LOC110521266 (LOC106584677)


Basic Information

Item Value
gene id LOC110521266
gene name LOC106584677
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 9030457 ~ 9031665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969457.1
CAGATGGGGGAAAACAGTTTGAAATCCATGCTGAgaatccaggagagagagaaggagatgcagGAGCTGAGACAGGCTGTGGACTCTCTGAAGCGCTCTGCACAAGAGGAGTTGTCTGACAGTGAGAGGACCTTAACTGAGCTGATCCTCTTCATTGAGAGAAGGCGCTCTGAGGTGAACGAGCTGATCAGAGCCAAGGAGGAGGCTGAAGTGAGTCGAGCTAAAAGGCGACTGCAGCAACTGGAACAGGAAGTGGCTGAGTTGAAGAGGAGAGATACTGAACTAAAGCAGCTTTCACACACAGAGGATAACATCCATTTCCTCCAGAGTTTCCAGTCTCTCTGTGTTACTCCTGGATCTGAGGCCATACCCAGCATCAGTATCACATTTGAACAAGCGAAGAAATATGTCTCTGACCTGAAAGAGATCTGCAAGGTGGAAATGGACAGGATATCCAGGAAAGATGTGTTTAAATCAAATAATATGATTataatatttgtttttattattgtcttgtttctaatgttttttgggagagggggggggcgggggatgaatcagctttaatattgcagatagattgtgacTTATATCAgcgtaattgtctgcatcatttccaataccccatatatatatattttgaaaacatcatcttaaatatattttccttttttTATGAATTTCCCCAAACCCTACTACcactcccctaactggagtaaactaatggacagaATACTTAGGCTTccacttccagcttatacataatACATACATTTCACGGACACTGTATTTGAcattagttatcttttgtttgtttttactcccatccctcagctaccctcaacctctcccatctacctctgaagaccatccagttttgatttctatttgccatatacaTTTCTCATATTCTGAACCTTTCTAATCTcacagtttctacagattgtaaatattAAGGATAAACAcctttgctaagagta
>TU2514429
CAGAAGCAGATGGGGGAAAACAGTTTGAAATCCATGCTGAgaatccaggagagagagaaggagatgcagGAGCTGAGACAGGCTGTGGACTCTCTGAAGCGCTCTGCACAAGAGGAGTTGTCTGACAGTGAGAGGACCTTAACTGAGCTGATCCTCTTCATTGAGAGAAGGCGCTCTGAGGTGAACGAGCTGATCAGAGCCAAGGAGGAGGCTGAAGTGAGTCGAGCTAAAAGGCGACTGCAGCAACTGGAACAGGAAGTGGCTGAGTTGAAGAGGAGAGATACTGAACTAAAGCAGCTTTCACACACAGAGGATAACATCCATTTCCTCCAGAGTTTCCAGTCTCTCTGTGTTACTCCTGGATCTGAGGCCATACCCAGCATCAGTATCACATTTGAACAAGCGAAGAAATATGTCTCTGACCTGAAAGAGATCTGCAAGGTGGAAATGGACAGGATATCCAGGA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969457.1 False 980 mRNA 0.41 3 9030457 9031659
TU2514429 True 466 TUCP 0.49 3 9030977 9031665

Neighbor

gene id symbol gene type direction distance location
LOC110521271 LOC106593566 coding downstream 9176 9012021 ~ 9021281 (-)
LOC110521264 LOC106584667 coding downstream 74145 8952051 ~ 8956312 (-)
LOC110521260 LOC106561470 coding downstream 83139 8940940 ~ 9006071 (-)
LOC110521256 LOC106584661 coding downstream 218620 8793937 ~ 8811837 (-)
LOC110521255 api5 coding downstream 238150 8775244 ~ 8792307 (-)
LOC110521265 LOC106584675 coding upstream 7316 9038975 ~ 9042022 (-)
LOC110521269 LOC106584674 coding upstream 13015 9044674 ~ 9050503 (-)
LOC110521267 LOC106584673 coding upstream 19072 9050731 ~ 9062291 (-)
LOC110521259 LOC106584672 coding upstream 31021 9062680 ~ 9104783 (-)
LOC110522725 LOC106584670 coding upstream 87939 9119598 ~ 9125424 (-)
G2197432 NA non-coding downstream 20311 9008041 ~ 9010146 (-)
G2197498 NA non-coding upstream 37635 9069294 ~ 9069628 (-)
G2197503 NA non-coding upstream 46241 9077900 ~ 9078137 (-)
G2197507 NA non-coding upstream 58945 9090604 ~ 9091173 (-)
G2197510 NA non-coding upstream 64649 9096308 ~ 9096903 (-)
G2197511 NA non-coding upstream 66687 9098346 ~ 9098545 (-)
G2197247 NA other downstream 286826 8698540 ~ 8744360 (-)
LOC110522723 ticrr other downstream 462223 8554896 ~ 8573839 (-)
G2196747 NA other downstream 892347 8126403 ~ 8138110 (-)
G2196733 LOC106596922 other downstream 923404 8099671 ~ 8107053 (-)
G2196731 LOC106584678 other downstream 936461 8092701 ~ 8093996 (-)
G2199158 NA other upstream 965066 9996725 ~ 9997155 (-)
G2199159 NA other upstream 965761 9997420 ~ 9998649 (-)
LOC110522734 celsr1 other upstream 1886928 10918587 ~ 11012095 (-)
G2199633 NA other upstream 1982868 11014527 ~ 11014968 (-)
G2197343 NA non-coding downstream 56187 8974291 ~ 8974790 (-)
G2197411 NA non-coding downstream 62349 8966894 ~ 8968628 (-)
G2197332 LOC106587646 non-coding downstream 64334 8862358 ~ 8966643 (-)

Expression


Co-expression Network