LOC110521171


Basic Information

Item Value
gene id LOC110521171
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 4175714 ~ 4243996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473084.2
ATTAAATCCCGTCCAGAGTCAGGAAGGGATTTATTTATGGAGATACGCATCCAGCCACAGATCTCCTGACTTCTTCAGAGACCTGGAGAAGAACAGAGGTGGATAAAGAACCAGACTCCAGGTACGCAGAGAGAGGGGCGGATGAActtccaacagagatcacgacgacacactgagcGATGACTGCAAAGCAACAATTATCACAGTGATAAGGAAGATAgttcacccgatgtcacaggaagtccataaagatcaaggacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtaca
>TU2507954
GTTCATCTTTAATACACATGAGTAGCTGCAAGGTCGGTCCCGCTCTGGTCGCAGTCAGGGAAGGAGCTCCAAGAGTAAATGGCTATATGTCCCTTATATAATGGGAGGTGATCAAACAATCAAATTGTTTACACCACAGTTATTTTATACAAAGCAACGGTCCCAAACACAGAACAGAGCATTAAGCCTTGAGAAGATCCAACGGCTCACCTCTGCCACCACAGTAACTGTACGATCACTACAATGTTTTGCCGTTGTAATAAATATAAGACGTAGCCAAAGAATAATACGAAAGTAGATTATCATTCACTATTAACCTGTTTCTTTTTGTCTGGGGAAACCGACAAAACAGTTTTATTCTGGTCTGATCTTACAGAAGAGAAATCCATTAGCTTCTCCATTAGCTTCTCCATCTATTAGCTTCTCTATTAGCTTCTCCATTAGCTTCTCCATCTATTAGCTTGTCCATTAGCTTCTCCATCTATTAGCTTCCCTATTAGCTTCTCCATCTATTAGCTTCTCCATTACCTTCTACATTACCTTCTCCATTCGCTTCTCCATTATCTTCTCCATTAGCTTTTCCATCTATTAGCTTCCCTATTAGCTTCTCCATCTATTAGCTTCCCTATTACCTTCTCCATTACCTTCTACATTAGCTTCTCCATTACCTTCGCCATTAGCTTCTCCATCTATTAGCTTCTCTATTAGCTTCTCCGTTAGCTTCTGCTTCCATAAACAGGTCCAGACAGAGCGGGCAcaatggggtggggggtgggggggggggtatattacTGCCAAAATGTTGTAACCGCAGCAACCGATCTCCATAGAGCTCCCCTTAGTGTACAGATGTAATCTAACAACCACACTTTACAGAGCAATAGCTCAGCCACATAGTCTAGGATCGTTTTCAATAGGGCAGattgtagcaaaacgttttgcaacggacaACAGAAAATTCTATATTCCTATTGGACAATTTCAGGTTATACCTCCTTGTTTCAAAAACGTTTTCTCTCAACTGAACACGACCCTGAACTCGGTGAAGGCAACTCACATTCACAGCACAGTGAGTGTCCTGCCGTTGACTGACGTGATAGTCTTGTACTCAAATAAtacaacaacatttttaaaaaaaggaCAATGCAAATCTTTACAGTGTATAAGATAAATGTTTGAAATCTCAGTTAACACTATACTATGGTAGAAAATACCGCACAGCAATGTAAACCACACAGTGATATCACCACCACACAGACAGGCCACTCAGATATAATAAGAATATTTGTATTAATTAAGATCCCCGTGaatagctactcttcctggggtccaaacaagtTTAAAACAGCGACATCACAACAACATTATCAAATAACACAATATtttattacactattactctacTATGTAGTATACTATATGGTACCTGTACATTAGAGTACTCTGTTTGGTAGGCAGTATTAAGAtggcgggggggggggtaggtttcACACCAGACATCAAGTTTGACATGCAGACTTGTGCACTGTGATTTGACTTTTTAAAAAGAGGTGATTTACGCTTGAGCTAACATCCACGATGTTTGCAGCGATCATTATCAACACAAACGTCTGGGGAAACTATCTCTGTTCGCAGGTGGTTAATCTGCGATGGATTAAATCCCGTCCAGAGTCAGGAAGGGATTTATTTATGGAGATACGCATCCAGCCACAGATCTCCTGACTTCTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473084.2 False 321 mRNA 0.49 3 4240050 4243996
TU2507954 True 1731 lncRNA 0.41 2 4175714 4240127

Neighbor

gene id symbol gene type direction distance location
LOC110521168 fadsd5 coding upstream 13020 4213585 ~ 4227030 (+)
LOC110521167 eps8l2 coding upstream 64659 4080039 ~ 4175391 (+)
LOC110520937 tmem80 coding upstream 167379 3958233 ~ 4072671 (+)
LOC110521161 LOC106584807 coding upstream 302895 3931206 ~ 3937155 (+)
LOC118945778 NA coding upstream 343273 3895152 ~ 3896777 (+)
LOC110521166 LOC106584798 coding downstream 59168 4303164 ~ 4305234 (+)
LOC118945758 LOC103466506 coding downstream 134297 4378293 ~ 4532627 (+)
LOC118945757 LOC106584793 coding downstream 322370 4566366 ~ 4698448 (+)
LOC118945759 NA coding downstream 326177 4570173 ~ 4570963 (+)
LOC118945760 NA coding downstream 460106 4704102 ~ 4713241 (+)
G2192565 NA non-coding upstream 20900 4218467 ~ 4219150 (+)
G2192534 NA non-coding upstream 102924 4135705 ~ 4137126 (+)
G2192518 NA non-coding upstream 157761 4081851 ~ 4082289 (+)
G2192515 NA non-coding upstream 161145 4078632 ~ 4078905 (+)
G2192451 NA non-coding upstream 162934 4073297 ~ 4077116 (+)
G2192568 NA non-coding downstream 20035 4264031 ~ 4264261 (+)
G2192571 NA non-coding downstream 28253 4272249 ~ 4278710 (+)
G2192576 NA non-coding downstream 41646 4285642 ~ 4287681 (+)
G2192589 NA non-coding downstream 66798 4310794 ~ 4311592 (+)
G2192599 NA non-coding downstream 83543 4327539 ~ 4328035 (+)
G2192425 LOC106584810 other upstream 329684 3910104 ~ 3910366 (+)
LOC110521165 fintrim other upstream 454342 3784498 ~ 3796399 (+)
iqch LOC106584827 other upstream 1187598 2941093 ~ 3052608 (+)
G2192059 NA other upstream 1315585 2922901 ~ 2924465 (+)
G2193497 NA other downstream 533704 4777700 ~ 4779264 (+)
LOC110521176 LOC106584785 other downstream 749406 4970661 ~ 4994824 (+)
G2193611 LOC106584794 other downstream 862062 5106058 ~ 5108156 (+)
G2193620 NA other downstream 879517 5123513 ~ 5124709 (+)
LOC110521164 LOC106584811 coding upstream 344415 3827634 ~ 3831299 (+)
G2192510 NA non-coding upstream 113546 4061798 ~ 4062168 (+)

Expression


Co-expression Network