LOC118945824


Basic Information

Item Value
gene id LOC118945824
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10203094 ~ 10204823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040984.1
GGCCCTTATCCAATCCCACTGACCCCACTGTTGGGAACAGGCTGTCTGGACCCCTTTCAGAGAGCCAACAGGATATGAACCCAGTTCTACCGAGGGAGAAACCAACATCTTGACCATTACACCAAGAGAACATTCCTTATTGGACCGAGGGCCGACACTGATTTTGACGTCTCAGGCGGACTACCTCATCACATAACCTTGAGTAACCACGGCTGACCCATGTCCTCTATACATTCCTGTCACTTtctctcaattaaattacatttaattCAAAGGAGGGGGTGACGAGGGCCTCAGCCAGCCTCAGTAGGATGTACTGGGGAGCCAGCTGGATGCAGGCCATGGAGGACACCTGGAGCACCTTCCCTGACAGGGCCTGCTCCGTTAGAGGATAGCCCTTCCTGTGGACCTCAGACAGGCCCTCCACCAGGACAGACAGGCCCGCTACCAGGACAGACAGGGACGCACTCATGACCCAgtgctgggagaggagaggagaggagaggagacatggagagagacatggagagagacattaACATTGACTGAGTCATTGATGAGGATGATATTTGTTGttcatgtgtgtgcgtgcctgtgtgtgcgtgcttacTGATGACTCTGGCGGGGGAGAAGGGTGTTTTCTCCATGGACAGGTTGCAGGAGGTGACACACTCTACTTTATGGAGCAGAAATGAACATTAGATTTGCCTTTTTTTTTACTCACAACATCTGAAAAATGTGGTACTTGTACTTTCCACTGAAATGAAAAATGTAAATATCTCATGTGAAGCATGTCAGTGAAGAGGCCTGATGTTCTCCATTACATTGACCTGACTGAGTGATGCAGGCGCGGTACAGTATCTGCAAGCCGTACAGGGGGAAGAGCCTTGCCAGGACCTTGACGTTCTCCACGTGTGTCTCTTCAGAGAGTTCAGGAACACCCCAAAGTGGTCAACAGGGAACTGCCTGCACAACAAACACATCAATACTGGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatcaaTACTAGAATAGACCACATCAACCACATCAATACTAGACTAGACCACATCAATACTAGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatctaTACTAGAATagaccacaacaaccacatcaaTACTAGAATagaccacaacaaccacatctaTACTAGAATagaccacaacaaccacatcaaTACTAGAATAGACCACTTAAACCTAGGTATATACATACACTGTAACACAAAGGTGAAACATAGTCTGTGTGAAGTTGAGGTTGTGTTACCTTTTTTGGGCCTGAAGTTGAGGTTGTGTTACCTTTCTTGGGCCTGAAGGTGAGGTTGAGGTTGTGTTACCTTTCTTGGACCTCTAATGAGGTTGTTgtagaccat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040984.1 True 1502 mRNA 0.46 3 10203094 10204823

Neighbor

gene id symbol gene type direction distance location
LOC118945768 NA coding upstream 612 10201736 ~ 10202482 (+)
LOC118945825 NA coding upstream 18396 10184181 ~ 10184698 (+)
LOC110521292 LOC106584633 coding upstream 37828 10160959 ~ 10165266 (+)
nucb2b LOC106584632 coding upstream 51299 10142831 ~ 10151795 (+)
LOC118945823 NA coding upstream 163857 10012263 ~ 10039237 (+)
LOC110521295 LOC106584582 coding downstream 3420 10208243 ~ 10247642 (+)
LOC110521299 LOC106584584 coding downstream 55397 10260220 ~ 10265123 (+)
LOC110521300 LOC106584586 coding downstream 76549 10281372 ~ 10313057 (+)
LOC118945815 NA coding downstream 93890 10298713 ~ 10305453 (+)
LOC110522733 LOC106584588 coding downstream 117286 10322109 ~ 10458656 (+)
G2198255 NA non-coding upstream 83326 10076244 ~ 10119768 (+)
G2198212 NA non-coding upstream 182845 10014267 ~ 10020249 (+)
G2198186 NA non-coding upstream 220693 9981375 ~ 9982401 (+)
G2198170 NA non-coding upstream 240161 9962508 ~ 9962933 (+)
G2198145 NA non-coding upstream 276148 9925798 ~ 9926946 (+)
G2198363 NA non-coding downstream 106438 10311261 ~ 10363358 (+)
G2198422 mob2 non-coding downstream 272532 10477355 ~ 10479163 (+)
G2198458 NA non-coding downstream 309518 10514341 ~ 10515674 (+)
G2198499 NA non-coding downstream 360780 10565603 ~ 10565848 (+)
G2197955 NA other upstream 582807 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 753441 9418139 ~ 9449834 (+)
G2197055 LOC106584658 other upstream 1607586 8593374 ~ 8595508 (+)
LOC110522717 LOC106584678 other upstream 2110285 7818281 ~ 8094067 (+)
LOC110521236 LOC106584692 other upstream 2487236 7536855 ~ 7718520 (+)
G2198247 NA other downstream 16827 10221650 ~ 10224117 (+)
LOC110521306 LOC106584595 other downstream 663538 10799756 ~ 10920504 (+)
G2198837 NA other downstream 939390 11144213 ~ 11144672 (+)
LOC110521323 LOC106561036 other downstream 1531651 11683849 ~ 11796935 (+)
G2202196 NA other downstream 2996315 13201138 ~ 13201491 (+)

Expression


Co-expression Network