muc2.1 (LOC106593352)


Basic Information

Item Value
gene id muc2.1
gene name LOC106593352
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 5150620 ~ 5187550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968563.1
GCCCACTTCACCTGGACACTAACTATGGGGTGGACAACTCTGTGGTTGTGCGTTCTCGCTCTGCCACTAACGAGCGCCATCCAGGTGAAAGCCAAGAAAGCGCGCCAGTCCAACCATGTGAACAGCATCTGCAGCACCTGGGGCAGAGAGCACTTCAAGACCTTCGATGGAGACGTGTACCAGTTCCCAGGGACGTGTGAATACAACCTGGCCTCCGACTGCCACTCTGAGTCCTACCAGGAGTTCTCTGTGCACCTGAAGAGGAACGAGGCTACTGAGGCTGAGGGGAACCCTACGGTCAAACACGTAGTGGTCACTATCAACGACCTGGTCTTCCACCTGACCAAGACTCAGGTCGCGGTCAATGGAGAAATTGTAACTCTGCCGTACTACAATGGAGGAGTCCAACTGGAGAGGAATGCAGTTTACACCAAACTCTACTCCAAGGTTGGCCTGGTTGTCATGTGGAACGGAGAAGATGCCGTCATGGTGGAGCTGGACACGGAGTACACCAACCGTACCTGTGGTCTCTGTGGAGACTTCAATGGCCTTCCAGTCCACAATGAGTTTGTTCATAACGGTCGTAAAGTGAGCCCCATTGAGTTTGGAAACAGACAGAAGGTCCACAGGCCCAACGAGGACTGTGAAGACCCctatgaagaggaagaggaagatgaacCTGCAGACGTTCAGCCTAAAGAGGACACGTGCAAGGAGTTTcATGCCCAGTGTGACCAGCTCCTGCGCTCGCCGTTGTGGAGCTCCTGTGGTGCGGTCTTGAACCCTGAGCCCTACATCCAGGCCTGTGTCCAGGACCTGTGTGGCTGCAGCAACACTTCTGATAGCTTCTGTGTCTGCAGCACCCTGGCAGAGTACTCCAGACAGTGCTCCCACGCCGGGGGACAGCCACCCCACTGGAGAACAACAGCCTTCTGTGACAAGCAGTGTCCGTTCAACATGGTCTATCTGGAGAGTGGCTCTCCCTGCATGGATACCTGTACCCACTCAGACACCAGCTCACTGTGTGAAGAACACCTGATGGACGGCTGCTTCTGCCCTCACGggactgtgtttGATGACATCTCAAAGAGGGGGTGTGTCACTCAGGACCAGTGTCAGTGCAAACACGACAAAGTTTACAACTCTGGAGAAGTATTCAGACAGGACCGTGAGGAATGTGTCTGTCATCATGGTCAGTGGTCCTGTAAAAGTCTACCCAGCCCTGCTACATGTGCCGTTGAGGAGGGTTCACACGTGACAACCTTCGATGGGAAAGCGTTCACCTTCCATGGGGACTGTTACTACCCCTTAGCCAAGGTGGAAAGCAAGGATGAAGCCAGTCCAAAGTTCACTGTACTGGTCCAGCTGGTTCCCTGTATAAGACAGAAGTTTGACACTTGCCTCAAGAGTGTTGTGGTCTTGCTAAACAATGATAGAAACAACGCTTTGGTGATTACCGCCGATGGGAAAGTCAGCCACAATGCACAGATCACTCTGCCTTACAGCACAGCTGACATCAGTGTGTTCAAGCCATCGTCCTTCCACATGATGCTCCAGACCAGCTTTGGGCTGCAGGTTCAGATCCAGCTGGTCCCTATCATGCAGGTCTATGTCACCCTGGACGAGAGCTACAAGACCAAGACACAAgGTCTGTGTGGGAACTTCAACAAGGTTCTGTCTGATGACATGAAGACCCCCCAGGGTATGGTGGAGGGAACAGCCTCTTCATTTGGGAACTCCTGGAAGGCTAATCCTAcctgcagagacagagaggagaggctggacgACCCCTGCTCCCTCAGCGTGGAGAATGAGAACTATGCTAAACATTGGTGCTCCATGCTAAGAAGTTCTGACAGCACTTTTGCCAAGTGCCATGCCATGGTGGACCCCGAGCTTTACTACAAGCGATGCACGTACGCTAGCTGCAACTGTGAGAAGAGTGAAGACTGCCTGTGTGCCGTCTTCTCCTCCTATGTGCGAGACTGTGCTACCAAGGGAGTGGTCCTGTCGGGCtggagagagaacgtgtgtgACAAATACATTGGTAACTGCCCAGTGTCTCAGACCTACTCTGACCAGCTCCAGAGATGTCAGCTGACCTGTAGCTCCCTGGCCAGCAAAAGCCAGGGTTGTACCAATGACTTCCTCCCCGTGGATGGTTGTTCTTGCCCAGACGGACTCTACATGGATGACAGGGGCACCTGTGTACCCATGGACAAATGCCCCTGCTTCCACAACGGGGTCCACATCAAGCCTGGGAAGTCCATCAACATTCAGGAGGAACACTGTGTCTGCAACAATGGGAAGCTTCACTGCCGTTCGTGGAAGATGCGTTCAGAGAGTACCTGCCAGTCGCCAAAGGTGTTCTTGAACTGCTCCAATGACCTGGGAGTACAGTGTACACGGAGCTGTAGGAACCCGGATTTCATGGACTGTTTCGCCGCAGAGTGTGAGTCTGGGTGCAAGTGTCCCACGAGTCTGTGGGAGGATGGGAAAGGCATGTGTGTGAATAAACATGAATGCCCATGCAGCCATGACGGATTCCTCTACGCCCCAGGAAAACAGATCCCAAACGGATGTAACACTTGCACCTGTAAGAGTGGGAAATGGAAGTGCACAGATAAGAAGTGCCCAGGAACCTGTACCATCTACGGCAGTGGCCATTACAAAACCTTTGATGAGCGCACGTATGGCTTCCAAGGAAAATGTGGCTATGTGGCTGTCCAGAACAAATGTGGGAACCGGCCTGTCCAGGACAAATTCATGGTGATCACAGAGAACATACCGTGTGGAACCACAGGCACCACTTGCTCCAAGTCTGTCAGGGTTCAACTGGGGAGAACAGAGCTGAAACTATCAAAGGGGACCCATGAAGTGGTGGACCTAGGAGTGGGCTCTCAGATCCAGTACCGAGTGAGGACCGTCGGTCTGTACCTGATTGTTGAGTCAGACATCGGGATCGCAGTGCTGTGGGACCGCAAAACTACCGTCCGCATCGTCCTGGAGCCACAGCATAGTGGAGCAGTGTGCGGCCTGTGTGGGAACTATAATGGAGAAGGCAGAGATGACTTCACCACACAAGGTCAGATGATAGTCAGCAGCCCTGTGGAGTTTGCTAACAGCTGGAAAGTGTCAAGCACTTGTCCCGACGCAGAAAGCAACGTGGACCCATGTGGAGCCAGACCCAACCGTCACAACTGGGCTAAGATGCAGTGCAGCATCATCACAGGAAAGACTTTCCAACTGTGTCACAAGAAGGTAGACCCTAGTCTGTACTTTGAGAACTGTGTGAAAGACTCCTGTGCCTGTGATACTGGCGGAGACTGTGagtgtttctgtacagctgtaGCAGCCTACGCCCAGGCCTGCACCGAAGCTGGAGTCTGTGTTGCATGGAGAACACCAGAAATTTGTCCTGTGTTCTGTGACTACTACAACGATCCAGGTGAATGTGAATGGCATTACAGCCCTTGCCACACACCTTGCTTCAAGACCTGTCTGAATCTAAATGGGACCTGTGACAACCCTCTTCCCAATCTGGAAGGTTGTTACCCACAATGCCCTCCAGATAGGCCAATATTTGATGAAGAGACCGGGGAGTGTGTTGAGGAATGCCCAACAACAGGCCCATCAACAACAACCCCCCAGACAACCacaccaacaccaccaacaacaccgTGGACACCAACAACTACCACATTGACAACAGAacctccaacaacaacaccaatgccaccaacaacaacacaaacaccaccaacaaccacaccaccaccaacaacaacaacaccaatgccaccaacaacaacaaccacaccaaagccaacaacaaccacaccaataccaccaacaacaacaacaccaataccaacaacaacatctccaataccaccaacaacaacaacacaaataccaacaacaaccacacatacaccaacaacaacaacaccattaccaccaacaacaaccacaacaataccaacaacaacaacaataccaccaacaacaacaccaccaacaacaacaaccacaccaataccaacaacaacaacaacaccaataccaacaacaacaacaacaacaacaacaccaacaacaaccacaccaataccaacaacaacaacaacaccaataccaacaacaacaacaaccacaacaataccaacaacaacaacaccaacaacaacaacaacaaccacaccaataCCACAAACACCAACAACCACACCAATtccaccaacaacaaccacaccaataccaccaacaactACCCCCCAGACACCAGAGCCAACAACTACTCCTTGTATTCCTACCTGTGAGTGGTCAGAATGgtatgatgaagatgatgataaaGATAAGAGTGACTGGGAAACGTATTGGAATATCACGCAGAGTGGAAAAGAAGTGTGTAAAGATCCACAGGATATTGAATGTGTCGCTACAGACTATCCAAATACAAGCTTAGAGGACTATGTAGCTTCGACAGGCCAAGTTGTGGAGTGCGATGTTGACTTCGGGTTAATATGTGAAGAAAATAAACAAACTCAGAGACCATTTAAGTGCTTTAACTATAAGATTAGAGTCCTCTGTTGCGTTGAATGTTTATCAACAACATCACCAAAACCAACAACAACactaacatcaacaacaataacaagaGCACCGTCACCACCAACAACTACCACACCAACgccaccaacaacaaccacaccaatacaaccatcaacaacaccaataccaacaacaacaacaacaacaacaccaacaaccacaccaataacaacaacaacaaccacaccaattccaccaacaacaacaacaccaatactaccaacaccatcaacaacaccaataccaccaacaacaacaacaccaataccaccaacaacaacaccaatagcaacatcaacaacaccaacaataacaaccacaccaccaacaccatcaacaacaacaacatcatcaacaacaacaacaccaccaacaccatcaacaacaacaacaacaccaccaacaccatcaacaacaacaacaacaccaacaataaCAACCACACcagtaccaacaacaacaacaacaccaataccacaaacaccatcaacaacaccaataccaacaacaacaacaacaccaataccaccaacaacaacaccaacaacaacaccaccaacaacaaccacaccaataccaccaacaacaaccacaccaataccaccaccaacaacaacaccaataccaccaacaacaaccacaccaataccaccaacaccatcaacaacaccaataccaacaacaacaacaacaccaataccaccaacaacaacaccaacaacaacaccaccaacaacaacaacaccaataccaccaacaacaacaacaacaacaccaataccaccaacaacaacaacaccaatatcaacatcaacaacaccaccaccaacaacaacaacaacaccaacaccatcaacatcaccaacaacaacaccaacaacaacaaccacaccaataccaccaacaacaacaacaccaataccaccaacaccatcaacaacaccaataccaataacaacaccaataccaccaacaacaacaccaacaacaacaaccacaacaccaccaacaaccacaccaccaccaacaacaacaacaacaccaccaactaCCACACCAttaccaccaacaacaaccacacctaAACCACCAACTACAACGGAAGCCATAACTCTAACCACAACCCCAACGACAACAGAAGAATTAACCACAACCCCCAGGACAACTGAAAAACCAACCACAACCCCAACGACAACAGAAGAACCAACCACAACCCCAACGACAACAGAAGAATCAACCACAACCCCCAGGACAACTGAAAAACCAACCACAACCACCCCTGTCATAGACACCACAACCACTAAAGCTCCTACAACAACACCTAAACCACCAACTACAACAGAAGCCACAACTCCAATGACAACCACATCACCAACAACCCATGAATCGGTTGTCACTGGTCCTCCAATAACTGTTCCGACACCAGGAAATGTTGTCAGTTCAATACCAACCACAACTGGGTCACCAACCCCTCCACCAATCACTTGTCCTGAGTGGGACAAAGTGCAAAATGAAACTTTCTGGCTCTGCAACTGCACTTTGGCCAGATGCATTGAAAACAACACCATTGAGATAATTCCGTATGAATGCCCAAAGCCTGAGCCAATCACATGTACCAATGGCAAGAAACCAGTGCTACAATGGGATGAGTTCTACTGCTGCCAACGatttgtgtgtgactGCGTCTGTGAGGGTTGGGGAGACCCCCATTACATCACCTTCGACGGGCTCTTCTACAGCTTCCAAGGGAACTGTACCTATGTGCTGATGGAGGAGATGTTGCCGCGTCACCACTTCAAGATCTACATCGACAATGTCAACTGTGATCCCACCGAGGACGTGTCTTGTCCTCGATCCATCATCGTGTCCTACCGCTCAACAGTTATAACACTGAAGAATCACAACCTCATTGGAGCTGCTCAGTTGGAGGCTCTTATTGATGGAGTTTCCCTGAGACTACCCTTCACGCGGCACGGTGTGAAGGTGATGAACTCTGGTATCAACATGGTCTTGGAGATAGCACACCTCCAGGTGGTAGTTACCTTTGGAGTCACTGGCTTCAGCGTCAACCTTCCTTGGCAACACTTTGGCAACAATACACAGGGTCATTGTGGAACATGTAGCAACAACAAGGCTGATGACTGCATGTTGCCTGGAGGACAGCTGGTGGAGAACTGTGCTGTGATGGCAGACTACTGGCCAGCCAAGGACCTCTACCAACCTGAATGCCATGTGCCACCTGGAATCCCCACCAACTCTCCTCTCCCTGAACCCACACAGAAGCCATGCAAGCCAGACTCCTCTGTCTGTGATCTCCTGAAAGACAGCATGTTTGCAGCCTGTCATCCATTTGTCTCACCTGACAACTTCTACAAGGGCTGTGTCTATGACAGCTGCCACGTGTCCAACCCAGCGGTGGAGTGCACCAGTCTGCAGACATACGCTGCTGCCTGTGCCCAGTTTGGAGTATGCATCTACTGGAGAAACCACACCGAGCTCTGTGCCAGCGACTGTCCGGCTGACAAAGTCTACAAGCCCTGCGGTCCTGCAGAACAGCCAACCTGTGATGACAATCCAGACGAGTCTAGGATGAACTTCACCACAGAAGGCTGCTTCTGTCCTGATGGGATGAAACTCTTCAACAAGGACTCAGGGATCTGTGTTGATAAGTGTGGATGCATTGACCCTGAAGGAGTTCCACGAGAGTTCAACGAGAGGTTTGAGTACAAGTGCCAGGACTGCATTTGTTTGGAGTCCACCAAGACTGTGAACTGTAAACCCAAGGTCTGCTCCAAACCACCAATAGATATATGCACTGGACCAGGCTTTGTATATGTCAACCAAACCGATCCATCCGATCCATGCTGCTCCAACCTCGCCTGCCGTTGTGACAGCAGCACTTGCCCACCTACCAACATGAACTGTCCTATTGGGTTCGTGCCAGTGGTTTCAGTCCCTGAGGGAAAATGCTGTCCAGAGCACACATGTGAGCCTAAAAGAGTTTGTCTTCACAAAGGCGTTGAATACCTGCCCAATTCTAAAGTACCGGGATCAGAGTGCCAGGAGTGCACCTGCACCAACAAAGTGGACCCCAAGTCTGGTCATTACCAAATTGACTGTGGATTCATGCAATGTGACGAAGATTGTGAAAAGGGATATGAGTACCAGGAGCCGGGCTACAGCTCAGATGACTGCTGTGGTAAATGTGTTCAGACCCACTGTGTCCTCCAGATCAATGGGACCATGCAGTTGTTGAAGcATGGAGATACATGGTCTGCTCCTGGTGACAAGTGCCAGCAGTACAGCTGTGTGAAAAACGGTGATAGTTATCTGACCCAGAGCTCCAACATCCAATGCCCACCCTTCCAGCAGGCCAACTGCCAGCCTGGTTCAATTCAGACCGCTGCAAACGGCTGCTGTAGAATTTGTGTGGAGAAGGACAAGGCCTGTAAGGTAGGATCCATGAAGAGTTTCATCAACCacaagagctgccagtctgttgAGGAGGTGGAGATGCCGTACTGTGAGGGATCCTGCAACACCTTCACCAAGTACTCTGCCATGGCTGCGTCTCTGGACCACTCGTGTGCCTGTTGCCAGGAGTCCCGGTCCAGTAACCGCACGGTGGACCTACGGTGTCTGAATGGAGATGTGGTGCCCTACACCTACCTACACGTGGAGGAGTGTAGCTGCAGACACAGCGACTGCAACAGAGCCATTAGGGTGCCTGCCCGCAGGACACGCAGCAACACGCTGGTGTAAATGGGATCTGTACTAATACAGATGGAAATGGTCCAGCACCAATCCACTCGCTGCTTACTAAGGAACACCCTGCTACCCTGCTTCACATGGCTGTTATTTATCTAATCGCTTTGATTTATATGTCAAATGTAGATTAAATCATATTTAAAATGTAGAAACTTATGCTTACTTATCTTATTAAAATGCAACCTTCCAAT

Function

NR:

description
mucin-2-like, partial

GO: NA

KEGG:

id description
K10955 MUC2; mucin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968563.1 True 8573 mRNA 0.49 45 5150620 5187550

Neighbor

gene id symbol gene type direction distance location
gtf2h1 LOC106584761 coding downstream 5731 5123501 ~ 5144889 (-)
hps5 hps5 coding downstream 28536 5071948 ~ 5122084 (-)
epx LOC106584777 coding downstream 83430 5039217 ~ 5067190 (-)
pidd1 pidd1 coding downstream 305298 4801210 ~ 4845322 (-)
LOC110521172 LOC106584780 coding downstream 360371 4735169 ~ 4790249 (-)
kcnc1b LOC106584763 coding upstream 156390 5343940 ~ 5415904 (-)
LOC118945784 NA coding upstream 160416 5347966 ~ 5350211 (-)
LOC110521187 LOC106584768 coding upstream 370831 5557683 ~ 5599839 (-)
fancf fancf coding upstream 575290 5762840 ~ 5764816 (-)
LOC110521193 NA coding upstream 628188 5815738 ~ 5818923 (-)
G2193978 NA non-coding downstream 19907 5130249 ~ 5130713 (-)
G2193970 NA non-coding downstream 47313 5102735 ~ 5103307 (-)
G2193969 NA non-coding downstream 47912 5100724 ~ 5102708 (-)
G2193953 NA non-coding downstream 117145 5032543 ~ 5033475 (-)
G2193988 NA non-coding upstream 3542 5191092 ~ 5191733 (-)
G2193989 NA non-coding upstream 5758 5193308 ~ 5195230 (-)
G2193999 NA non-coding upstream 28186 5215736 ~ 5217519 (-)
G2193836 NA non-coding upstream 42326 5229876 ~ 5236009 (-)
G2193834 LOC106597596 non-coding upstream 56541 5244091 ~ 5246294 (-)
G2193850 NA other downstream 356397 4793377 ~ 4795447 (-)
G2193810 NA other downstream 417759 4731727 ~ 4732861 (-)
G2193451 NA other downstream 465654 4681737 ~ 4684966 (-)
G2193421 NA other downstream 539153 4610762 ~ 4611467 (-)
G2193227 fd6d other downstream 887421 4190064 ~ 4263199 (-)
LOC110521194 svip other upstream 643751 5825537 ~ 5836399 (-)
LOC110522707 myo5c other upstream 1021312 6206342 ~ 6221642 (-)
G2194918 NA other upstream 1038796 6226346 ~ 6294511 (-)
G2195405 NA other upstream 1447780 6635330 ~ 6635951 (-)
G2195750 NA other upstream 2059184 7225447 ~ 7270413 (-)

Expression


Co-expression Network