LOC110521255 (api5)


Basic Information

Item Value
gene id LOC110521255
gene name api5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 8775244 ~ 8792307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598708.2
ATGCGCACTAATGTACTTCCTGATACTAATTGTCGTAGCAAGGCTAGTCGTGTACATTGTTGGAACGGAGAACGGGGTTTCATTCGCAGCGTTCTAGAAATTTCCTCTCCCCATTCCCTTGTCCAATACACAGCGCGTAATATTGTCTATGTTTTTGGAGAAATTCTGGACTCAAAGGGAAGAATTTAAAGTCATATCGGTGGAATATTGTTTGTGTTCTCATCTCGACAACACGCAGTTGGACGCACTCTGATGGCGGTCACTATCGAGGAGCTGTATCGTAACTATGGGATTCTTGCTGATGCCAAGCCGGAGGATCTGAGCCAGCACAAAGATGCCTATCAGGTGATCCTTGATGGCGTGAAAGGGGGTCCTAAAGAGAAGCGCTTGGCAGCACAGTTCATTCCCAAATTCTTCAGCAGTTTCCCAGAGCTGGCGGATGCAGCAATCAACGCTCAGCTTGACCTGTGTGAGGATGAAGACGTCTCGATTCGGAGGCAGGCCATCAAAGAGCTCCCCCGTTTCGCAGCCGGGGAGAACATTGTCAGGGTAGCAGATATCCTCACCCAGCTTCTCCAGACAGAAGATTCGGCCGAATTCAACCAAGTGAACACAGCTCTGGTCTCCATCTTCAAGATGGACGCGAAGGCTACACTAGGAGGTCTGTTCTCTCAGATCCTGCAGGGGGAGGACATAGTAAGGGAGAGGGCCATCAAGTTCCTCTCCATCAAGCTGAAGACCATGCCTGAGGACGCCATGACCAAGGAGGTGGAGGACTACATCTTTACCGAGACAAAGAAGGTGCTGGAGGACGTGACTGGGGAAGAGTTTGTGCTGCTGATGCGGATCCTGATGGTGCTGAAGGGCCTGCAGACGATGAGTGGACGGCAGCAGCTGGTGGAGCTGGTGGTGGAGCAGGCCTTTCTGGAGCAGGCCCTGAACCCCGCTGACCCTGACACTGTGGACCGCCTGCTGCAGTGCACGCGCCAGGCCCTGCCCCTCTTCTCTAAAAATGTCCATTCCACCCGCTTCGTCACTTACTTCTGTGACCACGTCCTGCCCAACCTCAGCTCCCTGACCAGTCCCGTGGCAGAGCTGGACATTCAGCTGGAGgtgttgaAGCTGCTTGCTGAGATGAGTCCATTCTGTGGAGACATGGAGAAGGTGGAGACCAACCTCACCATGCTGTTTGAGAAGCTGCTGGAGTTCATGCCGCTGCCTCCAGAGGCGGAGGGTGAGAACGGCGAGAACACACTGAGCGACGAGCCCAAGCTGCAGTTCAGCTACGTGGAGTGTCTCCTCTTCAGCTTCCACCAGCTGGGCAAAAAGCTCCCCGATTTCCTCATTGACAAGATCAATGCAGAGCGCCTCAAAGACTTCAAGATCAGATTACAGTACTTCGCCAGAGGGCTGCAGGTGTACATTCGCCAGCTGCGAGTTGCCCTGCAAGGCAAGACTGGAGACGCACTGAAGACCGAAGAGAACAAGATCAAAGTGGTGGCTCTGAAGATCACCAACAACATCAACGTTCTGATCAAGGATCTCTTCCACAACCCGCCGTCGTACAAGAGCACAGTCACGCTGTCCTGGAAGCCTGTCCAGAAGGCTGAGGCTGTAGCTCTGAAGCGCCCGTCCGGGGAGGATATGGGTGCAGGCAGTACCATGAAGAAGCAGCTGTCCCCCCCCCTGCCCCGGAGGGATGCACGGCAGATCTACAACCCCCCCAGTGGCAAGTACAGCGCCACCATCGGCAACTTCTCTAACGAGCAGCGCGGAGGCTTCAGGGGCGGCCGGGGAAGAGGATTCGGAGGCAGGGGCCGAGGCCGAATCTACTGAgtccaccatcacacacacactacacacactgaaCTGCAGCACATCAGGATCCCTGCCGTAAACCAAGGGGGTCTCCATGACCTCCGCTCCTCAACCTGTGTCCACTTGTTCTTTTTCCTCCGCCTCTAAACACCTGTGCAAaggaagttgttgtttttttggtcGTTTCCTGCCCTCAGAGTAAATCCACTTCAAGGAGACTGGGATTTGGACTTTCCTACCTGACATTTCCACCCTCACACTCTTGCCTGGTGAAGCGATTGTTCAAGTAGATCCTTGTGGTTTTAGTTTTTTATTAGTATTTTTGTGGAACCAGAGACTGACAAGTTGTACCTGATTTGATATTTTTGTCagaaaa

Function

symbol description
api5 Predicted to enable RNA binding activity. Predicted to be involved in negative regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Is expressed in heart. Orthologous to human API5 (apoptosis inhibitor 5).

NR:

description
apoptosis inhibitor 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598708.2 True 2194 mRNA 0.53 14 8775244 8792307
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110521254 hsd17b12 coding downstream 77170 8663433 ~ 8698074 (-)
LOC110521253 LOC106584658 coding downstream 179667 8593268 ~ 8595577 (-)
LOC110521252 LOC106584657 coding downstream 188072 8580509 ~ 8587172 (-)
LOC110522723 ticrr coding downstream 201405 8554896 ~ 8573839 (-)
LOC110521250 LOC106584654 coding downstream 223721 8540200 ~ 8551523 (-)
LOC110521256 LOC106584661 coding upstream 1630 8793937 ~ 8811837 (-)
LOC110521260 LOC106561470 coding upstream 148633 8940940 ~ 9006071 (-)
LOC110521264 LOC106584667 coding upstream 159744 8952051 ~ 8956312 (-)
LOC110521271 LOC106593566 coding upstream 219714 9012021 ~ 9021281 (-)
LOC110521266 LOC106584677 coding upstream 238150 9030457 ~ 9031665 (-)
G2197318 NA non-coding downstream 10604 8764096 ~ 8764640 (-)
G2197247 NA non-coding downstream 30884 8698540 ~ 8744360 (-)
G2197309 NA non-coding downstream 41047 8733831 ~ 8734197 (-)
G2197304 NA non-coding downstream 50973 8723889 ~ 8724271 (-)
G2197301 NA non-coding downstream 67796 8707217 ~ 8707448 (-)
G2197351 LOC106584662 non-coding upstream 26241 8818548 ~ 8819753 (-)
G2197340 NA non-coding upstream 30904 8823211 ~ 8824143 (-)
G2197368 NA non-coding upstream 55137 8847444 ~ 8847694 (-)
G2197367 NA non-coding upstream 55855 8848162 ~ 8848691 (-)
G2197366 NA non-coding upstream 56492 8848799 ~ 8849830 (-)
G2196747 NA other downstream 637134 8126403 ~ 8138110 (-)
G2196733 LOC106596922 other downstream 668191 8099671 ~ 8107053 (-)
G2196731 LOC106584678 other downstream 681248 8092701 ~ 8093996 (-)
LOC110522725 LOC106584670 other upstream 327300 9119598 ~ 9125424 (-)
G2199158 NA other upstream 1204418 9996725 ~ 9997155 (-)
G2199159 NA other upstream 1205113 9997420 ~ 9998649 (-)
LOC110522734 celsr1 other upstream 2126280 10918587 ~ 11012095 (-)

Expression

LOC110521255(api5) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110521255(api5) Expression in each Bioproject

Bar chart with 21 bars.
LOC110521255(api5) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network