LOC110522707 (myo5c)


Basic Information

Item Value
gene id LOC110522707
gene name myo5c
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 6206342 ~ 6221642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968567.1
ATGCGTTACCATGGCTTTGTCGGAACTCTATACGAAGaaatacaaattcaTGCATTCATTAATTTGCTCCTTCAGTACAACAGAGTGTGGATACCGGATGCAGAGCATGTCTGGAAGTCAGCAGAGATACTGAGAGACTTCAAACCTGGAGATGAGGCTTTAGAACTGCAGCTTGACGATGGCACTGAGATGGTGTACCCCCTGGACAAATCCAGTCCTCAGCTCCCTCACCTCCGCAACCCGGATATCCTGGTGGGAGAGAATGATCTGACAGCTCTCAGCTATCTCCACGAGCCTGCCGTACTACACAATCTCAAAGTGCGCTTCGTGGAGTCCAACATTATCTACAGCTACTGTGGAATCATCCTGGTGGCTGTTAACCCATACAAGCAGCTTCACATCTATGGAGATGCAGTCATTCAGGCGTACTCTGGACAGAAGATGGGAGCTATGGATCCTCACATATTCGCTGTGGCAGAGGAGGCTTACAAACAGATGGCCAGGAACAATAAGAACCAGTCTGTTATAGTGAGTGGTGAGTCTGGAGCCGACAAGACCGTGTCTGCTAGGTATGTCATGAGGTACATCGCTATGGTCAGCAAGTCTAGCAGCAAAACACACGTGGAAGACAAAGTTCTGGCATCCAACCCAATAACTGAGgcTATTGGAAATGCCAAGACGGCCAGGAACGACAACAGCAGTCGCTTTGGGAAGTACACAGAGATCAGCTTCGACAGGAGATATCAGATCATCGGTGCCAACATGAGGACGTATCTCATGGAGAAATCTAGAGTGGTTTCCCAGTCAGAGAACGAGAGAAACTACCATATCTTCTACCAGATGTGTGCCTGTGCAGAGCAGTCTGAGTTCAAGAGCCTGAGATTGTTGAGTGCAGATGAGTTCAGGTACACCTGCATGGGCGGGGAGACGGGTATCGAGGGGGTGGACGACAGGAAGGACATGGAAGAGACACGCAGGACCTTCTCGCTGTTGGGGTTAACGGAGGACTTCCAGTCGGATGTGTTCAAGGTGCTGGCTGGGATTCTACACCTGGGGAATGTGGAGATCAGAAACGTTGGATCAGACAGATCATCAGTTAGTtccagTGATCAACACCTAGCTGCTTTCTGTGACCTTCTCGGGGTCAGTCCTGATGGTGTTACCCGTTGGCTGTGCCATCGCAGGATAGCCATGGTGGCAGAGACGGTGGTGAAGCCGGTGCCCAGTGAACGCGCTGTGAACTCCAGAGATGCCCTCGCCAAGCAGATCTATGCCCACCTGTTCGACTGCGTCATCCAGAAGATCAATGCAGCCCTGCAGGTGCCAGGGAAACAGCACTCCTTCATAGGAGTACTGGACATCTATGGGTTTGAAACATTTGATGAACAGTTTTGCATCAACTATGCCAATGAGAAGCTTCAGCAAGAGTTTATGAAACAGAACTCTCCGCGTCAGAAGAAGAACTGCTTGCAGAACTTTGACTTGTCTGAACATAGACAGATCTTCAGTGATCTGGCCATCCGTATCTACCACCAGTTTATATCTGTTATGGAGAAGGCTCTTATGCCTATGATCGTTCCCTGTATGCTGGAGCACGAGAGTCTCCAGGACATCTCTAGTATGAAGCCTACAGGTTTCCGTAAGCGTTCCAGCAGCATCTATGAGGACCAGGAGGTCTGCACCATCTACTCTCTCCTCCAGCAGCTCAGTCTGTACCACAGCACTATGAGTCAGCACGGCATGGAGGAGGGGCTGGTCAGACAGGCTGTGAAACAGACCTTCTTCCTGGTGGGTGCGGACACACTCAACAACCTCCTGCTACGCAAAGACATGTGCTCCTGTAGGAAGGGCATGCAGATCAGgTGTAACATAAGTCACCTGGAGGCGTGGCTAAAGGAGAAGGACCTAGTGCAGGGTACCATGGCTACTCTGAAGCCTCTGTGTCAGGCTGCCTGGCTGCTGCAGGTCAACAAGACCACTGATGACGACATCAAAGACATCACAGAGCAATGCTCAGAACTCAGCCCTGTACAGATTGTCAAGATTTTGAACTCTTACACGCCCACTGATGATTTTGAGAAAAGGGTGGCACCGTTGTTCGTCCGCAAAATTCAGGGCTTGCTCCAAGACCGTGAGGGGGGATCCTCCCAGCTGATGCTGGATACCCAGTATCGTTTCCAAGTAACCTTCCCCTTCACCCTGTCCTCTCAGGCCCTGGAGCTACTGGAGATACCATCCAGCCTCAGACTGGGCTTCCTCACCAGgatctaacctctaacccctgacctctgaccccttcaCCGTGTCCTCTCAGGCCCTGGAGCTACTGGAGATACCATCCAGCCTCAGACTGGACTTCCTCACCAGgatctaacctctaacccctgacctctgaccccttcaCCCTGTCCTCTCAGGCCCTGGAGCTACTGCAGATACCATCCAGCCTCAGACTGGGCTTCCTCACCAGgatctaacccctgacctctgacccattCACCCCGTCCTCTCAGGCCCTGGAGCTACTGGAGATACCATCTAGCCTCAGACTGGGCTTCCTCACCAGGATCTAACCCCTGATCTCTGACCCATTCACCCCGTCCTCTCAGGCCCTGGAGCTACTGCAGATACCATCCTGCCTCAGACTGTGCTTCCTCACCAGgatctaacctctgacccctgactAGAGAAGCGGTCCAGTAACCTAAAGGTGGCTGGTTTTTAATCCCAGTGATGACAGGGGAAAAGCTGTCAGAAGAGGAAGTTGCCGCTTTCTACTAGAGTCTCAGGTGGCTCCGACTGCcattgtgtccttgagcaaggcactcctaaccaatcaatcaatcaatcaatcaatcaaatgtatttatgaagctcttcttacatcagccgatgtcacaaagtgctgtacagaaacccagtctaaaaccacaaacagcaaaagcaatgcagatgtagaagcacattGGCTCCAGGGACGCTGCTCTAAAACCAACCTTTTACAATCATCACAGTAATTATGAATCCAAATAACCAAAGATCCTTTTAAACGAATGCGTGTTTTGATTTACACTTGTCATACAGTTTGATAGAAATATTAAGATGACTCCTGACGAATGTCCGATGTACAGCAAAAATGCAGATGCTGTTGCGGAGTGATTTTTCTACTGCTCGGCAGTATAACGAGAAACCTTACTTTCTCAGTTCAGATGAGATGACGAATGTGAACCGTGTTGCTttttaaaatattgtctgtgtaaATTGAGAATGTGACCACTCAATGTTATTGAGTATCATGcacagtaaataaataaaacatggcttgttttttgtttttaagatACTTTTGGGGGGGGGTTATACCACATATAAGTATTTCATATTTAAATTATAAAAAACATGTGCCTAAAATTAATTATATGAATAAAGTATTTTATTAGTTGATAATGATTCTATTTgtaagggattttttttttttacacaactaCAAATGTATTATACAAGAGCACTTTAGATCTGCAAATGATAcagtaggaccagggttagtccaAACCTCTTTCTGATAcagtaggaccagggttagtccaAACCTCTTTCTGATAcagtaggaccagggttagtccaAACCTCTTTTTGATACAGTAGGACCAGGGTTGGTCCAAACCTCTCTTTGATActgtaggaccagggttagtccaAACCTCTTTTTGATAcagtaggaccagggttagtccaAACCTCTTTTTGATAcagtaggaccagggttagtccaAACCTCTTTTTGATAcagtaggaccagggttagtccaAACCTCTTTTTGATAcagtaggaccagggttagtccaAACCTCTCTTTCTGATAcagtaggaccagggttagtccaAACCTCTTTCTGATACAGTAGGTCCAGGGTTAGTCCAAACCTGTCTTTGATAcagtaggaccagggttagtccaAACCTCTTTCTGATACAGTAGGACCAGGGTTGGTCCAAACCTCTTTCTGATACAGTAGGACCATGGTTAGTCCAAACCTCTCTTTGATAcagtaggaccagggttagtccaAACGTCTCTTTGATAcagtaggaccagggttagtccaAACCTCTTTGATACAGTAGGACCAGTGTTAGTCCAAACCTCTCTTTGATAcag
>TU2511205
GGCTTGCTCCAAGACCGTGAGGGGGGATCCTCCCAGCTGATGCTGGATACCCAGTATCGTTTCCAAGTAACCTTCCCCTTCACCCTGTCCTCTCAGGCCCTGGAGCTACTGGAGATACCATCCAGCCTCAGACTGGGCTTCCTCACCAGgatctaacctctaacccctgacctctgaccccttcaCCGTGTCCTCTCAGGCCCTGGAGCTACTGGAGATACCATCCAGCCTCAGACTGGACTTCCTCACCAGgatctaacctctaacccctgacctctgaccccttcaCCCTGTCCTCTCAGGCCCTGGAGCTACTGCAGATACCATCCAGCCTCAGACTGGGCTTCCTCACCAGgatctaacccctgacctctgacccattCACCCCGTCCTCTCAGGCCCTGGAGCTACTGGAGATACCATCTAGCCTCAGACTGGGCTTCCTCACCAGGATCTAACCCCTGATCTCTGACCCATTCACCCCGTCCTCTCAGGCCCTGGAGCTACTGCAGATACCATCCTGCCTCAGACTGTGCTTCCTCACCAGgatctaacctctgacccctgactAGAGAAGCGGTCCAGTAACCTAAAGGTGGCTGGTTTTTAATCCCAGTGATGACAGGGGAAAAGCTGTCAGAAGAGGAAGTTGCCGCTTTCTACTAGAGTCTCAGGTGGCTCCGACTGCcattgtgtccttgagcaaggcactcctaaccaatcaa
>TU2511206
aaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctttaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgtgttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaaaaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacattttgcattgttgccaaaaagttcaaatttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttcaccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgctttcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacatcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagttttaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcacaaagttcaagggggccgaatactttcgcaaggcactgtaaatatatacCTTCTTCTTCTCCATCTTCCCATTCTGTAACTGATGTTATTTATTCTTTGTACATTCTGTCGTAGGAGTTTATGAAACAGAACTCTCCGCGTCAGAAGAAGAACTGCTTGCAGAACTTTGACTTGTCTGAACATAGACAGATCTTCAGTGATCTGGCCATCCGTATCTACCACCAGTTTATATCTGTTATGGAGAAGGCTCTTATGCCTATGATCGTTCCCTGTATGCTGGAGCACGAGAGTCTCCAGGACATCTCTAGTATGAAGCCTACAGGTTTCCGTAAGCGTTCCAGCAGCATCTATGAGGACCAGGAGGTCTGCACCATCTACTCTCTCCTCCAGCAGCTCAGTCTGTACCACAGCACTATGAGTCAGCACGGCATGGAGGAGGGGCTGGTCAGACAGGCTGTGAAACAGACCTTCTTCCTGGTGGGTGCGGACACACTCAACAACCTCCTGCTACGCAAAGACATGTGCTCCTGTAGGAAGGGCATGCAGATCAGgTGTAACATAAGTCACCTGGAGGCGTGGCTAAAGGAGAAGGACCTAGTGCAGGGTACCATGGCTACTCTGAAGCCTCTGTGTCAGGCTGCCTGGCTGCTGCAGGTCAACAAGACCACTGATGACGACATCAAA
>TU2511207
taacaacatgtttcagttacctgtctgtgtgttaggtaacataacaacatgtttcagttacctgtctgtgtgttaggtaacataacaacatgtttcagttacctgtctgtgtgttaggtaactgaaacatgttgttatgttacctaacacacagacaggtaaCTGAAACATGTTATGTTAcctaacacacagacaggtaactgaaacatgttgttatgttacctgtctgtgtgttaggtaacataacaacatgtttcagttacctgtctgtgtgttaggtaacataacaacatgtttcagttacctgtctgtgtgttaggtaacataacaacatgtttcagttacctgtctgtgtgttaggtaacgtaacaacatgtgtcCAGGTGTAACATCAGTtacctgtctgtgtttttcaggTGTAACATAAGTCACCTGGAGGCGTGGCTAAAGGAGAAGGACCTAGTGCAGGGTACCATGGCTACTCTGAAGCCTCTGTGTCAGGCTGCCTGGCTGCTGCAGGTCAACAAGACCACTGATGACGACATCAAA
>TU2511210
TGTCCGTTCTTTTTGGCTATTTTTTCCCCTCTCAGGTTTGAAACATTTGACATGAACAGTTTTGCATCAACTATGCCAATGAGAAGCTTCAGCAACAATCCAACTAGGTATGTAACCTCACCAAGTCCAAGTCCAACTTGGTATGTAACATCACCAAGTCCAAGTCCAACTAGGTATGTAACCTCACCAAGTCCAACTAGGTATGTAACCTCACCAAGTCCAAGTCCAACTAGGTATGTAACCTAAACAAGTCCAAGTCCaactaggtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggc
>TU2511211
TGTCCGTTCTTTTTGGCTATTTTTTCCCCTCTCAGGTTTGAAACATTTGACATGAACAGTTTTGCATCAACTATGCCAATGAGAAGCTTCAGCAACAATCCAACTAGGTATGTAACCTCACCAAGTCCAACTAGGTATGTAACCTCACCAAGTCCCACTAGGTATGTAACCTCACCAAGTCCAAGTCCAACTAGGTATGTAACCTAAACAAGTCCAAGTCCaactaggtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggc
>TU2511212
GGAAGGACATGGAAGAGACACGCAGGACCTTCTCGCTGTTGGGGTTAACGGAGGACTTCCAGTCGGATGTGTTCAAGGTGCTGGCTGGGATTCTACACCTGGGGAATGTGGAGATCAGAAACGTTGGATCAGACAGATCATCAGTTAGTtccagTGATCAACACCTAGCTGCTTTCTGTGACCTTCTCGGGGTCAGTCCTGATGGTGTTACCCGTTGGCTGTGCCATCGCAGGATAGCCATGGTGGCAGAGACGGTGGTGAAGCCGGTGCCCAGTGAACGCGCTGTGAACTCCAGAGATGCCCTCGCCAAGCAGATCTATGCCCACCTGTTCGACTGCG

Function

symbol description
myo5c Predicted to enable actin filament binding activity and microfilament motor activity. Predicted to be involved in actin filament organization and vesicle transport along actin filament. Predicted to be part of myosin complex. Predicted to be active in actin cytoskeleton; cytoplasm; and vesicle. Is expressed in intestine. Orthologous to human MYO5C (myosin VC).

NR:

description
PREDICTED: unconventional myosin-Vc

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968567.1 False 4160 mRNA 0.48 18 6206342 6221642
TU2511205 False 725 lncRNA 0.56 1 6207662 6208386
TU2511206 False 2069 TUCP 0.44 4 6208862 6213028
TU2511207 False 549 lncRNA 0.41 3 6208862 6209894
TU2511210 False 330 lncRNA 0.44 2 6213166 6213549
TU2511211 False 291 lncRNA 0.44 3 6213166 6213549
TU2511212 True 339 TUCP 0.55 3 6213738 6215353

Neighbor

gene id symbol gene type direction distance location
gnb5a LOC106584742 coding downstream 1704 6197425 ~ 6204638 (-)
ap4e1 ap4e1 coding downstream 13681 6170649 ~ 6192661 (-)
LOC118945802 NA coding downstream 42201 6163158 ~ 6164141 (-)
fd6d fd6d coding downstream 59755 6134746 ~ 6146587 (-)
LOC110521200 LOC106584747 coding downstream 96786 6076745 ~ 6109556 (-)
LOC110522708 LOC106584740 coding upstream 7781 6229423 ~ 6236710 (-)
LOC110521206 LOC106584738 coding upstream 17979 6239621 ~ 6285310 (-)
LOC110521207 LOC106584737 coding upstream 75591 6297233 ~ 6323060 (-)
LOC118945837 NA coding upstream 214873 6436515 ~ 6436678 (-)
LOC118945848 NA coding upstream 218032 6439674 ~ 6439837 (-)
G2194930 NA non-coding downstream 10163 6195944 ~ 6196179 (-)
G2194929 NA non-coding downstream 10613 6195251 ~ 6195729 (-)
G2194902 NA non-coding downstream 81650 6123184 ~ 6124692 (-)
G2194885 NA non-coding downstream 84378 6121735 ~ 6121964 (-)
G2194899 NA non-coding downstream 88983 6117150 ~ 6117359 (-)
G2194940 NA non-coding upstream 262 6221904 ~ 6222192 (-)
G2194941 NA non-coding upstream 1777 6223419 ~ 6223662 (-)
G2194918 NA non-coding upstream 4704 6226346 ~ 6294511 (-)
G2194955 NA non-coding upstream 37559 6259201 ~ 6260775 (-)
G2194956 NA non-coding upstream 46135 6267777 ~ 6268709 (-)
LOC110521194 svip other downstream 370080 5825537 ~ 5836399 (-)
G2193850 NA other downstream 1412119 4793377 ~ 4795447 (-)
G2193810 NA other downstream 1473481 4731727 ~ 4732861 (-)
G2193451 NA other downstream 1521376 4681737 ~ 4684966 (-)
G2193421 NA other downstream 1594875 4610762 ~ 4611467 (-)
G2195405 NA other upstream 413688 6635330 ~ 6635951 (-)
G2195750 NA other upstream 1025092 7225447 ~ 7270413 (-)
G2195796 NA other upstream 1063551 7285193 ~ 7285671 (-)
G2196731 LOC106584678 other upstream 1871059 8092701 ~ 8093996 (-)

Expression


Co-expression Network