XLOC_004079 (cishb)


Basic Information

Item Value
gene id XLOC_004079
gene name cishb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17959507 ~ 17964525 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007778
AAACGTGCGACCGAGGCGTTTCTCAGCGCTTTTATTTCAGGAAAATAATAACACACCAAGCCAAACGACCTATTGCTCTCGTTAGACTACTACAGCTGCGAagcttttttgtgttgttttgcgtCAGAGTTTGGCCCTCGCGACTCCCTCGAGAATATCCGACTCTTTCAGTTTTTAGGGATTGTTCTTGTTTCCAatatacactgttgaagtctTCACGATTTGTGGACGGGTTTGTCCTCATTATAGTCTTGCTGGAACAATCATGTCAGCAGTTTTGGCTCACGACAGGACTTGTATTCGCGTTGATTTTACAGTGTGTCAAATTTCTAACTGTCACCTCACATTCTGCTGTCCATTGGTGACGTACAGGAGGTGACGATTTTAATGCCCACAAAGAGGAACCAGTCAGGAATGGTTACAAGGGGTACAGGTTCTCAAAATGAGAGGGGTGAATCTGAAGTTCAACAAACCCAGCAGCACCAAGCAGCTCCATACTCTGAGGACTTTCACTTCATCACCACCACCTTCCAGCACCTGAACACCTCAGGATGGTACTGGGGTGGTTTGACAGCTGGCGATGCGAGGGCTGCCCTAATCGGAGCACCTGAAGGTACTTTCCTCGTGCGGGACAGCAGTCATCCGCTTTACCTCTTTACCCTCTCTGTACAGACCTGGAGAGGCCCTACTAACATCCGCATAGAGTACGACAGCGGCCGATTCCGTCTGGATTCCAGTTTTCCAGCTCGGTCCTGCCTGCTGTCCTTTTCTGCTCTTCCTAGTCTCGTGCACCACTATTCATCCGCACGTCCCGAAGAGGAGAAAAAAGCAGAGGACCACCATCATATGGTGGCAAAGGACACTGGGATACTACTGAAGCTCAGAAAGCCTCTTCACAGGCCTCAAGCCTTTCCCACATTACAGCACCTCACTCGACTCACTATAAACAGACACACTGACTGCCATACAAAACTGCCTCTGCCACGACCACTGCTGCTTTACTTGCAGGAGTATCCCTTTCAGGTGTGAAGATACTCACTAAGAGGACATTTTGAGCAATTTGAgggttatttttgtatttttttgaaagatttactTACCATCAAGTTGCAAAAATTGCAGCAGGATTATGAGTCTTACTATTGCCATAAGATAAGATGTATTCCTGATTGCATTTGCACAAATAAACAAGGACTAATTTATGcagattcaaaaaaaaaaaaaaaaaatgtttgtacatatttttgtttttttacctttttttgtcAAGCAGAGGGTTTCTTTCTGTGCTTCGTGGAGCTCTGCATACACAATActataacactgaaaaaaataaataaa

Function

symbol description
cishb Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Human ortholog(s) of this gene implicated in malaria and tuberculosis. Orthologous to human CISH (cytokine inducible SH2 containing protein).

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0046935 1-phosphatidylinositol-3-kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-120 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Human ortholog(s) of this gene implicated in malaria and tuberculosis. Orthologous to human CISH (cytokine inducible SH2 containing protein).

Ensembl:

ensembl_id ENSDARG00000016773

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007778 True 1341 mRNA 0.44 3 17959507 17964525

Neighbor

gene id symbol gene type direction distance location
XLOC_004078 CR589944.2 coding downstream 50825 17906902 ~ 17908682 (-)
XLOC_004077 uba3 coding downstream 156370 17785182 ~ 17803137 (-)
XLOC_004076 tmf1 coding downstream 176577 17757342 ~ 17782930 (-)
XLOC_004075 eogt coding downstream 204063 17726649 ~ 17755444 (-)
XLOC_004074 tafa4b coding downstream 245520 17596979 ~ 17713987 (-)
XLOC_004080 twf2b coding upstream 573 17965098 ~ 17981427 (-)
XLOC_004081 qrich1 coding upstream 32878 17997403 ~ 18107447 (-)
XLOC_004082 LO018315.7 coding upstream 179760 18144285 ~ 18148488 (-)
XLOC_004083 mustn1b coding upstream 285284 18249809 ~ 18253111 (-)
XLOC_004084 stimate coding upstream 305788 18270313 ~ 18283886 (-)
XLOC_004063 CR854846.1 misc downstream 1831829 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 5267816 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 5337740 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 5368211 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 5446245 12512966 ~ 12513262 (-)
XLOC_004073 NA non-coding downstream 729654 17223850 ~ 17229853 (-)
XLOC_004072 CR769769.3 non-coding downstream 812046 17144309 ~ 17147461 (-)
XLOC_004071 CR769769.2 non-coding downstream 861574 17093753 ~ 17097933 (-)
XLOC_004070 NA non-coding downstream 868312 17081422 ~ 17091195 (-)
XLOC_004092 NA non-coding upstream 885401 18849926 ~ 18852369 (-)
XLOC_004093 NA non-coding upstream 1123889 19088414 ~ 19091101 (-)
XLOC_004095 CT737428.1 non-coding upstream 1215927 19180452 ~ 19180555 (-)
XLOC_004096 BX511159.1 non-coding upstream 1451653 19416178 ~ 19416315 (-)

Expression


Co-expression Network