LOC110521295 (LOC106584582)


Basic Information

Item Value
gene id LOC110521295
gene name LOC106584582
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10208243 ~ 10247642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598759.2
CAGAAAGTAATATTTGAGACTACTGCCATTGTTTAACCTACGAGAGAAAGCACCAAAATGGCAGAGAATCAGGAACTGTTCTGTTGCTCCATCTGTCTGGATCTACTGAAAGATCCGGTGACTACTGCCTGTGGACACAGTTACTGTGTGGGCTGTATTAAAGAAAGCTGGGATCAGGATGATCTGAAAGGTGTCTACAGATGTCCCCAGTGCAGACAGACCTTTACCCCAAGACCTGTTCTGAAGAGAAACATTGTGCTGGCTGAAGTGGTGGAGAATCTGAAGAAGACAGGACTCCAGGCTGCTCCCCCTCCTGCTCTGTGCTAtgctggacctggagatgtggCGTGTGATTTCTGCACTGGgaccagaaagcagaaagccctcatgtcctgtctggtgtgtctggcctcttactgtgagactcacctcCAACTTCACTATGAATCTCGTGCTTTGAAGAAGCACAAGCTGGTCAAAGCCACCGCACAACTACAGGAGAAGATCTGCTCTCATCATGACAAACTGCTGGAGGTTTTCTGTCGTACCGATCAGCAGTGTATCTGTTATCAGTGTGTGATGGATGAACATAAAGGCCATGATACAGTGTCAGCTTCAGCAGAGAGGACTGAGAAACAGAGGCAGCTGGGGATGAGTCAGCAGAAGGTCCAGCAGagattccaggagagagagaaggagctgaaGGAGCTCCAACAGGCTGTGGAATCTCTCAAACGCTCTGCACAGGCAGCAGTGGAGGACAATGATCAGATCTTCACTGAGCTGATCCGCTCCATTGAGAGAAGGCGCTCTGAGGTGAAGAAGCTGATCAGAGCCCAACAGAAGGCTCAGGTGAGTCAAGCTGAAGGACTCCTGGAGCAACTGAAGCAGGAGATAGCTGAGCTGAGGAAGAGAAGcactgagctggagcagctctcacacacagaggatcacatCCATTTCCTCCAGagttatcagtctctcgcCAGTATCAGTGTATCTTCAGACTTACCCAGCATCATTGTCCATCCTCTTCAGTACTTTAgagatgtgagtaagactgtatctgaactgagagagaaagtagaAGACTTCCTTAAAGGAGAATGGACCAAGATCTCCACTACAGtgaataTAGTGGATATTGTACTGCCTCCAGAGCCCAAGACCAGAGAACAGTTCTTACAATattcctgtcagctcacactggacccaaacacagcacacacacgcctctctctgtctaaagggaacagaaaggtgacCTATACAGGCCAAGTCCAACCATATCCTGATCATCCAGACAGATTCACAAATGACTTGATggtgctgtgtagagagggtctgtctagacgctgttactgggaggtggagtggagtgggcTGTGTGTTATTACAGCAGTCTCATATAAAGACATCAGCAGAACAAGGAGAAGTAATACATTTGGACTCAATGACAAGTCTTGGAGTTTACACTACTATAGTGATGGTTATTGGTTCAGACACAATAGTGTTAGGACGAAAATACCAGGCGTTCAGTcctccagagtaggagtgtacctggatcacaaggcaggtactctgtccttctacagtgtctctgacacaatgaccctcctccacagagtccagaccacattcactcagctCCTCTATCCTGGGTTTTCTATCGATTGTATTTTCTCTGGTactgctgagctggttaaactgtagtaagGGCCCATTTACTAAATTAATTAAAATTATTCAAATGCAAAGTTTTCATCTTGTACATCAAAATGTCTCTATGGTACttctgagctggttaaactgtagtagggtccacatagatactagtcatgctggtgtagtctatagctgagctggttaaactgtagtagggtctccacatagatac
>XM_036969437.1
AATATTTGAGACTACTGCCATTGTTTAACCTACGAGAGAAAGCACCAAAATGGCAGAGAATCAGGAACTGTTCTGTTGCTCCATCTGTCTGGATCTACTGAAAGATCCGGTGACTACTGCCTGTGGACACAGTTACTGTGTGGGCTGTATTAAAGAAAGCTGGGATCAGGATGATCTGAAAGGTGTCTACAGATGTCCCCAGTGCAGACAGACCTTTACCCCAAGACCTGTTCTGAAGAGAAACATTGTGCTGGCTGAAGTGGTGGAGAATCTGAAGAAGACAGGACTCCAGGCTGCTCCCCCTCCTGCTCTGTGCTAtgctggacctggagatgtggCGTGTGATTTCTGCACTGGgaccagaaagcagaaagccctcatgtcctgtctggtgtgtctggcctcttactgtgagactcacctcCAACTTCACTATGAATCTCGTGCTTTGAAGAAGCACAAGCTGGTCAAAGCCACCGCACAACTACAGGAGAAGATCTGCTCTCATCATGACAAACTGCTGGAGGTTTTCTGTCGTACCGATCAGCAGTGTATCTGTTATCAGTGTGTGATGGATGAACATAAAGGCCATGATACAGTGTCAGCTTCAGCAGAGAGGACTGAGAAACAGCAACAGTTGGGAGAAACACAGAAGGAAGGGAAGCAGAGAGCccagaggaaagagaaggaggtgcAGGAGCTGAGACAGGCTGTAGATGCCATTAAGGAGTCTTCATGGGTAGCCGTGGATGACTTTGAGAGAATGTGTTCCATGCACATCCTTTCATATATTCGCTCCATTGAGAGAAGGTGTTCTGAGGTGAAGGAGCAGATCAGAGCCCAGGAGAAGGCTGGAGTGAGTCAGGCTGAAGGACTCCTGGAGCAACTGGAGCAGGAGGTTGCTGAGTTCAAGAGGAGAGATTctgagctggagcagctctcacacacagaggatcacatCCATTTCCTCCAGAGTATCGATTCTCTCTGTGGCCCTCCTGGACCAAAGGCATTTCCTAGCAGTTTGGAAGCAGTGAAGAAATTTGTCtctgaacagaaagagagaatggaaAATACATGCAAGGAGGAAACCGACAAGATGTTGAATTCTCTcgaaaaaaaaatgtTGACAAACCCATCTTCACCACCTGTGCAAGAGTACAGTACGAGAAGTGGATTTCTGAAAGACTATCGTACCATAGAAGTGGATCCCAACACCGCATGtgcaactctctctctgtcaaacagaAACAAGGAGATAGCATGGAGTGACAAGGCCCAGGCCTATTCAGACCATCTAGACAGGTTTACTTACTATCACCAGGCTCTGTGCAAAGTGGGGCTGTCTGAAACCTGCtactgggaggtagagtggagCGGGGGCATCGTTGATGTGGCAGTCTCATACAGAGGGATCAGCAGGAAGGGTTGGGGCAATGACTGTTGTTTTGGACACAATGATCAGTCCTGGAGTTTGGTCTGCTCTCCCTCCAGTTGTTCATTCTGgcacaataataacaacaaaacCAACATTCCTGTCCCCCGCGcctccagagtaggagtgtacctgGACCACAAGGCAGGTACCCTGTCCTTCTACAGCATCTCTAACACAATGGCCCTACTCCACAGAGTCCAGACTAtattcactgagcccctctatcctggGTTTGGAGTTGATTTAGGATCATCTCTAAAGATATGCCACCTGCCAGTATGACAATGCTCTAACAACACTCAAACCCCTCCTAACATGTTGTGGTCCTGGTACACTAACCCCAGGCTTGCTCTACTGGCGTTTTACTCACTTTATTTTTGTTAAATATGCTGTGTCAGATTCTTttgtaaaaataatttaaaaaggaGTGCCGAtattttggttaagggcttgtaagcattttgATTTTTGATTCCAGATATTGACCAATCAATTTCAGCTCGTCTATATTAGTAGATGGGCACGCTCTCATGGCTTCATATGTGTTTTTTGATTAATGTCAGATTAATCCAATTAAAGTAAGAATGGTATGACCTTG
>XM_021598758.2
CAGTCAAGTAGGAAGCCACTCCCTCTCCTCTGGTGTAGAGCTCAATGAAACAGAAAGTAATATTTGACACTGCCATTGCTTAAAACCTATGAGAGAAAGCACCAAAATGGCAGAGAATCAGGAACTGTTCTGTTGCTCCATCTGTCTGGATCTACTGAAGGATCCGGTTACTTTTCCCTTCAGACACAGCTGTATGCAACGTCATCTTCTTAGTTTAACTTCCATCCAAACCACATCCCTGTAGACACAGAGTTTCACAGCCCAGTAGGAAGCCACTCCCTCAATGAAACAGAAAATAATCTTTGACAAGCTGTTGCTCATCTTTCGGGTGAAAGCACTAAAATGGCTGACAATCAGGAACTGTTCTGTTGCTCCGTCTGTCTGGATCTACTGAAGGATCCGGTGACTACTGCCTGTGGACACAGTTACTGTATGGGCTGTATTAAAGAAAGCTGGGATCAGGATGATCTGAAAGGTGTCTACAGATGTCCCCAGTGCAGACAGACCTTTACCCCAAGGCCTGTTCTGAAGAGAAACACCGTGCTGGCTGAAGTGTTGGAGAatttgaaaatggcagatttcaAAGGTACCACTCCTGCACACTGTTATGCTGAACCTGAAGATGTGGAGTGTGATGTCTGCACTAGGAAAAAACTCAAAGCTGTCAAgtcctgtctggtgtgtctggcctcttactgtgagactcaTCTCCAGCCTCACTACTATGTGTCCCCACTAAAGAAGCATAAGCTTGTCAATGCAGTGACAGATCTACAGGAGAAGATTTGCCCAAACCATGacaaactgctggaggtttactgtcgtaccgatcagcagtgtatctgtctgctgtgtttgatggatgaacataaaggccatgatacagtgtcagctgcagcagagaggactgAGAAACAGCAACAGTTGGGAGAAACACAGAAGGAAGGGAAGCAGAGAGCccagaggaaagagaaggaggtgcAGGAGCTGAGACAGGCTGTAGATGCCATTAAGGAGTCTTCATGGGTAGCCGTGGATGACTTTGAGAGAATGTGTTCCATGCACATCCTTTCATATATTCGCTCCATTGAGAGAAGGTGTTCTGAGGTGAAGGAGCAGATCAGAGCCCAGGAGAAGGCTGGAGTGAGTCAGGCTGAAGGACTCCTGGAGCAACTGGAGCAGGAGGTTGCTGAGTTCAAGAGGAGAGATTctgagctggagcagctctcacacacagaggatcacatCCATTTCCTCCAGAGTATCGATTCTCTCTGTGGCCCTCCTGGACCAAAGGCATTTCCTAGCAGTTTGGAAGCAGTGAAGAAATTTGTCtctgaacagaaagagagaatggaaAATACATGCAAGGAGGAAACCGACAAGATGTTGAATTCTCTcgaaaaaaaaatgtTGACAAACCCATCTTCACCACCTGTGCAAGAGTACAGTACGAGAAGTGGATTTCTGAAAGACTATCGTACCATAGAAGTGGATCCCAACACCGCATGtgcaactctctctctgtcaaacagaAACAAGGAGATAGCATGGAGTGACAAGGCCCAGGCCTATTCAGACCATCTAGACAGGTTTACTTACTATCACCAGGCTCTGTGCAAAGTGGGGCTGTCTGAAACCTGCtactgggaggtagagtggagCGGGGGCATCGTTGATGTGGCAGTCTCATACAGAGGGATCAGCAGGAAGGGTTGGGGCAATGACTGTTGTTTTGGACACAATGATCAGTCCTGGAGTTTGGTCTGCTCTCCCTCCAGTTGTTCATTCTGgcacaataataacaacaaaacCAACATTCCTGTCCCCCGCGcctccagagtaggagtgtacctgGACCACAAGGCAGGTACCCTGTCCTTCTACAGCATCTCTAACACAATGGCCCTACTCCACAGAGTCCAGACTAtattcactgagcccctctatcctggGTTTGGAGTTGATTTAGGATCATCTCTAAAGATATGCCACCTGCCAGTATGACAATGCTCTAACAACACTCAAACCCCTCCTAACATGTTGTGGTCCTGGTACACTAACCCCAGGCTTGCTCTACTGGCGTTTTACTCACTTTATTTTTGTTAAATATGCTGTGTCAGATTCTTttgtaaaaataatttaaaaaggaGTGCCGAtattttggttaagggcttgtaagcattttgATTTTTGATTCCAGATATTGACCAATCAATTTCAGCTCGTCTATATTAGTAGATGGGCACGCTCTCATGGCTTCATATGTGTTTTTTGATTAATGTCAGATTAATCCAATTAAAGTAAGAATGGTATGACCTTG

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598759.2 False 1897 mRNA 0.47 6 10208243 10219657
XM_036969437.1 False 2036 mRNA 0.47 6 10208251 10247642
XM_021598758.2 True 2323 mRNA 0.46 6 10241304 10247642

Neighbor

gene id symbol gene type direction distance location
LOC118945824 NA coding upstream 3420 10203094 ~ 10204823 (+)
LOC118945768 NA coding upstream 5761 10201736 ~ 10202482 (+)
LOC118945825 NA coding upstream 23545 10184181 ~ 10184698 (+)
LOC110521292 LOC106584633 coding upstream 42977 10160959 ~ 10165266 (+)
nucb2b LOC106584632 coding upstream 56448 10142831 ~ 10151795 (+)
LOC110521299 LOC106584584 coding downstream 12578 10260220 ~ 10265123 (+)
LOC110521300 LOC106584586 coding downstream 33730 10281372 ~ 10313057 (+)
LOC118945815 NA coding downstream 51071 10298713 ~ 10305453 (+)
LOC110522733 LOC106584588 coding downstream 74467 10322109 ~ 10458656 (+)
LOC110521301 LOC106584589 coding downstream 224210 10471852 ~ 10475563 (+)
G2198255 NA non-coding upstream 88475 10076244 ~ 10119768 (+)
G2198212 NA non-coding upstream 187994 10014267 ~ 10020249 (+)
G2198186 NA non-coding upstream 225842 9981375 ~ 9982401 (+)
G2198170 NA non-coding upstream 245310 9962508 ~ 9962933 (+)
G2198145 NA non-coding upstream 281297 9925798 ~ 9926946 (+)
G2198363 NA non-coding downstream 63619 10311261 ~ 10363358 (+)
G2198422 mob2 non-coding downstream 229713 10477355 ~ 10479163 (+)
G2198458 NA non-coding downstream 266699 10514341 ~ 10515674 (+)
G2198499 NA non-coding downstream 317961 10565603 ~ 10565848 (+)
G2197955 NA other upstream 587956 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 758590 9418139 ~ 9449834 (+)
G2197055 LOC106584658 other upstream 1612735 8593374 ~ 8595508 (+)
LOC110522717 LOC106584678 other upstream 2115434 7818281 ~ 8094067 (+)
LOC110521236 LOC106584692 other upstream 2492385 7536855 ~ 7718520 (+)
LOC110521306 LOC106584595 other downstream 620719 10799756 ~ 10920504 (+)
G2198837 NA other downstream 896571 11144213 ~ 11144672 (+)
LOC110521323 LOC106561036 other downstream 1488832 11683849 ~ 11796935 (+)
G2202196 NA other downstream 2953496 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 3044594 13292190 ~ 13301806 (+)

Expression


Co-expression Network