ccdc77 (ccdc77)


Basic Information

Item Value
gene id ccdc77
gene name ccdc77
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 10271569 ~ 10281015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598761.2
TCATTGTTGAAATACTGCCATCGGATATGCCACTTAAACATTTTGTACTGTTATCCATCTGTGTTAGCTGTCTTACGCAAGCAAATTTGACTGGCGAATGTTTTTGTGACTTGTTTGTGAAGTCAACATGATGGAGTCACCTCCAACAAAAGACAGGCAGACAGACCACACCCCTGGGGTGGAGGACTCTCCCCTGCCCCCCATCACTGAGCGCCTGGCCTACCTGCGCCCCTCCAGAGAGCTGCTGGAGTTCTACAGGGGGAAGATCGCCCAGTTTGATGGAGAACACGATGATCTGATGCAGATGCTGGAGAAGTACAGAGGCACCACAGAGGACCagCACAAGCTGCAGTGGGAGGTGCGACAGCGCGAAGGGGAGATATCTGAGCTGCAGAAGGCTTTGAGTGACATGCAGGTGTACCTCTTCCAGGAGAGGGAACAGGCGCTGCGTCTGTACGCAGAGAATGACAGACTCAAGATCAGaGAGCTGGAGGACAGGAAGAAAATCCAGCACCTGTTAGCCCTGGTGGGGCCAGACACTGGGGAGATCACCTACTTCCACCGTGACCCTCCACACAAGGTTAGCATAGCCCAGAAGGAACTAGAGCCCAGAATTCTGGATCATCGGAAGATGGCAAAGTCAAGAACTGGATCTGCAAAAGAGGGAAGCCGGACATCCAGATCAGAGGGAGTGGTGAATGGAGGAAGCCCAGAGCAGTACAGAAGAGACAACCAGACCTTACTACTACAGGTGGAGGCGCTGCAGGCTCAGATGGAGGAGCAGACTCGTTTGTCCAAAGAGCAGGTGGAGTCTCTGCTGGAGGACAGGAGGATCCACGTGGAGGAGGGACAGGTCCAGCACCAGAGAGACCAGGACCGCATCACTGTACTCACTGACAAGCTGGACCGGACCCAGAACCTGCTGTACGAGAGCACCAGGGACTTCCTACAGCTGAAGTTTGAGACGCGGGCCCACGAGAAGGGCTGGATGGTGGAGAAGGACCGGCTGCTGCGAGAGCTGGACTCAACCCAGGACCGTCTGAGGAAAGCCAGTGATGGTCATGGGAGGGAGCAGCCGGGACCAGGATCCAGAGGACACGGCAGCAGCATGGCCCTGCTTCTAACCCAGCCCCAGCCTGACACACAGCACGTCCACAGGGAAGAGCTCAGGACAATGCAGGAAGAGCTGAAGCAGGCCCACCGCCTGGCTGAGATGTACAGGGAGCAGTGTGTTACCCTGGAGACAGACCTGGCTCAGATCAGAGAGGAGGGGGACATGGGCAGGGAGATTTTCAAGGATCGGTCGGACAAGATGGCGAAGCGTCTTCAGATGACGACCCAGCGGTACGAGGCCCTGGAGAAGAGGAGGGCCATGGAGGTGGAGGGCTTCAAGACCGACATCAAACACCTCCGACAAAAACTCAAAGATGTGGAGAAACAGCTTTTCAAGgtcacCCTGAACGTGGGCCCGAATCAGGACCTGGCCATCCTACACGAAGTGCGTCAGACCAACGCTCGGACCAGGAAGGTCCAGGGGGAGCTGAAGACCCTGAAGGCCAAGATCTACGGCCTGGAGAACGACCTCCGATACAGCTGAGATTTTTTTAAAGCCCACTGGGGACCAGGGTACTGTTCAGTTGCCCACGCAACAGGAAATGTTTTGaaactgaataattttgcattgTTGTTGGACAATTTAACTTAGGACTCCCTACTCATCATGATCCTGTATTCCCCCTTTGACATACtaagttatatatatttttttgttgacaCCTGATGATATGAGATGCAGCACATGTGCTATCTAAAATGTCTcatgatttagaactttttttgtttgtttaggtTTTAGGCCAAGGAGACCTGGGTGTGTATGACATTACATTTTCTATTACATTGATACAGTAATTAAATACAAACAGAACAAGATGAACAATGTGCACATAAAAGTTCATTTTAGACAAACAGGTTTTCCGCTACTGATGTATCTATTGTGTGTTGCTATGAAAGACCGAGTGGGTGTTTCATTTTGATCAATAAAGATGTATTTTATGATTAA
>XM_021598760.2
ATAAAACAGTAGGTGGCAGTAGAGCTTCGCTACTCGAATCACACTGCACTTTTTTTTCTGCGAAGAAAGACTTTGAAAACTTCCGGGATCTAAAGACAGTTTGAAGATTCATGAAACAGTGAAAGGTCAACATGATGGAGTCACCTCCAACAAAAGACAGGCAGACAGACCACACCCCTGGGGTGGAGGACTCTCCCCTGCCCCCCATCACTGAGCGCCTGGCCTACCTGCGCCCCTCCAGAGAGCTGCTGGAGTTCTACAGGGGGAAGATCGCCCAGTTTGATGGAGAACACGATGATCTGATGCAGATGCTGGAGAAGTACAGAGGCACCACAGAGGACCagCACAAGCTGCAGTGGGAGGTGCGACAGCGCGAAGGGGAGATATCTGAGCTGCAGAAGGCTTTGAGTGACATGCAGGTGTACCTCTTCCAGGAGAGGGAACAGGCGCTGCGTCTGTACGCAGAGAATGACAGACTCAAGATCAGaGAGCTGGAGGACAGGAAGAAAATCCAGCACCTGTTAGCCCTGGTGGGGCCAGACACTGGGGAGATCACCTACTTCCACCGTGACCCTCCACACAAGGTTAGCATAGCCCAGAAGGAACTAGAGCCCAGAATTCTGGATCATCGGAAGATGGCAAAGTCAAGAACTGGATCTGCAAAAGAGGGAAGCCGGACATCCAGATCAGAGGGAGTGGTGAATGGAGGAAGCCCAGAGCAGTACAGAAGAGACAACCAGACCTTACTACTACAGGTGGAGGCGCTGCAGGCTCAGATGGAGGAGCAGACTCGTTTGTCCAAAGAGCAGGTGGAGTCTCTGCTGGAGGACAGGAGGATCCACGTGGAGGAGGGACAGGTCCAGCACCAGAGAGACCAGGACCGCATCACTGTACTCACTGACAAGCTGGACCGGACCCAGAACCTGCTGTACGAGAGCACCAGGGACTTCCTACAGCTGAAGTTTGAGACGCGGGCCCACGAGAAGGGCTGGATGGTGGAGAAGGACCGGCTGCTGCGAGAGCTGGACTCAACCCAGGACCGTCTGAGGAAAGCCAGTGATGGTCATGGGAGGGAGCAGCCGGGACCAGGATCCAGAGGACACGGCAGCAGCATGGCCCTGCTTCTAACCCAGCCCCAGCCTGACACACAGCACGTCCACAGGGAAGAGCTCAGGACAATGCAGGAAGAGCTGAAGCAGGCCCACCGCCTGGCTGAGATGTACAGGGAGCAGTGTGTTACCCTGGAGACAGACCTGGCTCAGATCAGAGAGGAGGGGGACATGGGCAGGGAGATTTTCAAGGATCGGTCGGACAAGATGGCGAAGCGTCTTCAGATGACGACCCAGCGGTACGAGGCCCTGGAGAAGAGGAGGGCCATGGAGGTGGAGGGCTTCAAGACCGACATCAAACACCTCCGACAAAAACTCAAAGATGTGGAGAAACAGCTTTTCAAGgtcacCCTGAACGTGGGCCCGAATCAGGACCTGGCCATCCTACACGAAGTGCGTCAGACCAACGCTCGGACCAGGAAGGTCCAGGGGGAGCTGAAGACCCTGAAGGCCAAGATCTACGGCCTGGAGAACGACCTCCGATACAGCTGAGATTTTTTTAAAGCCCACTGGGGACCAGGGTACTGTTCAGTTGCCCACGCAACAGGAAATGTTTTGaaactgaataattttgcattgTTGTTGGACAATTTAACTTAGGACTCCCTACTCATCATGATCCTGTATTCCCCCTTTGACATACtaagttatatatatttttttgttgacaCCTGATGATATGAGATGCAGCACATGTGCTATCTAAAATGTCTcatgatttagaactttttttgtttgtttaggtTTTAGGCCAAGGAGACCTGGGTGTGTATGACATTACATTTTCTATTACATTGATACAGTAATTAAATACAAACAGAACAAGATGAACAATGTGCACATAAAAGTTCATTTTAGACAAACAGGTTTTCCGCTACTGATGTATCTATTGTGTGTTGCTATGAAAGACCGAGTGGGTGTTTCATTTTGATCAATAAAGATGTATTTTATGATTAA

Function

symbol description
ccdc77 Predicted to be active in centrosome. Orthologous to human CCDC77 (coiled-coil domain containing 77).

NR:

description
coiled-coil domain-containing protein 77

GO: NA

KEGG:

id description
K16757 CCDC77; coiled-coil domain-containing protein 77

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598761.2 False 2062 mRNA 0.51 12 10271569 10280848
XM_021598760.2 True 2066 mRNA 0.51 12 10271569 10281015

Neighbor

gene id symbol gene type direction distance location
hdhd5 LOC100380646 coding downstream 211 10265335 ~ 10271358 (-)
slc15a5 slc15a5 coding downstream 19668 10228872 ~ 10251901 (-)
si:dkey-10o6.2 LOC106584635 coding downstream 85154 10180376 ~ 10186415 (-)
LOC110522731 LOC106584631 coding downstream 129042 10076243 ~ 10142527 (-)
rs13 LOC106584629 coding downstream 203543 10057069 ~ 10068026 (-)
LOC110521302 LOC106584590 coding upstream 196337 10477352 ~ 10595440 (-)
LOC110521303 LOC106584592 coding upstream 341544 10622559 ~ 10729404 (-)
LOC110521305 LOC106584593 coding upstream 450398 10731413 ~ 10768637 (-)
LOC110522734 celsr1 coding upstream 641326 10918587 ~ 11012095 (-)
gtse1 gtse1 coding upstream 735055 11016070 ~ 11020933 (-)
G2199205 NA non-coding downstream 23931 10241655 ~ 10247638 (-)
G2199133 NA non-coding downstream 317189 9953423 ~ 9954380 (-)
G2199106 NA non-coding downstream 392363 9878742 ~ 9879206 (-)
G2199103 NA non-coding downstream 399595 9871110 ~ 9871974 (-)
G2199291 NA non-coding upstream 25917 10306932 ~ 10309132 (-)
G2199387 NA non-coding upstream 185084 10466099 ~ 10469967 (-)
G2199394 NA non-coding upstream 254875 10535890 ~ 10540667 (-)
G2199459 NA non-coding upstream 399229 10680244 ~ 10680702 (-)
G2199458 NA non-coding upstream 400602 10681617 ~ 10682184 (-)
G2199159 NA other downstream 272920 9997420 ~ 9998649 (-)
G2199158 NA other downstream 274414 9996725 ~ 9997155 (-)
LOC110522725 LOC106584670 other downstream 1146168 9119598 ~ 9125424 (-)
LOC110521266 LOC106584677 other downstream 1239904 9030457 ~ 9031665 (-)
G2197247 NA other downstream 1527938 8698540 ~ 8744360 (-)
G2199633 NA other upstream 733512 11014527 ~ 11014968 (-)
G2201542 NA other upstream 1967936 12248951 ~ 12249982 (-)
LOC110521346 LOC106584547 other upstream 2799581 13078925 ~ 13087584 (-)
LOC110521347 LOC106584546 other upstream 2817015 13094306 ~ 13103545 (-)

Expression


Co-expression Network