Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110521226 |
| gene name | parp16 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 6947745 ~ 6954514 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| parp16 | Predicted to enable NAD+ ADP-ribosyltransferase activity; kinase binding activity; and protein serine/threonine kinase activator activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and protein ADP-ribosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum tubular network and nuclear envelope. Is expressed in several structures, including liver; median fin fold; presumptive ectoderm; vasculature; and ventral mesoderm. Orthologous to human PARP16 (poly(ADP-ribose) polymerase family member 16). |
| description |
|---|
| PREDICTED: mono [ADP-ribose] polymerase PARP16 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036968679.1 | False | 2148 | mRNA | 0.51 | 7 | 6947745 | 6954514 |
| TU2511946 | True | 857 | lncRNA | 0.50 | 2 | 6947895 | 6950342 |
6,945,000
6,946,000
6,947,000
6,948,000
6,949,000
6,950,000
6,951,000
6,952,000
6,953,000
6,953,000
6,954,000
6,955,000
6,956,000
6,957,000
6,958,000
6,959,000
6,960,000
6,961,000
6,962,000
NC_050570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110521222 | LOC106584722 | coding | downstream | 76361 | 6862281 ~ 6871384 (-) |
| LOC110521221 | LOC106584724 | coding | downstream | 85695 | 6823752 ~ 6862050 (-) |
| zgc:101540 | slc27a2 | coding | downstream | 127532 | 6799889 ~ 6820213 (-) |
| LOC110521217 | LOC106584699 | coding | downstream | 412125 | 6529260 ~ 6535620 (-) |
| fan1 | fan1 | coding | downstream | 444599 | 6489532 ~ 6503146 (-) |
| LOC118945790 | LOC106584702 | coding | upstream | 85375 | 7039889 ~ 7049982 (-) |
| LOC118945775 | LOC106594018 | coding | upstream | 1154018 | 8108532 ~ 8125363 (-) |
| LOC110522722 | LOC106584645 | coding | upstream | 1333292 | 8287806 ~ 8378637 (-) |
| LOC110521246 | LOC106584647 | coding | upstream | 1480683 | 8435197 ~ 8446835 (-) |
| LOC110521247 | LOC106584649 | coding | upstream | 1497804 | 8452318 ~ 8492581 (-) |
| G2195563 | NA | non-coding | downstream | 31327 | 6913257 ~ 6916418 (-) |
| G2195564 | NA | non-coding | downstream | 34560 | 6912837 ~ 6913185 (-) |
| G2195560 | NA | non-coding | downstream | 38703 | 6907802 ~ 6909042 (-) |
| G2195554 | NA | non-coding | downstream | 51263 | 6896271 ~ 6896482 (-) |
| G2195542 | NA | non-coding | downstream | 51617 | 6894538 ~ 6896128 (-) |
| G2195546 | NA | non-coding | upstream | 4782 | 6959296 ~ 6960531 (-) |
| G2195541 | NA | non-coding | upstream | 17677 | 6972191 ~ 6974135 (-) |
| G2195590 | NA | non-coding | upstream | 21229 | 6975743 ~ 6975998 (-) |
| G2195594 | NA | non-coding | upstream | 26499 | 6981013 ~ 6981337 (-) |
| G2195595 | NA | non-coding | upstream | 27824 | 6982338 ~ 6982777 (-) |
| G2195405 | NA | other | downstream | 311794 | 6635330 ~ 6635951 (-) |
| G2194918 | NA | other | downstream | 718531 | 6226346 ~ 6294511 (-) |
| LOC110522707 | myo5c | other | downstream | 732392 | 6206342 ~ 6221642 (-) |
| LOC110521194 | svip | other | downstream | 1111483 | 5825537 ~ 5836399 (-) |
| G2193850 | NA | other | downstream | 2153522 | 4793377 ~ 4795447 (-) |
| G2195750 | NA | other | upstream | 292220 | 7225447 ~ 7270413 (-) |
| G2195796 | NA | other | upstream | 330679 | 7285193 ~ 7285671 (-) |
| G2196731 | LOC106584678 | other | upstream | 1138187 | 8092701 ~ 8093996 (-) |
| G2196733 | LOC106596922 | other | upstream | 1145157 | 8099671 ~ 8107053 (-) |
| G2196747 | NA | other | upstream | 1171889 | 8126403 ~ 8138110 (-) |
