hdhd5 (LOC100380646)


Basic Information

Item Value
gene id hdhd5
gene name LOC100380646
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10265335 ~ 10271358 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598762.2
GGTATGGGTTGACACCGACGGAAAGCAAGCTTGCCAACGCGTGGCCATCTGTTATTCATATGGCAGCTTGCTATCAAGTTTAGAGATGGCACACTTTTCACCTTCTATTGTCGTGTATGATATAGCTAGCTATGTAGTTCCTATAGCTAGTTAGTGCTTGGTAGTGTGTAACGTTACTGctgttgtttttttgtctgtAGTGATTGTTTTAGCTAACTTAagcttgttagctaacgttagggGAAATGGCAGAGTTACTGCAAAGATGTAACGTTTTGAAATTTGGTTGGCGACTCCTGAAGTCAAGTCACGCAGGAGCAGGCAAACAACTGTATATCTCATCACAGAGTTCCAGCAATGGCCACAACTTGTTCGGGCTTCTCTTCGACATCGATGGGGTGCTAGTGCGGGGCCGCACACCCATCCCTGCAGCCAAACAGATCTTTAGGAGCTTGGTGGACAGGAAGGGGAAGTACAAAGTGCCTGTGGTGTTTGTGACCAACGCAGGGAACTCTATGAGGCAGACCAAAGCTGAACAACTGTCGCACCTGCTGGAAGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCAGTCAGTATCACAACATGTGTGTTCTGGTGTCAGGACAGGGCCCAGTGCTGGAGGTGGCTCACAATCTGGGATTTCAGAATGTTGTGACCATAGACATGCTGAGGGATGCCTATCCGCTTCAGGACATGGTGGATCACAACAGAAGACCCAAAGACATGGTTCCACCAAGTAAAGAGTTACCCCCGATAGAAGCCATCATTCTGTTTGGTGAGCCAGTCAGATGGGAGACCAACCTCCAGCTAATAATGGATGTGCTCTTAACCAATGGGAAGCCTGGGAATGCCCTGACAACACTGCAGTACCCTCACATTCCAGTGCTGGCCTGTAACATGGACCTGATGTGGGTGGCTGAGGCCAAGAACCCCAGGTTTGGTCACGGCATGTTTCTGGTGTGTCTGGAGAGTCTGTATAAGAAGGTGACTGGTTGTGAGCTGAAGTATGAAGCTCTGATTGGAAAGCCCAGTGTGGTGACCTATAACTATGCTGAGCTGCTCATCAGACAGCAGGCTGAGAGTCTGGGCTGGACTGAACCTGTGGAGAGACTCTACGCCATTGGtgacaacCCCATGGCAGACATCTACGGTGCCAACCTCTACAACCGCTACCTACAGTCCTGCCACCGCACCCGAGCCCTGATGCAGCTCGGAGGGGGGGAGCCTCAGAGCCAACCCCTGGAGGACCCCCACGAAATGACCTGTGCTGAGATGGGAGGAGTTACAGGGGTGTACGGGGGCGAGGAGCCCCTCCCTGTGGGGTGCAGCTCCATCCTGGTGTGTACGGGGGTGTATAGCCGGGACCAGCAGGAACTGCCCCCTGACCCCAGGCATACTGTTACAGAGCATCGGATCTTCCACGGTCACAGGGACTTCCGCTTTGACCCCAACCTGACCCAGCCATCCTTCATGGTGCAGGATGTGAAGGAGGCTGTGGAGCTGGTGTTCCAGCAGGAGGGATGGCCTCTGGAGTAGGGGCCCAAGTCTCAATACTGCTCTGTCCCCTGGTCACAGCACTGCTCTGTCCCCTGGTCACAGCACTGCTCTGTCCCCTGGTCACAGCACTGCTCTGTCCCCTGGTCACAGCACTGCTCTGTCCCCTGGTCACAGCACTGCTCTGTCCCCTGGTCACAGCACTGCTCTGTCCCCTGGTCACAGCACTGCTTGCCAAGTCGATTAACAGCAGCTCAATGTCTGGGTCTctgaggctgtgtttacacaggcagcccaattctgatttaTTTTCttatctttttcagagctgatcggATTGGACAAAAGAGAAATGAGTGTCAAGAAAATCTAAATggtgctgcctgtgtaaacacagcctctcTTTGGTTAGGACAGGGTCTAATAGTTGACATAGACCCCTCTGTGACCAAGAAACCTCTAAACATCCTCCTCAACCGCCTCACTCGGCCATGCTAGTACAGTCACTCATACAGCGAATTACATCGCACGTCTAGAATGTCTGCACATTTACTGTACTGCCATTGAGATTTCCTTAACTTTTACATTTCTGTTGCGTGTCCTGTTCTACGGAGTGTAGCATGCTGACTAGACCTGCCAAGTTCCGTGCACGAGCatttcaaaataaatgtatgcatgttattcaatcatttcatccaAACTGCACGCGGGTGTCTGCGTAGTCAGGTGCTATGCATAGAACTTTCAACTCACTGAATGTGAGGTTAACTAGGTTTCCCCTTTTGTGTTTTAATTTTCGACTTTTGTATTTCAAATGTGTCAATTCTACAATGATCCACAAAAAAAATACCTCGTTTATTTTTGCGTAAACTAACCCAATATTTATTTCCCAGAACAAATTGGCTAGCGAAATGTCTCAtgtgtttcgacctgtccccaaatgaataatTGATTTTGGTATTTTAATCTGCGTGTCATGAACGCGTCTGGTGGGGAGAAACAACATCAACATGTGCACGATGATGTAATGCTGTCTGTTGTGGCTATAATATTCTTAGTGGACTGAATACATAAAATACACTGATAGGCCATTTTACTTTACTGTGCTGGGTTAGCTTTTACAATATATTTATCTGTCTGCCATGCTATCCAGACTTGTTACAGGAACAACTTCATGCAAGTGACCAGTTTTAAGTCCAGGAATGTTCTTTGATGGACTCCACAATTGATGCAAGGCTAGTTGTTCCATTTACCATGAACTAAACAGGTGCAACATATCTGGCTGTGTTCAAGTAAGGTTTGGAGCGTCTTTCAATAGCCATTAGTATGTGAAGGCAGGCCATTGTGGGGATGTAAAGCATTTTGtggtatttaaaaatatatatttttatgtgatTGTTATGGAGTGTTTTATGCAGGGATGTCAACATTTTTAGCTATGTTCAATTGGCCAAAGGTTCTGAGGGAAAGATGTGACTGTGGAATTGTCATAAATGCAACACTGTATTTGACAAATTGAAGGACAATAAAGTGTTCATTGAAACCA
>TU2516421
CGACGGAAAGCAAGCTTGCCAACGCGTGGCCATCTGTTATTCATATGGCAGCTTGCTATCAAGTTTAGAGATGGCACACTTTTCACCTTCTATTGTCGTGTATGATATAGCTAGCTATGTAGTTCCTATAGCTAGTTAGTGCTTGGTAGTGTGTAAacacagcctctcTTTGGTTAGGACAGGGTCTAATAGTTGACATAGACCCCTCTGTGACCAAGAAACCTCTAAACATCCTCCTCAACCGCCTCACTCGGCCATGCTAGTACAGTCACTCATACAGCGAATTACATCGCACGTCTAGAATGTCTGCACATTTACTGTACTGCCATTGAGATTTCCTTAACTTTTACATTTCTGTTGCGTGTCCTGTTCTACGGAGTGTAGCATGCTGACTAGACCTGCCAAGTTCCGTGCACGAGCatttcaaaataaatgtatgcatgttattcaatcatttcatccaAACTGCACGCGGGTGTCTGCGTAGTCAGGTGCTATGCATAGAACTTTCAACTCACTGAATGTGAGGTTAACTAGGTTTCCCCTTTTGTGTTTTAATTTTCGACTTTTGTATTTCAAATGTGTCAATTCTACAATGATCCACAAAAAAAATACCTCGTTTATTTTTGCGTAAACTAACCCAATATTTATTTCCCAGAACAAATTGGCTAGCGAAATGTCTCAtgtgtttcgacctgtccccaaatgaataatTGATTTTGGTATTTTAATCTGCGTGTCATGAACGCGTCTGGTGGGGAGAAACAACATCAACATGTGCACGATGATGTAATGCTGTCTGTTGTGGCTATAATATTCTTAGTGGACTGAATACATAAAATACACTGATAGGCCATTTTACTTTACTGTGCTGGGTTAGCTTTTACAATATATTTATCTGTCTGCCATGCTATCCAGACTTGTTACAGGAACAACTTCATGCAAGTGACCAGTTTTAAGTCCAGGAATGTTCTTTGATGGACTCCACAATTGATGCAAGGCTAGTTGTTCCATTTACCATGAACTAAACAGGTGCAACATATCTGGCTGTGTTCAAGTAAGGTTTGGAGCGTCTTTCAATAGCCATTAGTATGTGAAGGCAGGCCATTGTGGGGATGTAAAGCATTTTGtggtatttaaaaatatatatttttatgtgatTGTTATGGAGTGTTTTATGCAGGGATGTCAACATTTTTAGCTATGTTCAATTGGCCAAAGGTTCTGAGGGAAAGATGTGACTGTGGAATTGTCATAAATGCAACACTGTATTTGACAAATTGAAGGACAATAAAGTGTTCATTGAAAC

Function

NR:

description
PREDICTED: cat eye syndrome critical region protein 5 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598762.2 False 3084 mRNA 0.48 8 10265335 10271358
TU2516421 True 1309 lncRNA 0.40 2 10265337 10271343

Neighbor

gene id symbol gene type direction distance location
slc15a5 slc15a5 coding downstream 13434 10228872 ~ 10251901 (-)
si:dkey-10o6.2 LOC106584635 coding downstream 78920 10180376 ~ 10186415 (-)
LOC110522731 LOC106584631 coding downstream 122808 10076243 ~ 10142527 (-)
rs13 LOC106584629 coding downstream 197309 10057069 ~ 10068026 (-)
LOC110521287 NA coding downstream 251858 9843724 ~ 10013477 (-)
ccdc77 ccdc77 coding upstream 211 10271569 ~ 10281015 (-)
LOC110521302 LOC106584590 coding upstream 205994 10477352 ~ 10595440 (-)
LOC110521303 LOC106584592 coding upstream 351201 10622559 ~ 10729404 (-)
LOC110521305 LOC106584593 coding upstream 460055 10731413 ~ 10768637 (-)
LOC110522734 celsr1 coding upstream 650983 10918587 ~ 11012095 (-)
G2199205 NA non-coding downstream 17697 10241655 ~ 10247638 (-)
G2199133 NA non-coding downstream 310955 9953423 ~ 9954380 (-)
G2199106 NA non-coding downstream 386129 9878742 ~ 9879206 (-)
G2199103 NA non-coding downstream 393361 9871110 ~ 9871974 (-)
G2199098 NA non-coding downstream 405426 9858700 ~ 9859909 (-)
G2199291 NA non-coding upstream 35574 10306932 ~ 10309132 (-)
G2199387 NA non-coding upstream 194741 10466099 ~ 10469967 (-)
G2199394 NA non-coding upstream 264532 10535890 ~ 10540667 (-)
G2199459 NA non-coding upstream 408886 10680244 ~ 10680702 (-)
G2199458 NA non-coding upstream 410259 10681617 ~ 10682184 (-)
G2199159 NA other downstream 266686 9997420 ~ 9998649 (-)
G2199158 NA other downstream 268180 9996725 ~ 9997155 (-)
LOC110522725 LOC106584670 other downstream 1139934 9119598 ~ 9125424 (-)
LOC110521266 LOC106584677 other downstream 1233670 9030457 ~ 9031665 (-)
G2197247 NA other downstream 1521704 8698540 ~ 8744360 (-)
G2199633 NA other upstream 743169 11014527 ~ 11014968 (-)
G2201542 NA other upstream 1977593 12248951 ~ 12249982 (-)
LOC110521346 LOC106584547 other upstream 2809238 13078925 ~ 13087584 (-)
LOC110521347 LOC106584546 other upstream 2826672 13094306 ~ 13103545 (-)

Expression


Co-expression Network