gtf2h1 (LOC106584761)


Basic Information

Item Value
gene id gtf2h1
gene name LOC106584761
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 5123501 ~ 5144889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969474.1
TTGTTGTTCCACCGGAGGAATTTGAATGTTGCACAACTTGGCAGCCGTATCGATGGAGGAGCACGAAATACAAGTGGGCACAGTTTTATCATAAATATCGCGTTTAAATAACAATTACACTTAAATAAATTGTATGCTTCACATCGGCACAACACGAAACCAATACATCAACTGTAACAGCGTTGGAGTTTGAGCCATGGCAGCGTTGTCGGAGGAGGTGCTGCTGGTGGTGAAGAGGGTCCGACAGAGGAAGCAGGACGGGACCCTCTACCTGATGGCAGAGAGGATAGCCTGgggaccagaggggaaggaccgTTTCACTGTCAGCCACCTGTATGCTGACATACGCTGTCAGAAAATCAGCCCAGACGGCAAGGCCAAGATTCAGCTACAGTTGGTCCTACACACGGGGGAGAGCAccaacctccacttctccaaCGAGAGCACTGCCCTGAAAGACCGCGATGCAGCCAAGGACCTCCTCCAGCAGCTGCTGCCCAAATTCAAGAAGAGGGCTAACAAGGAACTGGAGGAGAAGAACAGaATGTTACAGGAAGATCCGGTGCTGTTCCAGCTGTACAAGGATCTGGTGGTGTGTCAGGTGATCAGCGCGGAGGAGTTCTGGGCCAATCGGCTGAGCATAAACAACGTGGACCACTCCCTCTCCAACAACAAGCAGGAAGTTGGCATCTCGGCAGCCTTCTTGGCGGACATCCGGCCCCAGACAGATGGCTGTAACGGCCTTAGATACAACCTTACATCTGACATTATCGAGTCAATCTTCAGAACGTACCCTGCAGTGAAACAGAAGTATGGTGAGAACGTTCCTCATAACATGACAGAGAAGGAGTTCTGGACGCGGTTCTTCCAGTCCCACTACTTCCACCGAGACCGCATCAACACGGGCCTGCAAGACATCTTCTCAGAGTGTGCAAAGCAAGACGAGAAGGGCCTGAAGTCCATGGTGTTCCAAGGAGTGAAGAACCCAATGGTGGACCTGCTGTCACTGGAGGATAAGTCGTTAGATGAGGGTTATGGGTCTAACTCCACAGCACCTTCTACGTCCAATACTAACAAGACCGTGAAGGAGAACAGTAACTCTGCCATAATCAAGAGGTTCAACCACCACAGTACCATGGTGCTGGCAGCAGGCTCCGGAAAGAAAGCGGATGCTCCTAACGGTCAGGCCTGTGAGACTAGCAGTACAGATGGAAACTCTAGGGATTCGGACTTCTTCCAACCACCCATTAAGAAGGTGAAAATACAAGATGTCATAGAGTATGAGGACCTTCATAGGGAGAATGGGAAGAAGACAGTGGCTCTGAACCTCAAGAAGTCTGACAGGTACTCTCATGGTCCCGTGCCTCTCCTGCCCCAACAGTACACCACCAGTCAAGACATCGTCAACTCTGTCAACTGTATAAAGCAGGAAATAGCCAGCTACAAACCCTGCCTTACTCAGGTGATGTCCAGCAGTACAGCCAGTTGTGCCATCGCCGCCCTCTCTCCAGGGGGTGTTCTCATGCAGGCGTTAGCACAGCAAGCCATTAACCAGATGGTTCCCAATGACGTTCAGGGGGAGCTGAAGCATCTGTACACGGCTGCTGGGGAGCTGCTGAGACACTTCTGGTCCTGTTTTCCTGTCAACACACTTTTCCTGGAAGAGAAGgtggtaAAGATGAGGTCCAACCTGGAGAGATTCCAGATGACCAAGCTCCGCCCCTTCCAGGAGAAAGTCCAGCGTCAATACCTGAGTACTAACCTTACTGGTCACCTTGAGGACATGTTTCAGATGGCCTACAATAAATTCCACGCCTGGCAAACACGTCGGATGATGAGGAAAACCTGAGAGGGGAGAAACTCATGGCTTTATCAGAGAGAATGGAAAGAATGAATGAACGAGTACAAGATGGATGGACAGACCTTATTCTACCTACCAGGCTGCTgtgtcagaggagagacagatggcatagtcgcccccccccccccccccccgggggtGAGATGAAGATTCAGATGGGTGCTGCTGTTAGCCTGCTAAAACCCCACAGGTCCATCAGACTGACACACTCACTAGGTCTCAATCACAAATTACTcttattagttttttttttttttgcgttttCCTCGGTGAATGGGATTCATGGGAAAATGTTGGGGTCATGACTCTCCGCTATAAGGTTTGAACAAACATAGGCtaactttcttttttttaaatgtgtataaAACGACCAGACTTCAGATGGGAAGTCAAAAAAGGAACTCAGGAACTGAACAGACTATGTTAAataacaatacatttttataagCAAAAGGACTGTGTGATGTGAAGCTTAACTTAATGTGAGATGTTCTCAGTACAGAGACTGAAAGATGGAGAGCTCAGTACAGATGCCACGCCCTTTTCTCAGTCCTCCCAGGCCTTTTTCCCCAGTCCTCCCAGGCCTTTTTCCCCAGTCCTCCCAGGCCTTTTTCCCCGGTCCTCCCAGGCCTTTTTCCCCGGTCCTCCCAGGCCTTTTTCCCCAGTCCTCCCAGGCCTTTTTCCCCCAGTCCTCCCAGGCCTTTTTCCCCCAGTCCTCCCAGGCCTTTTTCCCCCAGTCCTCCCAGGCCTTTTTCCCCCAGAGCTGAGGACCGGGTCCAGGGAACCTGTCTGTACGTTGGATGgaggctggctggcaggcaggcaacTGAATATAGCAATACTGTAAAGACATTTGTCTACTGTATGGCCACGTCCCCATAGGGCAcgctattccctagatagtgcacagCATTTGACAAGGGCCCTCAGAGCCCAATTGGCcctgggtcaaaagtagtgcactgaatagggtGCTAATTTGAGATGTTGACTCTGCCCCCAATCACACTTTAAAACTGCACTGGTATGTAATGTCTGTTCTGTTTCTAGCTGCACTGAAGACACCGTCTGGATGTTAACTCAAACATTAAAGTGAAATAtattaatgtt

Function

NR:

description
general transcription factor IIH subunit 1

GO: NA

KEGG:

id description
K03141 TFIIH1, GTF2H1, TFB1; transcription initiation factor TFIIH subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969474.1 True 2971 mRNA 0.50 15 5123501 5144889

Neighbor

gene id symbol gene type direction distance location
hps5 hps5 coding downstream 1417 5071948 ~ 5122084 (-)
epx LOC106584777 coding downstream 56311 5039217 ~ 5067190 (-)
pidd1 pidd1 coding downstream 278179 4801210 ~ 4845322 (-)
LOC110521172 LOC106584780 coding downstream 333252 4735169 ~ 4790249 (-)
LOC118945761 NA coding downstream 404847 4717985 ~ 4718654 (-)
muc2.1 LOC106593352 coding upstream 5731 5150620 ~ 5187550 (-)
kcnc1b LOC106584763 coding upstream 199051 5343940 ~ 5415904 (-)
LOC118945784 NA coding upstream 203077 5347966 ~ 5350211 (-)
LOC110521187 LOC106584768 coding upstream 413492 5557683 ~ 5599839 (-)
fancf fancf coding upstream 617951 5762840 ~ 5764816 (-)
G2193970 NA non-coding downstream 20194 5102735 ~ 5103307 (-)
G2193969 NA non-coding downstream 20793 5100724 ~ 5102708 (-)
G2193953 NA non-coding downstream 90026 5032543 ~ 5033475 (-)
G2193933 NA non-coding downstream 123211 4999804 ~ 5000290 (-)
G2193988 NA non-coding upstream 46203 5191092 ~ 5191733 (-)
G2193989 NA non-coding upstream 48419 5193308 ~ 5195230 (-)
G2193999 NA non-coding upstream 70847 5215736 ~ 5217519 (-)
G2193836 NA non-coding upstream 84987 5229876 ~ 5236009 (-)
G2193834 LOC106597596 non-coding upstream 99202 5244091 ~ 5246294 (-)
G2193850 NA other downstream 329278 4793377 ~ 4795447 (-)
G2193810 NA other downstream 390640 4731727 ~ 4732861 (-)
G2193451 NA other downstream 438535 4681737 ~ 4684966 (-)
G2193421 NA other downstream 512034 4610762 ~ 4611467 (-)
G2193227 fd6d other downstream 860302 4190064 ~ 4263199 (-)
LOC110521194 svip other upstream 686412 5825537 ~ 5836399 (-)
LOC110522707 myo5c other upstream 1063973 6206342 ~ 6221642 (-)
G2194918 NA other upstream 1081457 6226346 ~ 6294511 (-)
G2195405 NA other upstream 1490441 6635330 ~ 6635951 (-)
G2195750 NA other upstream 2101845 7225447 ~ 7270413 (-)

Expression


Co-expression Network