LOC118945823


Basic Information

Item Value
gene id LOC118945823
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10012263 ~ 10039237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040983.1
CCTTTAAATTCACAAACACTACTAGAGTTAAGAAGTCTCCTATGTTGACGAATTGGTAGACATAAGTAGGTATCCTAAACGGCAGTGCTACACTCAGGTAATTCGCCCCTCACTCGGCGAATCACGACAACCGCCCAACAGAATAAAGTCGACTTCAATTGCTTTCACTTACTTTATGAAGTAGCCGGCCCCTTCGTCCGTGAAACCCTCTTCCCATCCTCGAGGTTCGCCCGTTCGCGGATGGAGCCAAGTAGTGGTGCTCGTTTCATCGCTGCCAGAAAGACAAAAACACCTGTTAGAGGCAAGAAACACTCGACAAGCGAACTCTCATTAAAGATGCAGAAAGAACGACCACATTTGTATTTCGCCGACTCACTGAACGAAAAACACTCTGCCATCTCCGCAGACACCGAAAGACCATTGCTCAGGTTGGGACCAACATGGATGAGTACCTGCACCAGGCGGAGGTGACGAGACACCACCCATTTGTGTTGGCTCTTGGAGAATGCTGACATTTTGTTTACAGTAATTAGTGGACAGGCATTGGAGCAAGGTACACTGCTTGGGGCACTGGATGTGTGATTCAAGTCCTATTATGTGTTTTGATATCAACTTTCCCACTGTGCCCCAGCATGGGAACTCCTAAAGACCACATTGTATCAGCTGCCAGGAATATAATTTTTCACTGAACAATAGTGGATAAGTATCTGCTCTTGTATGTACTGTGAGAAGTGACCGgaggaagccccccccccccccccctcccggctGATGTCTTCCTGTGAATTAATAGATCAATCGATGGATGAGCCATAAGTGTCTCATTCCAAAGCTAATATGCTCTTAAGGCACTTTGTATCTCTGTTAAATTGACTTTTAGTTTGTTTTTTAATGCATTTGTGTCATCTTTTTGCTACAGTATGGTATGTGGCTTGTTTGCCTTTAGTTCAACTACTGAAGTGTGTTCTGGTACACTTTTATTCTATCTCAACAattgatttgaaaaacaaatgttacATTATGGGGGTTGTAAAAGTGCATTTATGAATGAAATACAGTTATTAAGTAATGAGTCATTAGTCCATGTCTTTAGTAGAGTGACCTTCAAATGTTTTGTGTAACAATGTTTTAACTCGACCCAAATGTAGACCATTATTGTATGGCAAAACAGCATGGTGTGTGCTCTCACCTAAGATGGCCGACGTGTGTCAGTGAATGTGAATATCTATTGATTGGCACTGTCTGAGACAGACCTGTGTTAGTACCATTTTGAGACTGTGTCACACACACGCTTTGTTTTCTCAGATTGCAATCAATTTcaacaatgtgaaatgtcagaataatagtagagaatttgTATTTcatctttcatttctttcatcacattccctgtgggtcagaagtttacatatactcaattagtatttggtagcattgcctttca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040983.1 True 1444 mRNA 0.42 3 10012263 10039237

Neighbor

gene id symbol gene type direction distance location
LOC110521288 LOC106584625 coding upstream 169756 9839621 ~ 9842507 (+)
LOC110521286 LOC106584623 coding upstream 177634 9830522 ~ 9834629 (+)
LOC110522729 eki1 coding upstream 417358 9579503 ~ 9594905 (+)
LOC110521283 LOC106584619 coding upstream 475584 9458616 ~ 9536679 (+)
calcb LOC100135819 coding upstream 562429 9418139 ~ 9449834 (+)
nucb2b LOC106584632 coding downstream 103594 10142831 ~ 10151795 (+)
LOC110521292 LOC106584633 coding downstream 121722 10160959 ~ 10165266 (+)
LOC118945825 NA coding downstream 144944 10184181 ~ 10184698 (+)
LOC118945768 NA coding downstream 162499 10201736 ~ 10202482 (+)
LOC118945824 NA coding downstream 163857 10203094 ~ 10204823 (+)
G2198186 NA non-coding upstream 29862 9981375 ~ 9982401 (+)
G2198139 NA non-coding upstream 43792 9921539 ~ 9968471 (+)
G2198170 NA non-coding upstream 49330 9962508 ~ 9962933 (+)
G2198145 NA non-coding upstream 85317 9925798 ~ 9926946 (+)
G2198108 NA non-coding upstream 139946 9870649 ~ 9872317 (+)
G2198255 NA non-coding downstream 37007 10076244 ~ 10119768 (+)
LOC118945815 NA non-coding downstream 260212 10298713 ~ 10305453 (+)
G2198363 NA non-coding downstream 272024 10311261 ~ 10363358 (+)
G2198422 mob2 non-coding downstream 438118 10477355 ~ 10479163 (+)
G2198458 NA non-coding downstream 475104 10514341 ~ 10515674 (+)
G2197955 NA other upstream 391976 9619867 ~ 9620287 (+)
G2197055 LOC106584658 other upstream 1416755 8593374 ~ 8595508 (+)
LOC110522717 LOC106584678 other upstream 1919454 7818281 ~ 8094067 (+)
LOC110521236 LOC106584692 other upstream 2296405 7536855 ~ 7718520 (+)
G2198247 NA other downstream 182413 10221650 ~ 10224117 (+)
LOC110521306 LOC106584595 other downstream 829124 10799756 ~ 10920504 (+)
G2198837 NA other downstream 1104976 11144213 ~ 11144672 (+)
LOC110521323 LOC106561036 other downstream 1697237 11683849 ~ 11796935 (+)
G2202196 NA other downstream 3161901 13201138 ~ 13201491 (+)

Expression


Co-expression Network