LOC118945768


Basic Information

Item Value
gene id LOC118945768
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10201736 ~ 10202482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118945768
CACCTGGAACAAAACTATTTGTCTCTCTTGAAGTTCCACgcaattctctctccctctaatccctccctctctccttctaacCACACCCATCTGGCAGAACCAGGAAGTCCATCCTCCTCCCACAAACtcttctgatgaaacaaaactgaTCTGAGTCTCGTTGTCAactgtctgtgtgagagtgaaCAACCGTCCAAATGGCTCAGCAGGGAATTCAGCTGGACCCAGaccagttctgtctgtctggatctacTGAAGGAACCAGTTACCATCCCCTGTGGACACAGTTACTGTAGAAGCTGTATTGAGGGCTGCTGGGATCAGGATGTTCTGAAAGGCTATAGCTGTCCTCAGTGCAGACAGACCTTCACTCCAAGGCCCGCTCTGAGGAAAAATAACATGTTGGCTGAGGTTGTGGAGAAACTGAGAAAGACAGGACTCCAGGGTGCTCCCCCTCCTGCTCTGTGCTAtgctggacctggagatgtggCGTGTGACATCTGCACTGGgaccagaaagcagaaagccctcatgtcatgtctggtgtgtctggcctcttactgtgagactcacctcCAAACTCACAATGAATCCGCTGCTTTCAAGAAGCACAAGCTGGTCAAAGCCACCGCACAACCACAGGAGAATATCTGCTCTCATCATGacaaactgctggaggtttaCTGTCGTACCGATCAGGCCATGATACAGTGTCAGCTAGAGCAGAGAGGACTGAGAAACCGGTAA

Function

NR:

description
fish virus induced TRIM protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118945768 True 747 mRNA 0.50 1 10201736 10202482

Neighbor

gene id symbol gene type direction distance location
LOC118945825 NA coding upstream 17038 10184181 ~ 10184698 (+)
LOC110521292 LOC106584633 coding upstream 36470 10160959 ~ 10165266 (+)
nucb2b LOC106584632 coding upstream 49941 10142831 ~ 10151795 (+)
LOC118945823 NA coding upstream 162499 10012263 ~ 10039237 (+)
LOC110521288 LOC106584625 coding upstream 359229 9839621 ~ 9842507 (+)
LOC118945824 NA coding downstream 612 10203094 ~ 10204823 (+)
LOC110521295 LOC106584582 coding downstream 5761 10208243 ~ 10247642 (+)
LOC110521299 LOC106584584 coding downstream 57738 10260220 ~ 10265123 (+)
LOC110521300 LOC106584586 coding downstream 78890 10281372 ~ 10313057 (+)
LOC118945815 NA coding downstream 96231 10298713 ~ 10305453 (+)
G2198255 NA non-coding upstream 81968 10076244 ~ 10119768 (+)
G2198212 NA non-coding upstream 181487 10014267 ~ 10020249 (+)
G2198186 NA non-coding upstream 219335 9981375 ~ 9982401 (+)
G2198170 NA non-coding upstream 238803 9962508 ~ 9962933 (+)
G2198145 NA non-coding upstream 274790 9925798 ~ 9926946 (+)
G2198363 NA non-coding downstream 108779 10311261 ~ 10363358 (+)
G2198422 mob2 non-coding downstream 274873 10477355 ~ 10479163 (+)
G2198458 NA non-coding downstream 311859 10514341 ~ 10515674 (+)
G2198499 NA non-coding downstream 363121 10565603 ~ 10565848 (+)
G2197955 NA other upstream 581449 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 752083 9418139 ~ 9449834 (+)
G2197055 LOC106584658 other upstream 1606228 8593374 ~ 8595508 (+)
LOC110522717 LOC106584678 other upstream 2108927 7818281 ~ 8094067 (+)
LOC110521236 LOC106584692 other upstream 2485878 7536855 ~ 7718520 (+)
G2198247 NA other downstream 19168 10221650 ~ 10224117 (+)
LOC110521306 LOC106584595 other downstream 665879 10799756 ~ 10920504 (+)
G2198837 NA other downstream 941731 11144213 ~ 11144672 (+)
LOC110521323 LOC106561036 other downstream 1533992 11683849 ~ 11796935 (+)
G2202196 NA other downstream 2998656 13201138 ~ 13201491 (+)

Expression


Co-expression Network