Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110522722 |
| gene name | LOC106584645 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 8287806 ~ 8378637 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036968760.1 | False | 8016 | mRNA | 0.46 | 30 | 8287806 | 8378637 |
| XM_036968761.1 | False | 8004 | mRNA | 0.46 | 29 | 8287806 | 8378637 |
| XM_036968762.1 | False | 6433 | mRNA | 0.50 | 29 | 8289365 | 8378637 |
| XM_036968763.1 | False | 6406 | mRNA | 0.50 | 29 | 8289365 | 8378637 |
| XM_036968764.1 | False | 6370 | mRNA | 0.50 | 28 | 8289365 | 8378637 |
| TU2513582 | False | 365 | lncRNA | 0.37 | 1 | 8287882 | 8288246 |
| TU2513585 | True | 490 | lncRNA | 0.34 | 1 | 8287882 | 8288371 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118945775 | LOC106594018 | coding | downstream | 162443 | 8108532 ~ 8125363 (-) |
| LOC118945790 | LOC106584702 | coding | downstream | 1237824 | 7039889 ~ 7049982 (-) |
| LOC110521226 | parp16 | coding | downstream | 1333292 | 6947745 ~ 6954514 (-) |
| LOC110521222 | LOC106584722 | coding | downstream | 1416422 | 6862281 ~ 6871384 (-) |
| LOC110521221 | LOC106584724 | coding | downstream | 1425756 | 6823752 ~ 6862050 (-) |
| LOC110521246 | LOC106584647 | coding | upstream | 56560 | 8435197 ~ 8446835 (-) |
| LOC110521247 | LOC106584649 | coding | upstream | 73681 | 8452318 ~ 8492581 (-) |
| LOC110521248 | LOC106584650 | coding | upstream | 116198 | 8494835 ~ 8503448 (-) |
| isg20 | LOC106584653 | coding | upstream | 130911 | 8509548 ~ 8514228 (-) |
| LOC101268961 | LOC101268961 | coding | upstream | 140683 | 8519320 ~ 8526505 (-) |
| G2196824 | NA | non-coding | downstream | 3414 | 8284173 ~ 8284392 (-) |
| G2196821 | NA | non-coding | downstream | 6334 | 8281259 ~ 8281472 (-) |
| G2196803 | NA | non-coding | downstream | 22570 | 8227298 ~ 8265236 (-) |
| G2196802 | NA | non-coding | downstream | 25319 | 8259421 ~ 8262487 (-) |
| G2196797 | NA | non-coding | downstream | 68918 | 8218368 ~ 8218888 (-) |
| G2196906 | NA | non-coding | upstream | 33997 | 8412634 ~ 8412977 (-) |
| G2197045 | NA | non-coding | upstream | 209117 | 8587754 ~ 8592010 (-) |
| G2197247 | NA | non-coding | upstream | 319903 | 8698540 ~ 8744360 (-) |
| G2197300 | NA | non-coding | upstream | 326305 | 8704942 ~ 8705545 (-) |
| G2197301 | NA | non-coding | upstream | 328580 | 8707217 ~ 8707448 (-) |
| G2196747 | NA | other | downstream | 149696 | 8126403 ~ 8138110 (-) |
| G2196733 | LOC106596922 | other | downstream | 180753 | 8099671 ~ 8107053 (-) |
| G2196731 | LOC106584678 | other | downstream | 193810 | 8092701 ~ 8093996 (-) |
| G2195796 | NA | other | downstream | 1002135 | 7285193 ~ 7285671 (-) |
| G2195750 | NA | other | downstream | 1017393 | 7225447 ~ 7270413 (-) |
| LOC110522723 | ticrr | other | upstream | 187084 | 8554896 ~ 8573839 (-) |
| LOC110521266 | LOC106584677 | other | upstream | 652340 | 9030457 ~ 9031665 (-) |
| LOC110522725 | LOC106584670 | other | upstream | 740970 | 9119598 ~ 9125424 (-) |
| G2199158 | NA | other | upstream | 1618088 | 9996725 ~ 9997155 (-) |
| G2196835 | NA | non-coding | upstream | 20011 | 8308382 ~ 8309123 (-) |
