hps5 (hps5)


Basic Information

Item Value
gene id hps5
gene name hps5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 5071948 ~ 5122084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969472.1
TAAATTCAGACTTTTCAGGAAGTGTGTCCCATCACAACCGGAGGCGGAGGAGTCGACAGTTCATTCTAGCTAGAAAGTAAACAACTCACGTTAGTTAAACACACACAGCTAAGGACATGAACTGATAGTAAACTGTGTATCACGAAGATTGAATCGCGATTTAAACAGCGGGGACTGTAATGCCTGcTGGTCAGGACTGTAACCATGCCCATGTTACCTGTAGTGCCTGAAGTTCAGAGTCATGTGCTGGCTGAGTTTGACTGTCTGGACCCCCTGCTCTCTGCACTccgcctggactctggcaggctCAAGTGCACCTGTCTGGCTGTATCAAGGAAGTGGCTAGCTTTGGGAACGTCAGCTGGAGGGCTGCACCTCATCCAGAGGGAAGGATGGAAGCAGAGGCTCATCCTCACACACAAGGAGGGATCTATCACTCAGGTGTCGTGTTGTCCACACGATGAAGACTTTATTGCTGTGGCAACAagtCAGGGCCTGGTGGTAGTGTGGGAGCTTCAACTTGAGCGTCGTGGCAGACCAGAGAGGGTCAGTGTTTCCTGGGAACACCGTGGCCAGACGCTCACCTCTCTCTGCTGGGACACCGCAGCCCTCAGGGTGTTTGCTGGGGATAAGGGGGGCAAGGTGTCCTTCCTCCGCGCTGGATCCTCCAAACTCGGAAAGGGCTCAGCGTTTGTGATCTTCCCCGTCCAGACCATCACTACTGTGGATTCCAGAGTGGTTCAGCTGGGTTATCTGGACGGACGACTGCTTGTGTCCTCTCTCAGCCGCTGCTACCTCTGTGACACGGAGAGAGAGAAGTTCTGGCGTGTCGGTAACAAGGAGCGGGACGGAGAATACGGAGCGTGTTTCTTCCCTCTGAGCCGCGGCGTGATcgttggccaacaacctcctccTCTGCTGTACTGTGCCAGGCCTGGGTCTAGAGTCTGGGAGGCCAGCTTCAGTGGAGATGTCCTCAGCACGCACCAGTTTAAACAGCTGCTGGCCGTACCACCTGCACCTCTCATCAGctacagAAGTGAGCCCCATTACAACCGAGCCCAGAAGAGTTCCCAGTCCATAGCCTTCCCCAGACTGTTATACTTTGGGGATCAGAACCTGCTGACGTGGACAGACTCGGCTATCTATGTCTTCACTCCTCAGAGTGGCCAGGTACTGCTGTGGACCGAGGTCAAAGaCGTGGTTGAGATAGCGGTGTACCGCAACGAGCTGTTCTGTCTCCGTGGCGACGGCCGCATGTCCCACCTCTCGCTGTTGTCTGTGGAGCGGTGTGTCGACAGGTTGCTACGCAGGGAGGCGTGGTCTCTAGCGGCCACGGTCTGCGTGATGTTTCAACATGCGATCGCCCCCAGCAAGGCCAGGAAGTCGATTCCCATCGACCGACTGGATCACCTGAGGTCACAGCTCAGTGTGACCACCCACCTGGATCTGATTGGCCAGCTGGAGGAAGTGGTCGCCAAGCTGGAGCCTCTAGACTCCGCCTCCAGCAGTCGCAGGAGCAGCATCTCCTCTCATGAGAGCTTCAACGTCCTGGACTGTGGCATCTACCGTGTCATTAGCCGGCGAGGCAGCCAATCAGACGAGGAGACCAGCTCCCTGGTCAGCCAATCGATGCTTGAGGAGGAGCGGCTGAAGGAGTTTAGCTTTgttcaggaggaggaggagcagcaggggGCGGAGCATGATCCCCAGAGCGGTGGTGGTTTGGAGGTTACTGAACCCAGCGGTAACCACCAGTTCCACCTCCCCCTGTCATTCCGCCCCAAACACTCCCGCATCGCCCTGCAGGCCGTCAGAGACAGtgtctccagttttgtgaagaagacTACTGAGAAGATCAACACTCTCCAGATGAACTCTGACCTCTGGCCACGTCCCCCTGACCCTAAGGACGGGAGTCAAGGACATGTGGAGGCCGTAGCTACCACTGTACCGTTCCCAGAGGACGGTGACCACGAGGAGTGTCTGGACCAAGGAAATGCAGAGACGGATCAACAGGACCTGATAACGGCTACAGAGAAAGGGATCTCTCAGATCCAGGATCCCTTGGTTCTGTTGGACCCAGCCTGTCTCAAAGAAACTCTACAGGAGTGGATCCCTGTGTTGGAGAGGGTTCTAGGTCCTGAGCTGGATCTAGGTCTGGGAAAGCAGAGTCcagctggtgaggaggaggagacggaagATGCTGCAGACAACCGTCCAGAGAACGTTCAGTCTGAGATCCCCTCGAGCTCTCCTGAGGGccaggaggaagggaagagaggagaggattccCCACAACAAAATGGAGGACAAGAGGACCAGAGGGAGGCTCAGGACCATCACAGACCTGACGAGGCCTCCACTGAAGAGAACCTGAGGGTGTGGTCCCCCAAACCTCTCCCCCCAGACCTCCAGGCTCACCTTACCCAGCTGGCCACTCTGTACCTGGAGCTGGGTTATTTTGGGGACCCCGTTGTCCAGAAAGAGAGGGGTGTAGTAGGGGTCAATGCATTCTTGAGACGGTTCTTCTTCCTTCTGGACCAGGAGCGGGTGAGGAGGATGTGTCTACTCGGCTACGGGGACCAGCCTGAGGTCCACATCTCCTTCATGGAGGCCATGCTAGAGCTAACCCAGTCCAGTAAGGTGGTAGAGGTGATCCAGAAAGGAGACCTGCTCAAATCTCTACGCTGTCTCAGAGAACTACAACCCTGGAGCGCTCCGATGCTCCTCGCTCACCTGCACAGGTTGTATGAGAAACATGGAGAGTTAGCCGTTCGCTCCTTCACCCAGTTCTATCCCACAATCCTCCCCTCTGACGTCACAGCCATGGCCAAACATAGCCACTTCCTGGCTTACCTAGACAACCTTGTCCAATCACGGGCCGAGGAACAAAGACTGTCGTTCCTTGGGTCCCTCCTCCAACCAGAGGCTCTGCGACAGGATTGGCTGGGGCTGGCCCTTACCCACGATGCACCTCAAAAGAGCGACACACTGACCACAGACGGACAACCGAGATGGCACTCCCATTTCTTCAGCTGGGGTTATGGTCGTCTCCTATCCCTCCTGATACGCCTTCCAGCTGACCTGGCCTCCAAACAGAAGATGGCTGAGACATGCAGGATCAACGGGTACTGGACTGGCTATGTGTACCTGTGCTGTGAGCTCCAACGTCGTACAGAGGCTTTCTCTACCATCTGTAGACTGGACGACATGAGTCTGCTGGAGGAACCCAGTGGCATGGTGCCTCAGACCATGGATGAGTGGAAGATGCTTCTCCAGCTCTCTCAGCAGTGTAGTAACAGCAGACCGTCTGACCATATCCCAACCCCAGATCCCAACCCCTCCTCGGCTCCCACCCCCTCCTCGGCTCCCACCCCCTCCTTGGCTCCTACCCCTTCCCTGGCTCCTACCCCTTCCCTGGCTCCTACCCCTTCCCTGGCTCCTACCCCTTCCCTGGCTCCTACCCCTTCCCTGGCTCCTACCCCTTCCCTGGCCCTAGCCTCCAACGGGACCAGCCCCAGCCTGACCAACGGTGGCTCTGCAGCTGACCATATCCAGACAGAGGTGACTCCAGAGAACCTGGTCTTGCGTCTGGCCCGGGCTGTGGGCCCCGACCGGGCCTTTGAGGCCCTACAGGAGGTGGGGATGCAGTCGGACATGGAGCTGGGGCCACACTCCACCCTGGTCTGTGAGCTTCTCCGTGTGGCTGAGAAGAGACAGAGGGCTCTGATCCAGACCATGCTGGAGCGCTGTGATCGCTTCCTCTGGTCCCAGCATGCTTAGTGAGACAACACCAACCAACGCGCCTAGCGGGTCCTCAACCAACGCCATTCAGAACAACTATTACGGACAACTGCTATGGGGAGTAATGTTGGGGTCAATTCTATTTCCAATTCAGGCAGTTAAACGGAAATTTCATTTCCAGTTATCCACATTGAAAAAAGCAATttaattgactgaattgaaatgcaaTTGATCCCAGCCCTGATCTGATCCAGAGCCGATCTGATCCGAAACAAGTTAAATTACCCTTAATGTGACCACAATGCTTACTAACTACTTTTTAAAACTGGGCCCTAATCGTTTATGTTGTACTGTTCATGACTACTTTTTAAAACTGGGCCCTAATAATTTATGATGCACCATTCCGGAGTTCCATTCCGCACCAACATTCTAGAATGCGACCTGGTACTGTCTAGAGAGGTGACTGAATTCAAGTTGTTATATTTTATAGTTGCCAAACCCCTGCCTTACCGAAGAAATATGGGATTAATCCTATAAATGATCTGAAAGTATTGTTTTTGAATTGTGAGGTCCTCGGATGCATTTTCCAGCCTGATAATGGTATATCTGACTTCCTCCTTGGGTCAAACTACTGCAACATGGTTATAAAAGCACCTGAATGAATCGTTTTGAAGACATTTgtgaaaatataattttattgaaATGCTCTAGTCTATTAATATAATATTTAATGTGAATAATAAAATATATGATGGTGA
>XM_036969473.1
AGTAAATTCAGACTTTTCAGGAAGTGTGTCCCATCACAACCGGAGGCGGAGGAGTCGACAGTTCATTCTAGCTAGAAAGTAAACAACTCACGTTAGTTAAACACACACAGCTAAGGACATGAACTGATAGTAAACTGTGTATCACGAAGATTGAATCGCGATTTAAACAGCGGGGACTGTAATGCCTGcTGGTCAGGACTGTAACCATGCCCATGTTACCTGTAGTGCCTGAAGTTCAGAGTCATGTGCTGGCTGAGTTTGACTGTCTGGACCCCCTGCTCTCTGCACTccgcctggactctggcaggctCAAGTGCACCTGTCTGGCTGTATCAAGGAAGTGGCTAGCTTTGGGAACGTCAGCTGGAGGGCTGCACCTCATCCAGAGGGAAGGATGGAAGCAGAGGCTCATCCTCACACACAAGGAGGGATCTATCACTCAGGTGTCGTGTTGTCCACACGATGAAGACTTTATTGCTGTGGCAACAagtCAGGGCCTGGTGGTAGTGTGGGAGCTTCAACTTGAGCGTCGTGGCAGACCAGAGAGGGTCAGTGTTTCCTGGGAACACCGTGGCCAGACGCTCACCTCTCTCTGCTGGGACACCGCAGCCCTCAGGGTGTTTGCTGGGGATAAGGGGGGCAAGGTGTCCTTCCTCCGCGCTGGATCCTCCAAACTCGGAAAGGGCTCAGCGTTTGTGATCTTCCCCGTCCAGACCATCACTACTGTGGATTCCAGAGTGGTTCAGCTGGGTTATCTGGACGGACGACTGCTTGTGTCCTCTCTCAGCCGCTGCTACCTCTGTGACACGGAGAGAGAGAAGTTCTGGCGTGTCGGTAACAAGGAGCGGGACGGAGAATACGGAGCGTGTTTCTTCCCTCTGAGCCGCGGCGTGATcgttggccaacaacctcctccTCTGCTGTACTGTGCCAGGCCTGGGTCTAGAGTCTGGGAGGCCAGCTTCAGTGGAGATGTCCTCAGCACGCACCAGTTTAAACAGCTGCTGGCCGTACCACCTGCACCTCTCATCAGctacagAAGTGAGCCCCATTACAACCGAGCCCAGAAGAGTTCCCAGTCCATAGCCTTCCCCAGACTGTTATACTTTGGGGATCAGAACCTGCTGACGTGGACAGACTCGGCTATCTATGTCTTCACTCCTCAGAGTGGCCAGGTACTGCTGTGGACCGAGGTCAAAGaCGTGGTTGAGATAGCGGTGTACCGCAACGAGCTGTTCTGTCTCCGTGGCGACGGCCGCATGTCCCACCTCTCGCTGTTGTCTGTGGAGCGGTGTGTCGACAGGTTGCTACGCAGGGAGGCGTGGTCTCTAGCGGCCACGGTCTGCGTGATGTTTCAACATGCGATCGCCCCCAGCAAGGCCAGGAAGTCGATTCCCATCGACCGACTGGATCACCTGAGGTCACAGCTCAGTGTGACCACCCACCTGGATCTGATTGGCCAGCTGGAGGAAGTGGTCGCCAAGCTGGAGCCTCTAGACTCCGCCTCCAGCAGTCGCAGGAGCAGCATCTCCTCTCATGAGAGCTTCAACGTCCTGGACTGTGGCATCTACCGTGTCATTAGCCGGCGAGGCAGCCAATCAGACGAGGAGACCAGCTCCCTGGTCAGCCAATCGATGCTTGAGGAGGAGCGGCTGAAGGAGTTTAGCTTTgttcaggaggaggaggagcagcaggggGCGGAGCATGATCCCCAGAGCGGTGGTGGTTTGGAGGTTACTGAACCCAGCGGTAACCACCAGTTCCACCTCCCCCTGTCATTCCGCCCCAAACACTCCCGCATCGCCCTGCAGGCCGTCAGAGACAGtgtctccagttttgtgaagaagacTACTGAGAAGATCAACACTCTCCAGATGAACTCTGACCTCTGGCCACGTCCCCCTGACCCTAAGGACGGGAGTCAAGGACATGTGGAGGCCGTAGCTACCACTGTACCGTTCCCAGAGGACGGTGACCACGAGGAGTGTCTGGACCAAGGAAATGCAGAGACGGATCAACAGGACCTGATAACGGCTACAGAGAAAGGGATCTCTCAGATCCAGGATCCCTTGGTTCTGTTGGACCCAGCCTGTCTCAAAGAAACTCTACAGGAGTGGATCCCTGTGTTGGAGAGGGTTCTAGGTCCTGAGCTGGATCTAGGTCTGGGAAAGCAGAGTCcagctggtgaggaggaggagacggaagATGCTGCAGACAACCGTCCAGAGAACGTTCAGTCTGAGATCCCCTCGAGCTCTCCTGAGGGccaggaggaagggaagagaggagaggattccCCACAACAAAATGGAGGACAAGAGGACCAGAGGGAGGCTCAGGACCATCACAGACCTGACGAGGCCTCCACTGAAGAGAACCTGAGGGTGTGGTCCCCCAAACCTCTCCCCCCAGACCTCCAGGCTCACCTTACCCAGCTGGCCACTCTGTACCTGGAGCTGGGTTATTTTGGGGACCCCGTTGTCCAGAAAGAGAGGGGTGTAGTAGGGGTCAATGCATTCTTGAGACGGTTCTTCTTCCTTCTGGACCAGGAGCGGGTGAGGAGGATGTGTCTACTCGGCTACGGGGACCAGCCTGAGGTCCACATCTCCTTCATGGAGGCCATGCTAGAGCTAACCCAGTCCAGTAAGGTGGTAGAGGTGATCCAGAAAGGAGACCTGCTCAAATCTCTACGCTGTCTCAGAGAACTACAACCCTGGAGCGCTCCGATGCTCCTCGCTCACCTGCACAGGTTGTATGAGAAACATGGAGAGTTAGCCGTTCGCTCCTTCACCCAGTTCTATCCCACAATCCTCCCCTCTGACGTCACAGCCATGGCCAAACATAGCCACTTCCTGGCTTACCTAGACAACCTTGTCCAATCACGGGCCGAGGAACAAAGACTGTCGTTCCTTGGGTCCCTCCTCCAACCAGAGGCTCTGCGACAGGATTGGCTGGGGCTGGCCCTTACCCACGATGCACCTCAAAAGAGCGACACACTGACCACAGACGGACAACCGAGATGGCACTCCCATTTCTTCAGCTGGGGTTATGGTCGTCTCCTATCCCTCCTGATACGCCTTCCAGCTGACCTGGCCTCCAAACAGAAGATGGCTGAGACATGCAGGATCAACGGGTACTGGACTGGCTATGTGTACCTGTGTTAGGACTGTTATAATGACTGTTCTCTGTGCAGGTACTGGACTGGCTATGTGTACCTGTGTTAGGACTGTTATAATGACTGTTCTCTGTGCAGGTAGTGGACTGGGTATGTGTACCTGTGTTAGGACTGTTATAATGACTGTGTTCTCTGTGCAGGTACTGGACTGGCTATGTGTACCTGTGTTAGGACTGTTATAATGACTGTGTTCTCTGTGCAGGTACTGGACTGGCTATGTGTACCTGTGTTAGGACTGTTA
>TU2509890
TTCCCTGGCCCTAGCCTCCAACGGGACCAGCCCCAGCCTGACCAACGGTGGCTCTGCAGCTGACCATATCCAGACAGAGGTGACTCCAGAGAACCTGGTCTTGCGTCTGGCCCGGGCTGTGGGCCCCGACCGGGCCTTTGAGGCCCTACAGGAGGTGGGGATGCAGTCGGACATGGAGCTGGGGCCACACTCCACCCTGGTCTGTGAGCTTCTCCGTGTGGCTGAGAAGAGACAGAGGGCTCTGATCCAGACCATGCTGGAGCGCTGTGATCGCTTCCTCTGGTCCCAGCATGCTTAGTGAGACAACACCAACCAACGCGCCTAGCGGGTCCTCAACCAACGCCATTCAGAACAACTATTACGGACAACTGCTATGGGGAGTAATGTTGGGGTCAATTCTATTTCCAATTCAGGCAGTTAAACGGAAATTTCATTTCCAGTTATCCACATTGAAAAAAGCAATttaattgactgaattgaaatgcaaTTGATCCCAGCCCTGATCTGATCCAGAGCCGATCTGATCCGAAACAAGTTAAATTACCCTTAATGTGACCACAATGCTTACTAACTACTTTTTAAAACTGGGCCCTAATCGTTTATGTTGTACTGTTCATGACTACTTTTTAAAACTGGGCCCTAATAATTTATGATGCACCATTCCGGAGTTCCATTCCGCACCAACATTCTAGAATGCGACCTGGTACTGTCTAGAGAGGTGACTGAATTCAAGTTGTTATATTTTATAGTTGCCAAACCCCTGCCTTACCGAAGAAATATGGGATTAATCCTATAAATGATCTGAAAGTATTGTTTTTGAATTGTGAGGTCCTCGGATGCATTTTCCAGCCTGATAATGGTATATCTGACTTCCTCCTTGGGTCAAACTACTGCAACATGGTTATAAAAGCACCTGAATGAATCGTTTTGAAGACATTTgtgaaaatataattttattgaaATGC

Function

symbol description
hps5 Acts upstream of or within developmental pigmentation; notochord development; and regulation of compound eye pigmentation. Predicted to be located in cytoplasm. Predicted to be part of BLOC-2 complex. Is expressed in cranial ganglion; epidermis; neurons; notochord; and spinal cord. Used to study Hermansky-Pudlak syndrome and proteinuria. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome and Hermansky-Pudlak syndrome 5. Orthologous to human HPS5 (HPS5 biogenesis of lysosomal organelles complex 2 subunit 2).

NR:

description
Hermansky-Pudlak syndrome 5 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969472.1 False 4505 mRNA 0.54 21 5071948 5122082
XM_036969473.1 False 3416 mRNA 0.55 19 5076170 5122084
TU2509890 True 965 lncRNA 0.46 2 5072000 5075634

Neighbor

gene id symbol gene type direction distance location
epx LOC106584777 coding downstream 4758 5039217 ~ 5067190 (-)
pidd1 pidd1 coding downstream 226626 4801210 ~ 4845322 (-)
LOC110521172 LOC106584780 coding downstream 281699 4735169 ~ 4790249 (-)
LOC118945761 NA coding downstream 353294 4717985 ~ 4718654 (-)
fads2 d6fad_b coding downstream 808666 4238239 ~ 4263282 (-)
gtf2h1 LOC106584761 coding upstream 1417 5123501 ~ 5144889 (-)
muc2.1 LOC106593352 coding upstream 28536 5150620 ~ 5187550 (-)
kcnc1b LOC106584763 coding upstream 221856 5343940 ~ 5415904 (-)
LOC118945784 NA coding upstream 225882 5347966 ~ 5350211 (-)
LOC110521187 LOC106584768 coding upstream 436297 5557683 ~ 5599839 (-)
G2193953 NA non-coding downstream 38473 5032543 ~ 5033475 (-)
G2193933 NA non-coding downstream 71658 4999804 ~ 5000290 (-)
G2193910 NA non-coding downstream 105780 4965935 ~ 4966168 (-)
G2193907 NA non-coding downstream 113219 4958484 ~ 4958729 (-)
G2193904 NA non-coding downstream 117009 4954737 ~ 4954939 (-)
G2193978 NA non-coding upstream 8165 5130249 ~ 5130713 (-)
G2193988 NA non-coding upstream 69008 5191092 ~ 5191733 (-)
G2193989 NA non-coding upstream 71224 5193308 ~ 5195230 (-)
G2193999 NA non-coding upstream 93652 5215736 ~ 5217519 (-)
G2193836 NA non-coding upstream 107792 5229876 ~ 5236009 (-)
G2193850 NA other downstream 277725 4793377 ~ 4795447 (-)
G2193810 NA other downstream 339087 4731727 ~ 4732861 (-)
G2193451 NA other downstream 386982 4681737 ~ 4684966 (-)
G2193421 NA other downstream 460481 4610762 ~ 4611467 (-)
G2193227 fd6d other downstream 808749 4190064 ~ 4263199 (-)
LOC110521194 svip other upstream 709217 5825537 ~ 5836399 (-)
LOC110522707 myo5c other upstream 1086778 6206342 ~ 6221642 (-)
G2194918 NA other upstream 1104262 6226346 ~ 6294511 (-)
G2195405 NA other upstream 1513246 6635330 ~ 6635951 (-)
G2195750 NA other upstream 2124650 7225447 ~ 7270413 (-)
G2193969 NA non-coding upstream 25090 5100724 ~ 5102708 (-)
G2193970 NA non-coding upstream 27101 5102735 ~ 5103307 (-)

Expression


Co-expression Network