LOC110521313 (cerk)


Basic Information

Item Value
gene id LOC110521313
gene name cerk
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 11201683 ~ 11226086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598796.2
GAATACGTTGTGACGCCATGCGTAATTTTCAGCCCTTCCCCTTTTGATGAATCCGCTATTCAATTGTGGCAGTCGAAAACAGCAACGTTGTTTCCTTATGTATAAAATGGTGCTCAGTAACCTGATAAATTACTAAAGAAATGCTTCGACTAAGATAATATTAATACGCTCTCTAAGTCTCTGGCTTACTGGTGAAGGCATGGATAAACAACCGAGGTTATTGGCATCCCAACTCTTCCTGAAAAACAGCGTCTTCGAAGTATCGTTAAACGGTGTGCTTCTGACATGGAAAGAGATTCCGGCCAATAAAAAAGTAGTTTCGGGCAGCATACATCACCCCTTCAAAGTCGGTAGCAGCCACAGCGTGTCCGTGTCTGAGATCCTAGCAGTCCGGGAGCTCGATGTGGATGGCGGGACCAAAGATGATGGCAGGTGGCAGAAAATGCCCCAGAAACTGACTGAAGCCTATCCATATGCATTCACAGTGTCCTATGTGGAGAGAGCAAGGCAGCACCGCTGGCAGTGTAGTGACGTCACCTTCCACTGTTCAGAGGGGGCGCTGCGTCAGCAGTGGATCCAGACCATCAGAGAGCAGCTCACAGCACTGACTAGCAGACCCAAGCATTTGCTGGTGTACATCAACCCTCATGGGGGCAAGCAGCAAGGCGAGTGCATTTATGAGCAGAAAGTCGCGCCTCTCTTCGCCTGTGCCTCCATCTCCACAGACGTGATTGTTACAGAGCATGCCAATCATGCCAGGGACCACCTGAAGACAGAGGCGGAGTTAAAGAAATATGATGGagtggtgtgtgtgggcGGGGACGGCATGTTCAGCGAGATAGTTCACGGCCTGGTCTCTCGAACACAGAGGGAAAACGGAGTGGACCAGAACAGCCCGGAGGAGAAGCTGGTACCCTGTAGTCTCCGCATCGGCATAATACCCGCAGGTTCAACGGACTGCATCTGCTATGCCACTGTCGGCATCAATGACCCTGTGACCTCAGCTTTACATGTCATAGTGGGAGACTCCCAGCCAATGGACGTGTGCTCGGTCCATCACAACAACACGTTCTTGAGGTATTCCAGCTCCCTGCTTGGATATGGTTTCTACGGCGACGTGCTGGCAGACAGCGAGAGGAAACGCTGGATGGGACCAGCCAGATACAACTTTTCAGGTTTTAAGACGTTTCTGACACATCACCACTATGAAGGGGCTGTGTCTTTTCTACCAGCAACTGACATACTGGGAACACCGCGAGACAAGACCAGGTGTAGAGCTGGGTGCTTCATATGCCAGCACGACGGGCAGCTGTATTCAGGGGATTCCCCAGAGGAATCCAAGACTGCTCCAGATGTCTCAGACAGAGAATATGAAATGGGGTGGGGGGTGGTCAGAGGGAAGTTCCTGGCCATCAACGCGGCCAGTATGAGCTGTGCCTGTCCCCGTAGCCCCAAGGGCCTGTCCCCCGCCGCCCACCTCGCTGACGGCACCACCGACCTCATCCTCGTACGCAAGTGCTCCCGGTTCAACTTCCTGCGCCACCTGCTACGCCACACCAGCAAAGACGACCAGTTTGACATGACCTTTGTAGAGGTGCACCGTGTGCGGCGCTTCCGCTTCACGCCACGCCACTGGCAAAACGACTCAGAGCTGGACCTGAGGGAGAACGGCAAGCAGCTCTTCAGCCAGATCTGCCGGGACCACCCGGCCTGCAGCTGCAGCCCTGCCTATAGCAGCTGGAACTGTGACGGCGAGATCCTCCCCCACGCTGCCATTGAAGTCGGAGTTCATTGCCAGTTGATCAAGCTGTTTACGCGAGGGATCGAAGAGCAGCCTTTGTTTGAGGACCTCGCCAACCCCCCGTGTGCACTCTAGGTCCCATCACCCCTCCGCTGCCCTACCCTATCAGTCACTGGAACAGTCCTACAGCGTTTCAAAGCCTCCCTCTGCTGTCACTTACCTTAGCCCTGTGCACTACCTTTCTCTAATGTACTTTCTGGGGCCATTTTGGAGGTCACAATTTCACAGGTCAAAGAGTGCTGGTATGTGGTACATTTACAGAGGTTCATTATCCACTATAGCGAAGAAGAAATCATGAACATTTTAAAAGAATGTACCCCCTTCCTTGCTATCCTTTTGCAATAAAGAGATGTTAACCAACACCTAACGTGCTGTTCAACATTTGTAGAACATCCGTTTGCACGTGTTGGAATGTATGTTGCTCCAAATGATGAAGAATTGTTACAaagctttgtttgtttgtttatccaTTTGGAGAAACCCAATATTAAAGGATGTTTGAATGTTTCTAGCT

Function

symbol description
cerk Predicted to enable ceramide kinase activity. Predicted to be involved in ceramide metabolic process and phosphorylation. Orthologous to human CERK (ceramide kinase).

NR:

description
ceramide kinase

GO: NA

KEGG:

id description
K04715 CERK; ceramide kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598796.2 True 2315 mRNA 0.51 13 11201683 11226086

Neighbor

gene id symbol gene type direction distance location
LOC110521310 gramd4 coding upstream 79286 11069904 ~ 11122397 (+)
LOC110521307 LOC106584597 coding upstream 279367 10921288 ~ 10922316 (+)
LOC110521306 LOC106584595 coding upstream 281179 10799756 ~ 10920504 (+)
LOC110521301 LOC106584589 coding upstream 726120 10471852 ~ 10475563 (+)
LOC110522733 LOC106584588 coding upstream 743027 10322109 ~ 10458656 (+)
LOC118945803 LOC106584602 coding downstream 22370 11248456 ~ 11253726 (+)
LOC118945779 NA coding downstream 27728 11253814 ~ 11254241 (+)
LOC110521314 NA coding downstream 33925 11260011 ~ 11261183 (+)
LOC118945769 NA coding downstream 40267 11266353 ~ 11273794 (+)
LOC110522737 NA coding downstream 50094 11276180 ~ 11278947 (+)
G2198832 NA non-coding upstream 62684 11138774 ~ 11138999 (+)
G2198830 NA non-coding upstream 63912 11137059 ~ 11137771 (+)
G2198829 NA non-coding upstream 64696 11136287 ~ 11136987 (+)
G2198828 NA non-coding upstream 65411 11135772 ~ 11136272 (+)
G2198827 NA non-coding upstream 65946 11135491 ~ 11135737 (+)
G2198891 NA non-coding downstream 412 11226498 ~ 11226716 (+)
G2198903 NA non-coding downstream 19326 11245412 ~ 11263099 (+)
G2199833 NA non-coding downstream 172196 11398282 ~ 11406693 (+)
G2199998 NA non-coding downstream 243177 11469263 ~ 11469714 (+)
G2200043 NA non-coding downstream 280076 11506162 ~ 11506401 (+)
G2198837 NA other upstream 57011 11144213 ~ 11144672 (+)
G2198247 NA other upstream 977566 10221650 ~ 10224117 (+)
G2197955 NA other upstream 1581396 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 1752030 9418139 ~ 9449834 (+)
LOC110521323 LOC106561036 other downstream 510388 11683849 ~ 11796935 (+)
G2202196 NA other downstream 1975052 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 2066150 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 2209722 13435735 ~ 13462187 (+)
G2203653 NA other downstream 3333361 14559447 ~ 14567103 (+)

Expression


Co-expression Network