LOC110520937 (tmem80)


Basic Information

Item Value
gene id LOC110520937
gene name tmem80
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 3958233 ~ 4072671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968530.1
GTCAACACGTACAGGACGGACATGGAGATGACACTGAAGGTCATGACGACGACGAGAGCCAGAATGATTCCCTGCATCACCCTGTGgctgatacagccctgctctggggtcAGACTCTGGAACCAAACAGAGCTACAGGGACACTTCCTGTCCTGCTGAACTGGCTTCCTGATTGGCTAGAGAGACGTGCACTAGATGGAGACATGTAACCGCTGGTTATTTAGACAACACtggtgaagaaggagcagcaACGTTCAACATGGCGGCGAACAGAGCAGGCAAGTCTGCTGTTGTACTGTCGTCTGTTCCTCTCCAGCTCCTGCTCTACCTGACAGCTCTTTACTATGTCTTCTACTTCCTCTCTACATTCTGCATGATCATCTACAAGAGTCGTGTGATGAGCTACCCTGATGACCTCCTAACCCAGGACGTAGGTCTGCTCTTCTTCATGGCTTGTCTTGAGCTGTTCCGACTCTACTGTGGTGTGAGGGGTAACCTGCAGGAGACGGAGGGTTATATGTGGGCTAACCTGGCCATGACGGTGGCTACGGCCCTGTTGTCCGTCTACTTCCTGGTATGGCAGCTGTACGTGATGCATGCTGACGTCATCATCAACGCCATACTGCTCAGTGTTTACGGACTGGGAGGGGTCCTAGGTCTGGCCACACTGGCTAGATTCACCAGTGTCTACTCCTGACCCCATCAATTATAGCTGCACTGACAGCACCTCCAGAATCTCCTTCGACTCCTTCACTACCACTCCTTCACTACCACTCCTTCACTACCACTCCTTCACTACCACTCCTTCACTACCAAACCTTCACTACCACTCCT

Function

symbol description
tmem80 Predicted to be involved in non-motile cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in ciliary transition zone.

NR:

description
transmembrane protein 80

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968530.1 True 834 mRNA 0.52 8 3958233 4072671

Neighbor

gene id symbol gene type direction distance location
LOC110521161 LOC106584807 coding upstream 21078 3931206 ~ 3937155 (+)
LOC118945778 NA coding upstream 61456 3895152 ~ 3896777 (+)
LOC110521164 LOC106584811 coding upstream 126934 3827634 ~ 3831299 (+)
LOC118945791 LOC106584811 coding upstream 139457 3813375 ~ 3818776 (+)
LOC110521165 fintrim coding upstream 161834 3784498 ~ 3796399 (+)
LOC110521167 eps8l2 coding downstream 7368 4080039 ~ 4175391 (+)
LOC110521168 fadsd5 coding downstream 140914 4213585 ~ 4227030 (+)
LOC110521171 NA coding downstream 167379 4175714 ~ 4243996 (+)
LOC110521166 LOC106584798 coding downstream 230493 4303164 ~ 4305234 (+)
LOC118945758 LOC103466506 coding downstream 305622 4378293 ~ 4532627 (+)
G2192449 NA non-coding upstream 2033 3955873 ~ 3956200 (+)
G2192444 NA non-coding upstream 8798 3941732 ~ 3949435 (+)
G2192443 NA non-coding upstream 17622 3939006 ~ 3940611 (+)
G2192434 NA non-coding upstream 37378 3920408 ~ 3920855 (+)
G2192432 NA non-coding upstream 38963 3919058 ~ 3919270 (+)
G2192451 NA non-coding downstream 626 4073297 ~ 4077116 (+)
G2192515 NA non-coding downstream 5961 4078632 ~ 4078905 (+)
G2192518 NA non-coding downstream 9180 4081851 ~ 4082289 (+)
G2192534 NA non-coding downstream 63034 4135705 ~ 4137126 (+)
G2192425 LOC106584810 other upstream 47867 3910104 ~ 3910366 (+)
iqch LOC106584827 other upstream 905781 2941093 ~ 3052608 (+)
G2192059 NA other upstream 1033768 2922901 ~ 2924465 (+)
LOC118945757 LOC106584793 other downstream 494080 4566366 ~ 4698448 (+)
G2193497 NA other downstream 705029 4777700 ~ 4779264 (+)
LOC110521176 LOC106584785 other downstream 920731 4970661 ~ 4994824 (+)
G2193611 LOC106584794 other downstream 1033387 5106058 ~ 5108156 (+)
G2193620 NA other downstream 1050842 5123513 ~ 5124709 (+)

Expression


Co-expression Network