LOC110521166 (LOC106584798)


Basic Information

Item Value
gene id LOC110521166
gene name LOC106584798
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 4303164 ~ 4305234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598599.2
tcagccccagcctcagcctcagccccagcctcagccccagcctcagccacaGACAGTTTTggagccccagtctcagccccaacCCCATTTTAAGACGAGGCTTCAGCCTCATCCCCTGATTCCATCCTGACTCAGCCAGTATCCAACGGCAGGCTGTCGGGCCACGGGCGTAGCAACGGGCACGGCATGGGCAACTCCTCCAGgaaggaggaggacgaggaagagAAGGGGAAAGGGAAGGATAAGGATGCTGAGAAGGCGAAagtaatggaggaggagaagaggaggaggaggaagaagaagatgaaggagGAGATGGAAGACGACGAGCTGCCCCTAGGGGTGGAGGAGATGCTGGCGAGCGGAGATCCCGTCTTGGATCTGAGCTATAAAAAGTTCCGCAGGTTGCCCGGTGTGGTCTGTGGGCTACGTCACCTGGAGAAGCTGTATGTGTGTCGTAACAGTCTGCGGACCCTCCCGGAGAACATCGTCCAACTGAAGGGCCTCCGCATCCTGGCTCTAGACTTCAACAAGATGGAGAACGTCCCGTTGGCCATCTGTCAGCTGCGTAACCTGACACGTCTCTACCTGGGCTCTAACCGCCTGATGTCTCTCCCTCCAGAACTACGTAACCTTCAGAGTCTTCGCTGCCTCTGGATGGAGAGCAACTATTTCACACGCTTCCCCCGACAGCTCTACGACTTACCCCACCTCAGGTCCCTCCAGATGGGGGACAACAGGCTGCGGACTCTGCCCCCGGACCTGTGGCGTATGGATGCTCTGCGAGGGCTGTGGCTCTACGGAAACCGTTTCACCGAGTTCCCCCGTGTCTTACTCCGCATGGTGGATCTGGAGATCTTAGACCTGGACAAGAACAAGATCGAGGTGTTCCCTAATCTGAGCCGGCTCCCCGCCCTCCGCCTCTTCTCCTACGACCACAACCCAGTGGAGGGGCCTCCCGGCGTGGGGGAGGAGGTGCTGCTGGTGGGAGAGGGGGCCCAGGAGGAGCTGCAGGACCGAGTGGACAGGAAGGCTAAGAAGGAGCAGGAGGCGAGGGACGCGGAGGAGGCTGCGCTGGCCGGGGATGGGCCTGTGATCCAGGGCATTCTAAAGACGGCCAAACAGAACAGTGCGTCGCACGCAGGGCACAAGCATGACGAGGCCATGCCCCTAaccgaggaggagaggaggaagaaggagatgGAGGCAGAGTTAGAGAAGGCGTTGAACGACTACGGGGCGGGGCTTGAATACGACTTGGAGGGGATAGAATACGAGAAGGAGTTTATATGTGAGGGGGAGGGGTATGATGGCGGGGAGTTGGAGTACGGACGAGGAGATATAGACTATGAGTATGATGAGGGGGAGGAGCTAGAGGAACCAGGAAGACAAGTGGGCCGGTATTGATGACTGACTAACTTCTCCCCCTCCTAAGCCTCTGACTCCTCCTCTCCTAAGCCTCTGACTCCTCCCCTCCTATGTCTAGACTTGTTTGAAATTGCAGCAGACATTGCAGGTGACGGACTGAtcttacaagtcaccttgcaaaATAAATCACTACTTAgaattatttgtagatcagtcagtcagtcacaatttacccgcAATCCATCACAGATGTGACGCTCTCGGACACAGCCTctgactactgcaacactctCAGGGCTATAGGAGGtgatgtgaagaaaaaaaaacacccaGGAATTATCTAGCAAGGTTATCAAAATAGTTTTCGTCTGCCTTTCTTAGCTCCAGCTGTCATAACAATGCCCAACTATAGGGTTGTTGAACTTTTAGTAAATCTTGTGTGAAATGAATTAATGACTAGCCTCCTGAACCTGTGGCTGTAATATGtgactttctctttctctctgtagttAGCATTAGGACAGGGCTGACACTAAATGACTAAACTCATTAGATGTTTTTCTAACTGACCTGTGAAAATATATTAATGCACTGCACATTGTGGGAATGAAGGCTGGATGGATGATGGCTGGCTGGAAGGCTGGCTGGATTGATGGATGATGGGTTTATgaatgatggatggatgaatgaatgaatgaatgat

Function

NR:

description
leucine-rich repeat-containing protein 10B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598599.2 True 2071 mRNA 0.54 1 4303164 4305234

Neighbor

gene id symbol gene type direction distance location
LOC110521171 NA coding upstream 59168 4175714 ~ 4243996 (+)
LOC110521168 fadsd5 coding upstream 76134 4213585 ~ 4227030 (+)
LOC110521167 eps8l2 coding upstream 127773 4080039 ~ 4175391 (+)
LOC110520937 tmem80 coding upstream 230493 3958233 ~ 4072671 (+)
LOC110521161 LOC106584807 coding upstream 366009 3931206 ~ 3937155 (+)
LOC118945758 LOC103466506 coding downstream 73059 4378293 ~ 4532627 (+)
LOC118945757 LOC106584793 coding downstream 261132 4566366 ~ 4698448 (+)
LOC118945759 NA coding downstream 264939 4570173 ~ 4570963 (+)
LOC118945760 NA coding downstream 398868 4704102 ~ 4713241 (+)
LOC110522695 LOC106590753 coding downstream 542922 4848156 ~ 4869652 (+)
G2192576 NA non-coding upstream 15483 4285642 ~ 4287681 (+)
G2192571 NA non-coding upstream 24454 4272249 ~ 4278710 (+)
G2192568 NA non-coding upstream 38903 4264031 ~ 4264261 (+)
G2192491 NA non-coding upstream 40926 4192548 ~ 4262238 (+)
G2192497 NA non-coding upstream 60115 4179844 ~ 4243049 (+)
G2192589 NA non-coding downstream 5560 4310794 ~ 4311592 (+)
G2192599 NA non-coding downstream 22305 4327539 ~ 4328035 (+)
G2192607 NA non-coding downstream 38904 4344138 ~ 4344394 (+)
G2192619 NA non-coding downstream 74916 4380150 ~ 4407036 (+)
G2192625 NA non-coding downstream 81074 4386308 ~ 4386754 (+)
G2192425 LOC106584810 other upstream 392798 3910104 ~ 3910366 (+)
LOC110521165 fintrim other upstream 517456 3784498 ~ 3796399 (+)
iqch LOC106584827 other upstream 1250712 2941093 ~ 3052608 (+)
G2192059 NA other upstream 1378699 2922901 ~ 2924465 (+)
G2193497 NA other downstream 472466 4777700 ~ 4779264 (+)
LOC110521176 LOC106584785 other downstream 688168 4970661 ~ 4994824 (+)
G2193611 LOC106584794 other downstream 800824 5106058 ~ 5108156 (+)
G2193620 NA other downstream 818279 5123513 ~ 5124709 (+)

Expression


Co-expression Network