LOC118945784


Basic Information

Item Value
gene id LOC118945784
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 5347966 ~ 5350211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040890.1
ctctactgctctctcctctctctattgctctcttctctctctactgctctcccctctctctactgctctcttctctctctactgctctcccctctctctactgctctctcctctcttttggTTTTACTCTTGCCCTTACTCCCGCGTTCCTTTTTTGCTTtccttttttctgttttttttcccccatctCCAGTTTATCTCCAAATTGAAATAATGGTACAACTGCTCCCAAGACAAGGTCTTAGCATGGGAGTCTCAGCTGCTCCCAAGACAAGGTCTTAGCACAGGAGTCTCAGCAGCTCCCAAGACAAGGTCTTAGCATTGGAGTCTCAGCTGCTCCCAAGACAAGGTCTTAGCATGGGAGTCTCAGCTGCTCCCAAGACAAGGTCTTAGCATGGGAGTCTCAGCTGCTCCAGTACATTGTCACACGAGCCTCTTTGCATGGATTGCCTAGTTCAGAGGCAGAGATAGCTCCAGTAAAGCATTGTTGATATACTAGTCTGTTATGTGATTCTACAGGATATTATCCCCTATTGTCTATTTGTTCTACCTTTCTATCATTGCCTGTTGCTCTGTTGTTTTTGATTTCTCATACTTTTTTCGTTCTATATTAACAACTTTCTCATCTGCTTTTTTATAACAAAACTTGTGAAATAAAGACAATTTCATAAGATGTATTTAACCCCTGCTTTAAAATGTTTATGATGCTGAAGCTATGGTTTTACTTATTGGGAGCGAACAGCTGCCTGCtgttgtcccaaatgacaccctattccctacatagtgcactactggcaccctattccctacatagtgcactactttagaccacagaccctatgggccctggtcaaatgttgtgcactttatagggaatagggtgccatttgggacgcaggggGTTGTTGAGTATCTCCCATTAAGTATTTCCTTGTTGCAAAGTGAAGAATTCTGAATACAGGATGTGTATGATGAGACAAAGACTTTATATATCTGAGAGTGGCAGTATAGATTTCACATCTGGAATGAGTAGAGATCTGATGATGATTCTAGAATGATGATGATTCTAGAATGATGAAGAGATTTAGAATGAGGATGATTCTAGAATGAGCAAGAGATTTAGAATGATGATGATTCTAGAATGAGCAAGAGATTTAGAATGATGATGATTCTAGAATGATGAAGAGATCTAGAATGATGATGATTCTAGAATGATGAAGAGATCTAGAATGATGATGATTCTAGAATGATGATGATTCTAGAATGATGATGATTCTAGAATGATGATGATTCTAGAATGACCATTTTTTCTGAGACTAGTGATGATGATACGTTTTTGTCAACAGAAACTAAACTTTGGTTTCATTTGCATGTGTTGCATGAGATTATGTTCAACGAGAAGCTAACTGTGTCACACGTGAGAAAAACATGTTGCGTTCTTTAAAAAGCTTCTCCTTCCGTTTATTATGCACATTCTGAAGCAGCTTATTCTATAGCAAGAGACTCATAGCAGAACTATTCATGTAGCTGCCATGTTTTGCCTTTCCcaaattcatgtattgtttactTACTGTGTGGTTTTAGGAAATCATTTTTTATATAGGAACCTACTTTCAAAAGAGTAACACTTGACTTAATATACCAGACTTCATTAAGATTTACTAGTGAGATAATATGAACTGTTTTGCAGTTTAACAATACATAATGATACATGACATGATGATATATCGTTTACACCTGTACTTAGGCAGTAAAACATAGAGAAAAAGCACTTTATCAAGTCTCGAGTTGACTTATTTATCAGACAAATTAAATCCTAATAAAATATATATCCTGCTTTATTTGGGCAAGGTTTTCCATTTCCTTTTGTCTGATCATGTCTCTTCTTCTGTGGTGGTGCTTGATGTTAACTGTTAAAACCCTTTGTGAAGATTAAATATCAAAAGAGATACAGGTGGAACTATATGTTCGTACGTAATGCAATTATATAAgggtccagtacagtacagtacagtatgttttttttttgggggggggggagcatgTATTTTACATTATGCAAAAGAAAAGTATTCAAATACaaaatgtaaatacaaataaatcatTGCATGAAATAAATTTTGTAATACAACAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040890.1 True 2135 mRNA 0.37 2 5347966 5350211

Neighbor

gene id symbol gene type direction distance location
muc2.1 LOC106593352 coding downstream 160416 5150620 ~ 5187550 (-)
gtf2h1 LOC106584761 coding downstream 203077 5123501 ~ 5144889 (-)
hps5 hps5 coding downstream 225882 5071948 ~ 5122084 (-)
epx LOC106584777 coding downstream 280776 5039217 ~ 5067190 (-)
pidd1 pidd1 coding downstream 502644 4801210 ~ 4845322 (-)
LOC110521187 LOC106584768 coding upstream 208170 5557683 ~ 5599839 (-)
fancf fancf coding upstream 412629 5762840 ~ 5764816 (-)
LOC110521193 NA coding upstream 465527 5815738 ~ 5818923 (-)
LOC118945919 NA coding upstream 466844 5817055 ~ 5817143 (-)
LOC118945916 NA coding upstream 467271 5817482 ~ 5817551 (-)
G2194018 NA non-coding downstream 4892 5340860 ~ 5343074 (-)
G2194060 NA non-coding downstream 8277 5339464 ~ 5339689 (-)
G2194051 NA non-coding downstream 30034 5317579 ~ 5317932 (-)
G2194050 NA non-coding downstream 30426 5315780 ~ 5317540 (-)
G2194049 NA non-coding downstream 32216 5315513 ~ 5315750 (-)
G2194068 NA non-coding upstream 9559 5359770 ~ 5454533 (-)
G2194071 NA non-coding upstream 12086 5362297 ~ 5364047 (-)
G2194074 NA non-coding upstream 21983 5372194 ~ 5372780 (-)
G2194079 NA non-coding upstream 30754 5380965 ~ 5385841 (-)
G2194087 NA non-coding upstream 46156 5396367 ~ 5404388 (-)
G2193850 NA other downstream 553743 4793377 ~ 4795447 (-)
G2193810 NA other downstream 615105 4731727 ~ 4732861 (-)
G2193451 NA other downstream 663000 4681737 ~ 4684966 (-)
G2193421 NA other downstream 736499 4610762 ~ 4611467 (-)
G2193227 fd6d other downstream 1084767 4190064 ~ 4263199 (-)
LOC110521194 svip other upstream 481090 5825537 ~ 5836399 (-)
LOC110522707 myo5c other upstream 858651 6206342 ~ 6221642 (-)
G2194918 NA other upstream 876135 6226346 ~ 6294511 (-)
G2195405 NA other upstream 1285119 6635330 ~ 6635951 (-)
G2195750 NA other upstream 1896523 7225447 ~ 7270413 (-)

Expression


Co-expression Network