LOC110522736 (LOC106584602)


Basic Information

Item Value
gene id LOC110522736
gene name LOC106584602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 11196257 ~ 11198563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969037.1
TGGAGAAACAactgatggagagggagggggagaggaagagagaacttGAGAGTCAGCTTGGAGAAGATATGAGAAAAAGAGAAGAGGAAAGAAAGTATGAGGAGGAAATGAAAATGAGGAAACTGGAAGACATGAAGAATGAATTGTTTGGAAAAATTAGAGagttggaggaggagaggaagagagaacttGAGAGTCAGCTTGGAGAAGATATGAGAAAAAGAGAAGAGGAAAGAAAGCATGAGGAGGAAATGAAAATGAGGAAACTGGAAGAGGACCTAACGAAAGAAAAGAGGCAGAGACAGATTGCAGAAGAAAATATGACACATATGGAGAAACAAAtgagagagctggaggagagggaggaggacaggaagagagatctTGAGAGTCAGATTAGATATGAGAAAAGAAAGCACGAAGAAGAAATAAAAATGAGGAAACTGGAAGAAATGAAGAATGAATTGTTTGGGAAAATGAGAAagttggaggaggagaggaagagagaacttGAGAGTCAGATTAGAGAAGAGAAAAGGAAGCACGAAGAGGAAATGAAAATTAGGAAACTGGAAGAGGACCTAATGAAACAAAAGAGGCAGAGACAGATTGCAGAAGAAAATATGACACATATGGAGAAACAAAtgagagagctggaggagaggggggaggacaggaagagagaacGTGAGAGTCAGATTAGAGAAGAGAAAATAAAGCACGAGGAGGCAATGAAAATGAGGAAACTGGAAGGCATGAAGAATGAAATGTTTGGAAAAATGAGAGagttggaggaggagagaaagagagaacttgAGAGTCAGATtagagaagagaaaagaaagcACGAGGAGGAAATTAAAATGAGGAAACTGGAAGACATGAAGAATGAAATGTTTGGAAAAAtgagagagttggaggagaggaTGAAAAAGATGGAAAGACAGCATGCAGAGAAGACCacgatggaggaggagaaggaggaaagaaAGGGGGTGGAAGACACAGTGAGGATGAAAGAGCTGAACAAGACAGCCTTGGATGTGTGGGAATTTCACGTTGGAAGTCATGAATGTCCGAAACACAGAAGTGATTCAGAATGTTCAGATTGTGATGACGGTAAAAGTGCCAAAGCACACCAGAAGAAGACAGACAAAGAGAAGAATGAAACGATGGAAGCACTCCTGACTGAGGAAAAATGTAacagtagtgatgatgatgatgatggtttcaCTGAGATGAAACAAAAGGATGGACATAAAAATATGCTTGTTGAGGAGAAGGTAACTTCAAATTACTGTCAGAATGATCAACCAGGAAAAGTCAAAGTTCAAAATGACCTGGCAGGTGATATAGACTGGTCAGAGAGTGACTACAGTGAGATTGAGGTAATAATCGACAGTGACACTGAGGACATTAGTGAAGAAATAAAGGAaacggatgaggaggaggaggttgaaGATAAGACAGATATTGAGAGTGATGTGAGAACAGTAAGAAATGTGATAAGAAGTGAATGTGAGGATGATAAGAGTGGGAAACCAAACATGAAGAAAGGCATGGTTGACAAAGACAATACGGACAACAACGTTGAGAAAGAGAAAACAACCCAAAGcaacacaaagagagaggagggtgagagaaaaGAGGTTCAAAgccaagacacagagacatacaaaacCAATGGAGCGACAGAATCTGACGAGCTCACTTTGGCTCCTGGAAAGGGGTCAGATAGCAATGACAGTGAGAGGGTCAAATCCAaccaagagaaagagaaggatgaCCAAAAGGACACAGGACAGTTAGAGAgtcaggaggagaagaaggaggacaGGATACTTgctggagcagagggagagactcAGCATCCTCAGGAAGACCAATCGGAAACAtgcaaagATTTTTCAATTTTCGCAGCGGCAATGGTTAAGATTCAGGGCCCAGACGAGGATCAACTAGCAGTTGAAGGAAAGACTAACAacactcagacagaccaggcagcAAAGGTCAAAGGTGAAATGGACCTGGACAATGACTGGTCAGAGAGTGACAGTGAGACTGCGGAAATTACAGCTGATTTtgagattgatgaggaaacagaCCAACCAGCAACGTGCGGAGGTAAGAAGACAGTCAGTGGAATTACAATGAGGAGTGCTGATCTTGTTTGACAGCATGTGAA

Function

NR:

description
golgin subfamily A member 6-like protein 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969037.1 True 2185 mRNA 0.42 2 11196257 11198563

Neighbor

gene id symbol gene type direction distance location
LOC110522735 LOC106584602 coding downstream 94 11188626 ~ 11196163 (-)
atp2b1b LOC106584599 coding downstream 125400 11021804 ~ 11070857 (-)
gtse1 gtse1 coding downstream 175324 11016070 ~ 11020933 (-)
LOC110522734 celsr1 coding downstream 184162 10918587 ~ 11012095 (-)
LOC110521305 LOC106584593 coding downstream 427620 10731413 ~ 10768637 (-)
LOC110521316 LOC106597951 coding upstream 130518 11329081 ~ 11331702 (-)
LOC110521317 LOC106597951 coding upstream 143455 11342018 ~ 11344639 (-)
LOC110521321 LOC106584576 coding upstream 451202 11649765 ~ 11656439 (-)
LOC110521324 brd1 coding upstream 736705 11935268 ~ 11949572 (-)
LOC110521326 LOC106584572 coding upstream 767552 11966115 ~ 11970167 (-)
G2199704 NA non-coding downstream 51567 11144365 ~ 11144690 (-)
G2199689 NA non-coding downstream 70449 11125602 ~ 11125808 (-)
G2199603 NA non-coding downstream 236727 10957269 ~ 10959530 (-)
G2199601 NA non-coding downstream 242213 10953784 ~ 10954044 (-)
G2199568 NA non-coding downstream 287440 10907659 ~ 10908817 (-)
G2199747 NA non-coding upstream 27916 11226479 ~ 11226789 (-)
G2199749 NA non-coding upstream 29660 11228223 ~ 11229295 (-)
G2199750 NA non-coding upstream 30815 11229378 ~ 11232079 (-)
G2199799 NA non-coding upstream 103325 11301888 ~ 11302112 (-)
G2199986 NA non-coding upstream 264571 11463134 ~ 11463662 (-)
G2199633 NA other downstream 181289 11014527 ~ 11014968 (-)
G2199159 NA other downstream 1197608 9997420 ~ 9998649 (-)
G2199158 NA other downstream 1199102 9996725 ~ 9997155 (-)
LOC110522725 LOC106584670 other downstream 2070856 9119598 ~ 9125424 (-)
G2201542 NA other upstream 1050388 12248951 ~ 12249982 (-)
LOC110521346 LOC106584547 other upstream 1882033 13078925 ~ 13087584 (-)
LOC110521347 LOC106584546 other upstream 1899467 13094306 ~ 13103545 (-)
urahb urah other upstream 2468651 13666900 ~ 13671199 (-)
si:ch211-106e7.2 LOC106584539 other upstream 2663941 13862396 ~ 13897713 (-)

Expression


Co-expression Network