LOC110521187 (LOC106584768)


Basic Information

Item Value
gene id LOC110521187
gene name LOC106584768
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 5557683 ~ 5599839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969251.1
TAAAACCACCTAGTGACATCACTGTGCAACAGGTAAAGTCGCTTTTACATTCCTGAGCCTGAGAAACGAACACGGTGTTTGAGTTTCTTGGGAAAGTACGGAAGAAGTGGTTTGACAGGTGCACCGAATGCTATTTTTGTTACGTGCAAATGTtgaattaaaaaaaagaaaaaataagaATCGTCCTTTGAGCGCGCGGTGTGGTTTGGTCGTTGGACGCCTAAAGAGGAGAGCTCTCTGTTTGTATTGAAAACCTATTCAGCTGTCATGTCGCGGCACAGGAGACAGGCCAGCATCGAACTCCTGGAGCTGATGGGAGTGGTGAAGGAAAATGGGAACCATTTTGATAGTCCTGAGACATCACCACTACTTCCCTCAGTGCATACTCCACTGTCATACGACTATGTCCTGGTCGCTAAGACAGTGGATGATCCGGAGAAAGATACCTTCAAGATGCAAGAGGCCTTTATCGAGAAACTAAAGATGAAGAACTTGAAGATAACAAAAATCATAGACGACACTGTTGTCTTCTACGGTATCCAAGCTCCAAATGAAGTGTTTGAGAAGTACAGGTATCTACTGAAGGTGTCTGATGCCTGCAACTGGAGTGAACAGCAGGGAAGTGTCCCTCTTTCCACCAGGATCCGCATTGTTCACTTTATCCTGAGTCATGTCTTCCTGAATACAGGAGAGAACCTGTTTGAACTCTTGAAAAAGAAAGTGTTTGAAGCAAAGTTCTGCCTGCATGAGAGAAAAACTCAGAAGGAACTGAGGAAAAGTTGGGCCAGATGGACTGCCTGTTTCCGGGGACAACCAATCAATGATGTCAGGAACTACTTTGGAGAGAAGGTGGCTCTGTATTACCTCTGGCTGGGCTGGTACACCCTTCTGTTGCTCCCTGCAGCTCTGTTAGGGGTCATTGTCTTCCTCTACGCGCTGGCTTTCTACAAGACCTCGCCACttatAAAGGAGGTGTGTGAGTCGAACACAATCATGTGTCCTCTGTGTGACAAGAGATGCAAAGTGTGGCTACTCAGCGATACCTGCCTTTACGCCAAGGTCAGCATCCTATTTGACAACGAGGGGACGGTTATGTTTGCTATGTTCATGGCAGTATGGACCACCTTGTTCCTGGAGTTCTGGAAACGACACAGAGCCTCCTATACATGTGAATGGAAGGTGTTCGACTGGTGTGAGGAGGAGGAGGAGCTGATCCTGGACATAGTGAACGATGCAGAATGTGCGCCTAAGGAACACAAGCACTCCTACCTACGCAGCACCCTGGTCCTCATCCTGGTCACTCTTATACTGCTGCTGATCATCGGCCTGGCCCATGCCCTGGTGGTGTTCCGGGTGGTTGCCACTGTGATGTTGGCTGAAGGATCATGGGAGTTCCTGAGTGACCACTCCAACACGGCCGCTGTGATACTAGGAGCAGTGCTACACTacttcaccatcaccatcatgacACGGGTCAACAGGATTGTGTCGCTGAAACTCTGCGACATCGAGGAGAATCAGTCGTTTGCTGCCTCTGAGAGAAGCTTCACCGTCAAGATGTTTACCTTCCAGTtcttcaccctcttctcctctctcttctacgtTGCCTTCTTCCTGGGCAGGATAAATGGACACCCAGGTGGCTACGTGCGGATAGCAGGGAAGTGGAGGTTGGAGGAGTGCCACCCCAGTGGCTGCCTCACAGACCTTTTCATCCAGATGGCCATCATTATGGTTCTGAAACAAACCATCAGCAACGTCTTTGAGTTCGGAGGCCCCTGGTTCAACAGGTGGCTAAAGAGGCGGAGGACTAAGAAGCTACAGAGGAAGTGTCCCCACTGCTACAAGAAGGCAGACCAACAGACCAATCGGTGGGAAGAGCTGTGTGAGATCTGCAAGCTCAGTGATTGGCTAAGAAACTACCGTCTCAACGACGTGAACTCTTTCAGCCTCTTCAATGAGTTCCTGGAGATGGTCCTCCAGTTCAGTTTCACCACCATCTTTGTGGCTGCGTTCCCCTTGGCTCCCCTGCTGGCCTTAATCAACAACATCATAGAGATACGGCTCGACGCCATCAAGATGGTCAGTTTGGAGCGCAGGATGGTACCCAAGAAGACCAACGACATCGGCGTATGGACAGATGTGTTGGAGGCTATCGGGGTGTTGGCAGTCATCGCCAACGGCCTGGTTATTGGGATATCTTCAGACTTCATCCCTCGCCTTGTATACCGCTACAGTTATGGACCGTGTGCCAATGGAACGGTCACGGACACGGATTGCATGGCCGGCTACATCAACAACAGCCTGTCCACAGTGTACATGAACGACCAGAGAATCTATAATGAGTTCTCACCGGACCAGATGGTGACGCCTAGCGGACAGAATGTCTCCTACTGCAGTTATAAAGATTATAGAAGTAATGAAGACTACAGCTTGACTCCTCAGTTCTGGCTCATTTTAGCTGTGCGCTTTGCTTTTGTCATCCTCTTTGAGCACGTGGTGGTCATATGTAAATTCATCACAGCCTGGTTTGTTCCCAGCGTTCCCTTGGATGTCAAGAATCAAAGGCTCTTTGATAAACTCAACAGGTTGAAGGAAGAGCTCAGCTCATCGGAGGTATGACAACATCGCCACAGTGTTTGGAGAATTCTAATGTTGACATAGTGATGTCTGAAAAAACACATTGGACACGGTATCCGCTCAGATGTGACTGATTATCGGCACTGTTGGAGGACATGTTcgtgtgtggagagggagagggagggggagagggagagagagagagagagagggagggagagggagcgctTATCGCCTGGGTTTTATTGGTTTtctatttgttgtttttttgtttttttgtgtcagATGACGTCAGAGTGCTGGCCATGTGACCTCTGACCCTAGATATAGTTATTGTTTCTTATAAGagagaaaaatataaaatattgtcTAAATGGTAACAGACAACACTTCTAGatgttatatatatttattttatatttcatGAAGTTGCACTATTTTTTTGTTTGCCGTTGTTAAATCATCTTGTTTACTGTTCAGTACAGGCAGTACAGGCAGGTCAGGCAGTACAGGCAGTACAGGCAGTACAGGCAGTACAGGCAGGTCAGGCAGTACAGGCAGTACAGGTAGTACAGGTAGTACAGGCAGTACAGGCAGTACAGGCATGCTGTGGCATGGTATGCAACGTAGTGATATGTTATGTTATAGTGAGATACTTATGTTTATCAACTGTGGACAGgaaatgtaatatatttttttaaagcactGAGATGTGCTTCATGTTATGAGACATAACACATTCACTTTAACTTAACGAAAGAGACACCGTTGATATTAATATACGACCGAATGACctacagggtagcctagtggttagagcgttgggccactaACTGAAAGGTTACTAGATCAAATCTCtgagatgacaaggtaaaaaaaaaaactgtaattctgcccctgaacaaggaaccCTCTGTTCCCcgataggctgtcattgtaaatatgaatttgttcttaactgacttgcctagttaaataaaggtaaaataaacatgTTAAATTAAACATCGCTTTGTACCTGGATGGATGGGGGGCCAAGTCATGTTAAGGACTGTAAACTCAGTCACattacttattttttttaatacagtatattcatcaCTTCTGGTCAATGTAACTTGACAATTGTTCTAATTTAAAAACGATGTTCAGACTCGGCGTTCATTACGAGGACTGTTGTAAAAGGTaagcag
>TU2510164
CTGGCCATGTGACCTCTGACCCTAGATATAGTTATTGTTTCTTATAAGagagaaaaatataaaatattgtcTAAATGGTAACAGACAACACTTCTAGatgttatatatatttattttatatttcatGAAGTTGCACTATTTTTTTGTTTGCCGTTGTTAAATCATCTTGTTTACTGTTCAGTACAGGCAGTACAGGCAGTACAGGTAGTACAGGTAGTACAGGCAGTACAGGCAGTACAGGCATGCTGTGGCATGGTATGCAACGTAGTGATATGTTATGTTATAGTGAGATACTTATGTTTATCAACTGTGGACAGgaaatgtaatatatttttttaaagcactGAGATGTGCTTCATGTTATGAGACATAACACATTCACTTTAACTTAACGAAAGAGACACCGTTGATATTAATATACGACCGAATGACctacagggtagcctagtggttagagcgttgggccactaACTGAAAGGTTACTAGATCAAATCTCtgagatgacaaggtaaaaaaaaaaactgtaattctgcccctgaacaaggaaccCTCTGTTCCCcgataggctgtcattgtaaatatgaatttgttcttaactgacttgcctagttaaataaaggtaaaataaacatgTTAAATTAAACATCGCTTTGTACCTGGATGGATGGGGGGCCAAGTCATGTTAAGGACTGTAAACTCAGTCACattacttattttttttaatacagtatattcatcaCTTCTGGTCAATGTAACTTGACAATTGTTCTAATTTAAAAACGATGTTCAGACTCGGCGTTCATTACGAGGACTGTTGTAAAAGGTaagcagataactttcAGAAGTACTGTAGGCTTCCTCAAACAGGTGTCACGAATCTACTGTTGGCTATAGGCCGAATCTACTGATGGTTATAGGCCGAATCTACTGTTAGGGTTAAAGTTTgtttttaaaatcagattttatgactttgtggctgtgctaactagtgaccact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969251.1 False 3773 mRNA 0.46 24 5558381 5599839
TU2510164 True 997 lncRNA 0.36 3 5557683 5559274

Neighbor

gene id symbol gene type direction distance location
kcnc1b LOC106584763 coding downstream 142477 5343940 ~ 5415904 (-)
LOC118945784 NA coding downstream 208170 5347966 ~ 5350211 (-)
muc2.1 LOC106593352 coding downstream 370831 5150620 ~ 5187550 (-)
gtf2h1 LOC106584761 coding downstream 413492 5123501 ~ 5144889 (-)
hps5 hps5 coding downstream 436297 5071948 ~ 5122084 (-)
fancf fancf coding upstream 163001 5762840 ~ 5764816 (-)
LOC110521193 NA coding upstream 215899 5815738 ~ 5818923 (-)
LOC118945919 NA coding upstream 217216 5817055 ~ 5817143 (-)
LOC118945916 NA coding upstream 217643 5817482 ~ 5817551 (-)
LOC118945921 NA coding upstream 218161 5818000 ~ 5818089 (-)
G2194123 NA non-coding downstream 14830 5528250 ~ 5543551 (-)
G2194104 NA non-coding downstream 53715 5454896 ~ 5504666 (-)
G2194124 NA non-coding downstream 56223 5501448 ~ 5502158 (-)
G2194119 NA non-coding downstream 63104 5491238 ~ 5495277 (-)
G2194118 NA non-coding downstream 69757 5487702 ~ 5488624 (-)
G2194171 NA non-coding upstream 2431 5602270 ~ 5602515 (-)
G2194188 NA non-coding upstream 19571 5619410 ~ 5619668 (-)
G2194633 NA non-coding upstream 26832 5626671 ~ 5627050 (-)
G2194642 NA non-coding upstream 40107 5639946 ~ 5703369 (-)
G2194647 NA non-coding upstream 44635 5644474 ~ 5644970 (-)
G2193850 NA other downstream 764158 4793377 ~ 4795447 (-)
G2193810 NA other downstream 825520 4731727 ~ 4732861 (-)
G2193451 NA other downstream 873415 4681737 ~ 4684966 (-)
G2193421 NA other downstream 946914 4610762 ~ 4611467 (-)
G2193227 fd6d other downstream 1295182 4190064 ~ 4263199 (-)
LOC110521194 svip other upstream 231462 5825537 ~ 5836399 (-)
LOC110522707 myo5c other upstream 609023 6206342 ~ 6221642 (-)
G2194918 NA other upstream 626507 6226346 ~ 6294511 (-)
G2195405 NA other upstream 1035491 6635330 ~ 6635951 (-)
G2195750 NA other upstream 1646895 7225447 ~ 7270413 (-)
G2194153 NA non-coding upstream 2540 5561814 ~ 5563791 (-)

Expression


Co-expression Network