LOC110521176 (LOC106584785)


Basic Information

Item Value
gene id LOC110521176
gene name LOC106584785
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 4970661 ~ 4994824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969189.1
TAGTCCCCAATTGGCTCAGACTGTTTAGAACAATTTAAACGGGTTTCAGCGGGTGTTGAAATCAAATTGGAGGAAAGACTGACTATTATGTTGCGCAGAGAATGATAATGGTGGATTATACGACGAATACTTTTATGAACATTATCGAAATCATCTGCAGTGTAGAGTGAACTGCTATCTCAGCGAAACGGATTGTATTTTGTCGAACCCGGAAGAGTGTTATGACAGCGACTATGAGCTCTGTACTGTCCTCAACACGCACCCTGCTGCAGATGTTCGATGTGAAAATACAAGCGTTTGCCAATGAAATTGAAAATGACCACATGGTGTGGCTGTTTGAGATCCAGCACGAAGCCAACCGCATATTCTCAAGTGACTTTAGTGCAGAACTGGAATTGATGCCAAAGACTCCATCACAGAAGAAGCGCAACCGTAGGAAACGTCTATCTGTGGGTCAGAATGAAAATCGCAACAAGAGACGCTTCTCCAAGGGAAAGCGCAGCGACCTGCGTCGCTCCTCCGTGTCCACCTCCCTGAACCTGATAGCAGAGGATGAAGGAGGGTCCCCAGTCACAAGGGAAGAGCTGGTCAAACCCTCACGCGCTCGCAGAACCAAACAGACCACCCAGCCTGAGGTGGCATCACCTGTACGCAGCACCCACAAAGGAGCTGCTCAGACCTCCTCCTTCCAGCTGGAGGAGGCACAGCAGCAGGTGTCTCGCTCCATCAGCCAGATCCTGGAGGAGGAGGCTGAGAGTAAGAGGGGGGAGTCCAGCTCAGACTCCTTCCAGCCCCCATGTTTCACACCCCGTCGCCCCCCTCTGACCCAAAGCCACATAACTAAAGCCGTAGTTAAGATCTCAGCCTCCGAGCGGCAGTCTGCAGAGCTCCAGATGAACCCCAACGCAGAGCGCTCTCCAGGCCGCGCCGCCATTAAGATAGTCATTGCTGCTGCCACGCACTTCGGCCCCAGACGGAGCTCTGTGCGGCTCTCCCTGGCAGGGCTGAGAAACAGCATGACCCAGGAGTCTGTCCGTAGGGCCTCCAGGAGATCCTTCCTGAAGAAGGCTCGGCTGGGCAGCTCCACCTGCAGCAGTAACGTCAGCGGGCTTGATGGCAGCGGTAAGCAGTCACCATCAAGTCTGGGTCCTCGTCTCAGTGCCAAGCGAAGAGTAGCAGCGGAAGCTAAAGAGGACTTCCAGACCCCCGGGAAGAAGCCTTCACCCCTCAAGAAGAGCCAGAGTGTGAGGCCCAACGTGAGGTCGTTTCTCCACACGGTCCAGAAGAACCAGATGATGCCGATGAACCCTGGGTCTCTGGGACGCAGCACGGTCATGAAGCCCTTCATTCAACACACCACGCCGGACAGAGTCGACCTCAAGTCGGGCAGTGGTCTTGTGGAAAGAGAATGCCTGAAACTGGAAGCACTGAAGAAGAAGCAAGAgcaagaagaggagagggggaggaagaagatggaggaagagaagaggagaaaacaggaggagatgaagaagaagaagagggatgaACGGCTGCGGAGGGTAGTCGAGGCCCGGGTGAAGGAGGAACAGAAAGATAAGAAGATTCTCCAGATTGAGAAACACGACACACTGCAAGTGGAGCACATGGCAGAGGAGAAAGCCAAGGAGAAGGTGGCCGCCAAACGCCAGGACGAGCTggaactgaggaggaggaggaagaggaagaagattcAACAAGCTgaggaggaggagaagaagcgtCACCAGGAGCTGCAGACTAAGAGGAGAGcagaagaggagcagGAGAGGACTCGCAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACTCGCAAGATGGCTGAGGCCCGACTAGCAATGGaggaagaacaggagagagagagacgagatgCAGCTGAAAGGGATCGGGTGAAGAGGGAACAGACGTTTGCTCTTCAGAGAGACGTGGACAGAgctgccggagagagagagaggaaagagttgaggatgaaggagaggaggaggaggaggGAGGAACAGCAGAGGCGAGCggaggaggagagacacagagaagcagccagacagacagaaacggAGGCTGCCACCACTGTTGCCACGAGTCACCTGACTGCTGAAGTTGAGACGCCCGTAGGGAAGGGAGGATTAATCAACCGCACTGCAGATATCAAGCAGTCTCCGCAGTCGTATGAGATCACTCCTAAGGGGGGCGACAAGCCCGTTGTTCTCAACACCAACGCCGAGGACTATGGGATGGATCAGAACAGTGAGGACTCTACTGATGATGAGTCGGCACCAAGGAAACCCATTCCCAAATGGGCCAAGGGCGACCAGCTGAAACAGTCCATGAAGAGGCAATATTTCAACCCAACGGACGTGGACTGTCACTATGGAGAGATTGAACCTCCAATGTTGAACCACATCTTCTACAAGAACAAACCTCGTTACCTCAAACGTACCAGTTCTGGTATCTGGTACTCTCCTCCTAAAATGGAGGCTCTGCCCATTTAAACACTGGGAACTGGGATAGAATGggttttatattgtatttttgTTGCGTTTTTGTTCTTTTGCATGTGTTATATTATAGAACCCTCTGGTTGACGGACACCTGAAGTGACTGCAGATAAGTGCAAGAAATGTAgcaaaccattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgtatttttttatataaatgttgTATACATTTCAAAAATTCTCTTGAATAAAATGAGTAGAACATG
>XM_036969188.1
TCCCCAATTGGCTCAGACTGTTTAGAACAATTTAAACGGGTTTCAGCGGGTGTTGAAATCAAATTGGAGGAAAGACTGACTATTATGTTGCGCAGAGAATGATAATGGTGGATTATACGACGAATACTTTTATGAACATTATCGAAATCATCTGCAGTGTAGAGTGAACTGCTATCTCAGCGAAACGGATTGTATTTTGTCGAACCCGGAAGAGTGTTATGACAGCGACTATGAGCTCTGTACTGTCCTCAACACGCACCCTGCTGCAGATGTTCGATGTGAAAATACAAGCGTTTGCCAATGAAATTGAAAATGACCACATGGTGTGGCTGTTTGAGATCCAGCACGAAGCCAACCGCATATTCTCAAGTGACTTTAGTGCAGAACTGGAATTGATGCCAAAGACTCCATCACAGAAGAAGCGCAACCGTAGGAAACGTCTATCTGTGGGTCAGAATGAAAATCGCAACAAGAGACGCTTCTCCAAGGGAAAGCGCAGCGACCTGCGTCGCTCCTCCGTGTCCACCTCCCTGAACCTGATAGCAGAGGATGAAGGAGGGTCCCCAGTCACAAGGGAAGAGCTGGTCAAACCCTCACGCGCTCGCAGAACCAAACAGACCACCCAGCCTGAGGTGGCATCACCTGTACGCAGCACCCACAAAGGAGCTGCTCAGACCTCCTCCTTCCAGCTGGAGGAGGCACAGCAGCAGGTGTCTCGCTCCATCAGCCAGATCCTGGAGGAGGAGGCTGAGAGTAAGAGGGGGGAGTCCAGCTCAGACTCCTTCCAGCCCCCATGTTTCACACCCCGTCGCCCCCCTCTGACCCAAAGCCACATAACTAAAGCCGTAGTTAAGATCTCAGCCTCCGAGCGGCAGTCTGCAGAGCTCCAGATGAACCCCAACGCAGAGCGCTCTCCAGGCCGCGCCGCCATTAAGATAGTCATTGCTGCTGCCACGCACTTCGGCCCCAGACGGAGCTCTGTGCGGCTCTCCCTGGCAGGGCTGAGAAACAGCATGACCCAGGAGTCTGTCCGTAGGGCCTCCAGGAGATCCTTCCTGAAGAAGGCTCGGCTGGGCAGCTCCACCTGCAGCAGTAACGTCAGCGGGCTTGATGGCAGCGGTAAGCAGTCACCATCAAGTCTGGGTCCTCGTCTCAGTGCCAAGCGAAGAGTAGCAGCGGAAGCTAAAGAGGACTTCCAGACCCCCGGGAAGAAGCCTTCACCCCTCAAGAAGAGCCAGAGTGTGAGGCCCAACGTGAGGTCGTTTCTCCACACGGTCCAGAAGAACCAGATGATGCCGATGAACCCTGGGTCTCTGGGACGCAGCACGGTCATGAAGCCCTTCATTCAACACACCACGCCGGACAGAGTCGACCTCAAGGAAAGAGAATGCCTGAAACTGGAAGCACTGAAGAAGAAGCAAGAgcaagaagaggagagggggaggaagaagatggaggaagagaagaggagaaaacaggaggagatgaagaagaagaagagggatgaACGGCTGCGGAGGGTAGTCGAGGCCCGGGTGAAGGAGGAACAGAAAGATAAGAAGATTCTCCAGATTGAGAAACACGACACACTGCAAGTGGAGCACATGGCAGAGGAGAAAGCCAAGGAGAAGGTGGCCGCCAAACGCCAGGACGAGCTggaactgaggaggaggaggaagaggaagaagattcAACAAGCTgaggaggaggagaagaagcgtCACCAGGAGCTGCAGACTAAGAGGAGAGcagaagaggagcaggagaggactCGTAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACTCGCAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACCCGCAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACTCGCAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACTCGCAAGATGGCTGAGGCCCGACTAGCAATGGaggaagaacaggagagagagagacgagatgCAGCTGAAAGGGATCGGGTGAAGAGGGAACAGACGTTTGCTCTTCAGAGAGACGTGGACAGAgctgccggagagagagagaggaaagagttgaggatgaaggagaggaggaggaggaggGAGGAACAGCAGAGGCGAGCggaggaggagagacacagagaagcagccagacagacagaaacggAGGCTGCCACCACTGTTGCCACGAGTCACCTGACTGCTGAAGTTGAGACGCCCGTAGGGAAGGGAGGATTAATCAACCGCACTGCAGATATCAAGCAGTCTCCGCAGTCGTATGAGATCACTCCTAAGGGGGGCGACAAGCCCGTTGTTCTCAACACCAACGCCGAGGACTATGGGATGGATCAGAACAGTGAGGACTCTACTGATGATGAGTCGGCACCAAGGAAACCCATTCCCAAATGGGCCAAGGGCGACCAGCTGAAACAGTCCATGAAGAGGCAATATTTCAACCCAACGGACGTGGACTGTCACTATGGAGAGATTGAACCTCCAATGTTGAACCACATCTTCTACAAGAACAAACCTCGTTACCTCAAACGTACCAGTTCTGGTATCTGGTACTCTCCTCCTAAAATGGAGGCTCTGCCCATTTAAACACTGGGAACTGGGATAGAATGggttttatattgtatttttgTTGCGTTTTTGTTCTTTTGCATGTGTTATATTATAGAACCCTCTGGTTGACGGACACCTGAAGTGACTGCAGATAAGTGCAAGAAATGTAgcaaaccattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgtatttttttatataaatgttgTATACATTTCAAAAATTCTCTTGAATAAAATGAGTAGAACATG
>XM_036969187.1
CCCCAATTGGCTCAGACTGTTTAGAACAATTTAAACGGGTTTCAGCGGGTGTTGAAATCAAATTGGAGGAAAGACTGACTATTATGTTGCGCAGAGAATGATAATGGTGGATTATACGACGAATACTTTTATGAACATTATCGAAATCATCTGCAGTGTAGAGTGAACTGCTATCTCAGCGAAACGGATTGTATTTTGTCGAACCCGGAAGAGTGTTATGACAGCGACTATGAGCTCTGTACTGTCCTCAACACGCACCCTGCTGCAGATGTTCGATGTGAAAATACAAGCGTTTGCCAATGAAATTGAAAATGACCACATGGTGTGGCTGTTTGAGATCCAGCACGAAGCCAACCGCATATTCTCAAGTGACTTTAGTGCAGAACTGGAATTGATGCCAAAGACTCCATCACAGAAGAAGCGCAACCGTAGGAAACGTCTATCTGTGGGTCAGAATGAAAATCGCAACAAGAGACGCTTCTCCAAGGGAAAGCGCAGCGACCTGCGTCGCTCCTCCGTGTCCACCTCCCTGAACCTGATAGCAGAGGATGAAGGAGGGTCCCCAGTCACAAGGGAAGAGCTGGTCAAACCCTCACGCGCTCGCAGAACCAAACAGACCACCCAGCCTGAGGTGGCATCACCTGTACGCAGCACCCACAAAGGAGCTGCTCAGACCTCCTCCTTCCAGCTGGAGGAGGCACAGCAGCAGGTGTCTCGCTCCATCAGCCAGATCCTGGAGGAGGAGGCTGAGAGTAAGAGGGGGGAGTCCAGCTCAGACTCCTTCCAGCCCCCATGTTTCACACCCCGTCGCCCCCCTCTGACCCAAAGCCACATAACTAAAGCCGTAGTTAAGATCTCAGCCTCCGAGCGGCAGTCTGCAGAGCTCCAGATGAACCCCAACGCAGAGCGCTCTCCAGGCCGCGCCGCCATTAAGATAGTCATTGCTGCTGCCACGCACTTCGGCCCCAGACGGAGCTCTGTGCGGCTCTCCCTGGCAGGGCTGAGAAACAGCATGACCCAGGAGTCTGTCCGTAGGGCCTCCAGGAGATCCTTCCTGAAGAAGGCTCGGCTGGGCAGCTCCACCTGCAGCAGTAACGTCAGCGGGCTTGATGGCAGCGGTAAGCAGTCACCATCAAGTCTGGGTCCTCGTCTCAGTGCCAAGCGAAGAGTAGCAGCGGAAGCTAAAGAGGACTTCCAGACCCCCGGGAAGAAGCCTTCACCCCTCAAGAAGAGCCAGAGTGTGAGGCCCAACGTGAGGTCGTTTCTCCACACGGTCCAGAAGAACCAGATGATGCCGATGAACCCTGGGTCTCTGGGACGCAGCACGGTCATGAAGCCCTTCATTCAACACACCACGCCGGACAGAGTCGACCTCAAGTCGGGCAGTGGTCTTGTGGAAAGAGAATGCCTGAAACTGGAAGCACTGAAGAAGAAGCAAGAgcaagaagaggagagggggaggaagaagatggaggaagagaagaggagaaaacaggaggagatgaagaagaagaagagggatgaACGGCTGCGGAGGGTAGTCGAGGCCCGGGTGAAGGAGGAACAGAAAGATAAGAAGATTCTCCAGATTGAGAAACACGACACACTGCAAGTGGAGCACATGGCAGAGGAGAAAGCCAAGGAGAAGGTGGCCGCCAAACGCCAGGACGAGCTggaactgaggaggaggaggaagaggaagaagattcAACAAGCTgaggaggaggagaagaagcgtCACCAGGAGCTGCAGACTAAGAGGAGAGcagaagaggagcaggagaggactCGTAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACTCGCAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACCCGCAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACTCGCAAGATGGCTGAGGCCCGACTAGCAATGGAGGAAGAACAGGAGAGGACTCGCAAGATGGCTGAGGCCCGACTAGCAATGGaggaagaacaggagagagagagacgagatgCAGCTGAAAGGGATCGGGTGAAGAGGGAACAGACGTTTGCTCTTCAGAGAGACGTGGACAGAgctgccggagagagagagaggaaagagttgaggatgaaggagaggaggaggaggaggGAGGAACAGCAGAGGCGAGCggaggaggagagacacagagaagcagccagacagacagaaacggAGGCTGCCACCACTGTTGCCACGAGTCACCTGACTGCTGAAGTTGAGACGCCCGTAGGGAAGGGAGGATTAATCAACCGCACTGCAGATATCAAGCAGTCTCCGCAGTCGTATGAGATCACTCCTAAGGGGGGCGACAAGCCCGTTGTTCTCAACACCAACGCCGAGGACTATGGGATGGATCAGAACAGTGAGGACTCTACTGATGATGAGTCGGCACCAAGGAAACCCATTCCCAAATGGGCCAAGGGCGACCAGCTGAAACAGTCCATGAAGAGGCAATATTTCAACCCAACGGACGTGGACTGTCACTATGGAGAGATTGAACCTCCAATGTTGAACCACATCTTCTACAAGAACAAACCTCGTTACCTCAAACGTACCAGTTCTGGTATCTGGTACTCTCCTCCTAAAATGGAGGCTCTGCCCATTTAAACACTGGGAACTGGGATAGAATGggttttatattgtatttttgTTGCGTTTTTGTTCTTTTGCATGTGTTATATTATAGAACCCTCTGGTTGACGGACACCTGAAGTGACTGCAGATAAGTGCAAGAAATGTAgcaaaccattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgtatttttttatataaatgttgTATACATTTCAAAAATTCTCTTGAATAAAATGAGTAGAACATG
>TU2509359
CCTTCATGTTCTCCCATGGCCCACGACGAAGACGCCCGTAGGGAAGGGAGGATTAATCAACCGCACTGCAGATATCAAGCAGTCTCCGCAGTCGTATGAGATCACTCCTAAGGGGGGCGACAAGCCCGTTGTTCTCAACACCAACGCCGAGGACTATGGGATGGATCAGAACAGTGAGGACTCTACTGATGATGAGTCGGCACCAAGGAAACCCATTCCCAAATGGGCCAAGGGCGACCAGCTGAAACAGTCCATGAAGAGGCAATATTTCAACCCAACGGACGTGGACTGTCACTATGGAGAGATTGAACCTCCAATGTTGAACCACATCTTCTACAAGAACAAACCTCGTTACCTCAAACGTACCAGTTCTGGTATCTGGTACTCTCCTCCTAAAATGGAGGCTCTGCCCATTTAAACACTGGGAACTGGGATAGAATGggttttatattgtatttttgTTGCGTTTTTGTTCTTTTGCATGTGTTATATTATAGAACCCTCTGGTTGACGGACACCTGAAGTGACTGCAGATAAGTGCAAGAAATGTAgcaaac

Function

NR:

description
PREDICTED: inner centromere protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969189.1 False 2865 mRNA 0.50 15 4970661 4994824
XM_036969188.1 False 2997 mRNA 0.50 13 4970664 4994824
XM_036969187.1 False 3014 mRNA 0.50 14 4970665 4994824
TU2509359 True 557 TUCP 0.48 2 4993402 4994620

Neighbor

gene id symbol gene type direction distance location
LOC110521175 NA coding upstream 22536 4886618 ~ 4950815 (+)
LOC110522695 LOC106590753 coding upstream 101009 4848156 ~ 4869652 (+)
LOC118945760 NA coding upstream 261272 4704102 ~ 4713241 (+)
LOC118945757 LOC106584793 coding upstream 272213 4566366 ~ 4698448 (+)
LOC118945759 NA coding upstream 399698 4570173 ~ 4570963 (+)
rab3il1 LOC106584776 coding downstream 10806 5005630 ~ 5033497 (+)
LOC110522698 LOC106593352 coding downstream 217542 5212366 ~ 5246288 (+)
saal1 saal1 coding downstream 256863 5251687 ~ 5266581 (+)
tph1a LOC106584760 coding downstream 303232 5298056 ~ 5308255 (+)
LOC118945903 NA coding downstream 314551 5309375 ~ 5309554 (+)
G2193550 NA non-coding upstream 27296 4941251 ~ 4943365 (+)
G2193529 NA non-coding upstream 113567 4856541 ~ 4857094 (+)
G2193528 NA non-coding upstream 124338 4845885 ~ 4846323 (+)
G2193527 LOC106584778 non-coding upstream 125787 4844477 ~ 4844874 (+)
G2193584 NA non-coding downstream 22781 5017605 ~ 5019282 (+)
G2193586 NA non-coding downstream 27441 5022265 ~ 5043472 (+)
G2193587 NA non-coding downstream 27998 5022822 ~ 5023391 (+)
G2193603 NA non-coding downstream 72970 5067794 ~ 5069314 (+)
G2193612 NA non-coding downstream 116410 5111234 ~ 5122115 (+)
G2193497 NA other upstream 191397 4777700 ~ 4779264 (+)
LOC110521161 LOC106584807 other upstream 1033562 3931206 ~ 3937155 (+)
G2192425 LOC106584810 other upstream 1060295 3910104 ~ 3910366 (+)
LOC110521165 fintrim other upstream 1184953 3784498 ~ 3796399 (+)
G2193611 LOC106584794 other downstream 111234 5106058 ~ 5108156 (+)
G2193620 NA other downstream 128689 5123513 ~ 5124709 (+)
G2193655 NA other downstream 203702 5198526 ~ 5200369 (+)
G2193690 NA other downstream 320956 5315780 ~ 5316614 (+)
G2193571 NA non-coding upstream 9830 4982954 ~ 4983572 (+)

Expression


Co-expression Network