Item | Value |
---|---|
gene id | LOC110521306 |
gene name | LOC106584595 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_050570.1 |
NCBI id | CM025857.1 |
chromosome length | 46327593 |
location | 10799756 ~ 10920504 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
receptor-type tyrosine-protein phosphatase eta-like |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036968573.1 | False | 12039 | mRNA | 0.45 | 48 | 10799756 | 10920504 |
TU2515724 | False | 2629 | TUCP | 0.39 | 2 | 10868361 | 10877789 |
TU2515730 | True | 1519 | lncRNA | 0.40 | 3 | 10885421 | 10889405 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110521301 | LOC106584589 | coding | upstream | 324193 | 10471852 ~ 10475563 (+) |
LOC110522733 | LOC106584588 | coding | upstream | 341100 | 10322109 ~ 10458656 (+) |
LOC110521300 | LOC106584586 | coding | upstream | 486699 | 10281372 ~ 10313057 (+) |
LOC118945815 | NA | coding | upstream | 494303 | 10298713 ~ 10305453 (+) |
LOC110521299 | LOC106584584 | coding | upstream | 534633 | 10260220 ~ 10265123 (+) |
LOC110521307 | LOC106584597 | coding | downstream | 784 | 10921288 ~ 10922316 (+) |
LOC110521310 | gramd4 | coding | downstream | 149400 | 11069904 ~ 11122397 (+) |
LOC110521313 | cerk | coding | downstream | 281179 | 11201683 ~ 11226086 (+) |
LOC118945803 | LOC106584602 | coding | downstream | 327952 | 11248456 ~ 11253726 (+) |
LOC118945779 | NA | coding | downstream | 333310 | 11253814 ~ 11254241 (+) |
G2198626 | NA | non-coding | upstream | 22447 | 10777106 ~ 10777309 (+) |
G2198598 | LOC106584593 | non-coding | upstream | 62504 | 10736012 ~ 10737252 (+) |
G2198583 | NA | non-coding | upstream | 87509 | 10711043 ~ 10712247 (+) |
G2198501 | LOC106584592 | non-coding | upstream | 173095 | 10602875 ~ 10626661 (+) |
G2198499 | NA | non-coding | upstream | 233908 | 10565603 ~ 10565848 (+) |
G2198687 | NA | non-coding | downstream | 11829 | 10932333 ~ 10932563 (+) |
G2198688 | NA | non-coding | downstream | 12492 | 10932996 ~ 10933327 (+) |
G2198700 | NA | non-coding | downstream | 31474 | 10951978 ~ 10952300 (+) |
G2198703 | NA | non-coding | downstream | 41543 | 10962047 ~ 10962470 (+) |
G2198722 | NA | non-coding | downstream | 74916 | 10995420 ~ 11001444 (+) |
G2198247 | NA | other | upstream | 575639 | 10221650 ~ 10224117 (+) |
G2197955 | NA | other | upstream | 1179469 | 9619867 ~ 9620287 (+) |
calcb | LOC100135819 | other | upstream | 1350103 | 9418139 ~ 9449834 (+) |
G2197055 | LOC106584658 | other | upstream | 2204248 | 8593374 ~ 8595508 (+) |
LOC110522717 | LOC106584678 | other | upstream | 2706947 | 7818281 ~ 8094067 (+) |
G2198837 | NA | other | downstream | 223709 | 11144213 ~ 11144672 (+) |
LOC110521323 | LOC106561036 | other | downstream | 815970 | 11683849 ~ 11796935 (+) |
G2202196 | NA | other | downstream | 2280634 | 13201138 ~ 13201491 (+) |
LOC110521355 | LOC106584515 | other | downstream | 2371732 | 13292190 ~ 13301806 (+) |
tnnt3a | LOC100136357 | other | downstream | 2515304 | 13435735 ~ 13462187 (+) |
G2198650 | NA | non-coding | upstream | 26670 | 10848547 ~ 10858751 (+) |
LOC110521306 | LOC106584595 | other | upstream | 7632 | 10799756 ~ 10920504 (+) |