566366 ~ 4698448 (+)
G2193497 NA other downstream 840545 4777700 ~ 4779264 (+)
LOC110521176 LOC106584785 other downstream 1056247 4970661 ~ 4994824 (+)
G2193611 LOC106584794 other downstream 1168903 5106058 ~ 5108156 (+)
G2193620 NA other downstream 1186358 5123513 ~ 5124709 (+)

Expression


Co-expression Network