LOC118945757 (LOC106584793)


Basic Information

Item Value
gene id LOC118945757
gene name LOC106584793
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 4566366 ~ 4698448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968511.1
CTTCTGTCTCTACCTGATCTACCTGATCTACCtacctctgtctcttctgtctctaccTGATCTACCTACCTCTGTCTCTTGTCTCTGCTCTCCTGTGACCTGGATAACTTATGCCTTCCCATTTAACACACCTCGCACAACTAATCAACTTTGCTTCCTTTACAATGTTGTTGCTtgatctctctacctctccttgtcctcttcctcttctcttcttcttgttcctgtctttttccacctcctcccgtctctctttgtctctgctgtgttgtctcctctctctctctccttcctagtGGGGAAGTGTCAGGGGGGCAGACAGGGGCATCGGTAGCGTTGGGGgggggaggggatggggagggtCCGGCGGGTCCCAGTGACAGTGTGAAGATGATGCCTGGCGGTACCAGCATGGCGATGTCGGGGGTCAAGGCCGGGAGGTGGCAGGCGGTCCAGAGCCACATGCAGGCGGGAGGACTCAGACCCACCAACTTTGGAGACTCAGTAGGTGCTCTGTCCTCTGCCTCCACCCTGGATCCCCTCCCCTCAGCTGGGCCGCTGGCCCGGCCACGCACCCTGCTACGTCAGCAGAGTCTCCAGCAGCCATTCATCCACCCACCTGCCCCAAGCCTCACCCAGCTCCCACCCACCTCCTCACAGAGCCTGGGAGAGCTATACCAGGTAACCCCGCCGGGGCACGGCCATCCTGGGGGAGGCGGGGGCAGTGAAGGAGGTGGGATAGGAGGTGGGGTAGGAGGTGGGGGCACTCGAGGAGGTCCCAGGAGGGTGCGAGGGAGCCCTGCAGGGGCAGGCACTTCACaatacagaggaggaggaggaggaggaggaggaggaggaggaagaggaggaggaggaaatccTGGCTCCTGGGATCACATGATGGGCCAGTTGAAAAACAGAGGCCTGGATGCCAAGTCCTTCCTCGAAGGGAAGATGGTGGTTCTTTCTTTGGCTATTGGTTTGGCAGAGCAAGATGACTTTGCCAATATCCCTGATCCAATCACCTCCATGCAGGAAGCTCCAACAGCCAATCAGGAAGCACTTCCTCCTCCAGACAAGAGgggcGTGTCCAACAAGCCAGGCAACAGTCCCAAGGGCCACCCCCCCGACGGACACTCCTCAGTCACCGATCTGGCCAACTCTCTCACCGGAGACATGGTCATGCTGTCCCCGGGCTCTGAGGATGACGACGGTGAAGGTCCTATCTGTGAGAAGCTGGGGCGGATCCAGTTCTCGGTTGGCTACAGCTTCCAGGACTCCACCCTGACCGTCAAGATTCTCAAGGGCCAGGAGCTCCCTGCCAAGGACTTCTCTGGGACCTCTGACCCCTTCGTCAAGCTCTACCTGCTGCCGGACAAGAAGCACAAGCTGGAGACCAAGGTGAAGAGGAAGAACCTCAACCCTCACTGGAACGAGACCTTCCTGTTCGAGGGTTTCCCGTATgagaaggtgagggagaggaCTCTGTACCTCCAGGTGTTGGACTTTGACCGATTCAGTCGTAACGACCCCATCGGGGAGGTATCCATCCCTCTCAACAAGCTCAGTGACCTGGGACACATGCAGACCTTCTGGAAGGAGCTCAAACCCTGCATGGACGGAGCGGGGAGGCGAGGGGACTTGCTGGTGTCTCTGTGCTATAACCCAACAGCCAACACCATCACTGTGAACATCATCAAAGCACGCAATCTCAAAGCCATGGACATAGGAGGAACATCAGaCCCCTATGTGAAGCTGTGGCTGATGCACAAGGACAAGCGTATTGAGAAGAAGAAGACAGTGACCATAAAGTGTTGTCTCAACCCCGTCTTCAATGAGTCTTTCCCCTTCGAGGTTCCGGCCCACGTCCTCCGGgagaccaccatcatcatcaccgtcATGGACAAGGACCGGCTCAGCCGCAATGACGTCATTGGCAAGatctaCCTATCTTGGAAGAGTGGTCCAGCGGAGGTGAAACACTGGAAGGACATGATGGGCCGGCCGCGTACTAATGTGGCCCAATGGCACGCTCTCAAGGCCTGATCGTCCCGCCTACCCCCTCTCCAGTGACCCCGC
>TU2508095
TGAAGATGATGCCTGGCGGTACCAGCATGGCGATGTCGGGGGTCAAGGCCGGGAGGTGGCAGGCGGTCCAGAGCCACATGCAGGCGGGAGGACTCAGACCCACCAACTTTGGAGACTCAGTAGGTGCTCTGTCCTCTGCCTCCACCCTGGATCCCCTCCCCTCAGCTGGGCCGCTGGCCCGGCCACGCACCCTGCTACGTCAGCAGAGTCTCCAGCAGCCATTCATCCACCCACCTGCCCCAAGCCTCACCCAGCTCCCACCCACCTCCTCACAGAGCCTGGGAGAGCTATACCAGGTAACCCCGCCGGGGCACGGCCATC

Function

NR:

description
PREDICTED: translation initiation factor IF-2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968511.1 False 2079 mRNA 0.57 10 4566366 4698448
TU2508095 True 321 TUCP 0.66 2 4566751 4576024

Neighbor

gene id symbol gene type direction distance location
LOC118945758 LOC103466506 coding upstream 33739 4378293 ~ 4532627 (+)
LOC110521166 LOC106584798 coding upstream 261132 4303164 ~ 4305234 (+)
LOC110521171 NA coding upstream 322370 4175714 ~ 4243996 (+)
LOC110521168 fadsd5 coding upstream 339336 4213585 ~ 4227030 (+)
LOC110521167 eps8l2 coding upstream 390975 4080039 ~ 4175391 (+)
LOC118945760 NA coding downstream 5654 4704102 ~ 4713241 (+)
LOC110522695 LOC106590753 coding downstream 149708 4848156 ~ 4869652 (+)
LOC110521175 NA coding downstream 188170 4886618 ~ 4950815 (+)
LOC110521176 LOC106584785 coding downstream 272213 4970661 ~ 4994824 (+)
rab3il1 LOC106584776 coding downstream 307182 5005630 ~ 5033497 (+)
G2192695 NA non-coding upstream 31557 4534312 ~ 4534809 (+)
G2192690 NA non-coding upstream 46415 4519051 ~ 4519951 (+)
G2192639 NA non-coding upstream 154018 4410569 ~ 4412348 (+)
G2192619 NA non-coding upstream 159330 4380150 ~ 4407036 (+)
G2192625 NA non-coding upstream 179612 4386308 ~ 4386754 (+)
G2193458 NA non-coding downstream 17945 4716393 ~ 4718897 (+)
G2193461 NA non-coding downstream 22378 4720826 ~ 4721054 (+)
G2193462 NA non-coding downstream 23458 4721906 ~ 4722116 (+)
G2193471 NA non-coding downstream 33723 4732171 ~ 4732860 (+)
LOC110521161 LOC106584807 other upstream 629267 3931206 ~ 3937155 (+)
G2192425 LOC106584810 other upstream 656000 3910104 ~ 3910366 (+)
LOC110521165 fintrim other upstream 780658 3784498 ~ 3796399 (+)
iqch LOC106584827 other upstream 1513914 2941093 ~ 3052608 (+)
G2192059 NA other upstream 1641901 2922901 ~ 2924465 (+)
G2193497 NA other downstream 79252 4777700 ~ 4779264 (+)
G2193611 LOC106584794 other downstream 407610 5106058 ~ 5108156 (+)
G2193620 NA other downstream 425065 5123513 ~ 5124709 (+)
G2193655 NA other downstream 500078 5198526 ~ 5200369 (+)
G2192718 NA non-coding downstream 12256 4588280 ~ 4588734 (+)
G2192713 NA non-coding downstream 25408 4601432 ~ 4606813 (+)
G2192743 NA non-coding downstream 43046 4619070 ~ 4619650 (+)
G2192744 NA non-coding downstream 44229 4620253 ~ 4620562 (+)
G2192756 NA non-coding downstream 85636 4661660 ~ 4662818 (+)

Expression


Co-expression Network