LOC118945803 (LOC106584602)


Basic Information

Item Value
gene id LOC118945803
gene name LOC106584602
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 11248456 ~ 11253726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969161.1
GATTCAGGGCCCAGACGAGGATCAACTAGCAGTTGAAGGAAAGACTAACAacactcagacagaccaggcagcAAAGGTCAAAGGTGAAATGGACCTGGACAATGACTGGTCAGAGAGTGACAGTGAGACTGAGGAAATTACAGCTGATTTtgagattgatgaggaaacagaCCAACCAGCAACGTGCGGAGGTAAGAAGACAGTCAGTGGAATTACAATGAGGAGTGCTGATCTTGTTTGACAGCATGTGAAAATCATCACTAATATTTTATAATTGTAGGAAACTCCCATGAAATCATTAACACTTACCTTTTCACCCACATTTTCACACACCATTTTATTCAAATGTCAGATTACTCCATCTCTATTGCAGAGGAGGTTAAGATTCAGGACCCTGACAAGAATCAACCAGCAAAGCTCAAAGatTCCTCCATCTTCTTGGCTGGTGCTGAGGTCAAACAGACCCAGTGCAAAGATGTCTCCTTGGTTGCTGCAGCTGAGTCAAAGACTCTGAACCCTCAGGAGGAGCAGCCAGCAAAGTGTAAAGATTTGTCTGTGTTTGCTGCAGCTGTAGGAAAGACTCAGGACTCAGCAAAGGTCAAAGGTGAAATGGACCTGGATAATGACTGGTCAGAGAGTGACAGTGAGATTGAGGAAATTACAGCTGATTTtgagattgatgaggaaacagaCCAACCAGCAACGTGCGGAGAGGAGGTTAAGATTCAGGACCCTGACAAGAATCAACCAGCAAAGCTCAAAGatTCCTCCATCTTCTTGGCTGGTGCTGAGGTCAAACAGACCCAGTGCAAAGATGTCTCCTTGGTTGCTGCAGCTGAGTCAAAGACTCTGAACCCTCAGGAGGAGCAGCCAGCAAAGTGTAAAGATTTGTCTGTGTTTGCTGCAGCTGTAGGAAAGACTCAGGACTCAGCAAAGGTCAAAGGTGAAATGGACCTGGATAATGACTGGTCAGAGAGTGACAGTGAGATTGAGGAAATTACAGCTGATTTtgagattgatgaggaaacagaCCAACCAGCAAAGTGCGGAGGTAAGAAGGCAGTCAGTGGAATTACAATGAGGAGTGCTGATCTTGTTTGACAGCATGTGAAAATCATCACTAATATTTTATAATTGTAGGAAACTCCCATGAAATCATTAACACTTACCTTTTCACCCACATTTTCACACACCATTTTATTCAAATGTCAGATTACTCCATCTCTATTGCAGAGGAGGTTAAGATTCAGGACCCTGACAAGAATCAACCAGCAAAGCTCAAAGatTCCTCCATCTTCTTGGCTGGTGCTGAGGTCAAACAGACCCAGTGCAAAGATGTCTCCTTGGTTGCTGCAGCTGAGTCAAAGACTCTGAAACCTCAGGAGGAGCAGCCAGCAAAGTGTAAAGATTTGTCTGTGTTTGCTGCAGCTGTAGGAAAGACTCAGGACTCAGCAAAGGTCAAAGGTGAAATGGACCTGGATAATGACTGGTCAGAGAGTGACAGTGAGATTGAGGAAATTACAGCTGATTTtgagattgatgaggaaacagaCCAACCAGCAAAGTGCGGAGGTAAGAAGGCAGTCAGTGGAATTACAATGAGGAGTGCTGATC

Function

NR:

description
uncharacterized protein LOC110522737

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969161.1 True 1614 mRNA 0.44 11 11248456 11253726

Neighbor

gene id symbol gene type direction distance location
LOC110521313 cerk coding upstream 22370 11201683 ~ 11226086 (+)
LOC110521310 gramd4 coding upstream 126059 11069904 ~ 11122397 (+)
LOC110521307 LOC106584597 coding upstream 326140 10921288 ~ 10922316 (+)
LOC110521306 LOC106584595 coding upstream 327952 10799756 ~ 10920504 (+)
LOC110521301 LOC106584589 coding upstream 772893 10471852 ~ 10475563 (+)
LOC118945779 NA coding downstream 88 11253814 ~ 11254241 (+)
LOC110521314 NA coding downstream 6285 11260011 ~ 11261183 (+)
LOC118945769 NA coding downstream 12627 11266353 ~ 11273794 (+)
LOC110522737 NA coding downstream 22454 11276180 ~ 11278947 (+)
LOC110520942 NA coding downstream 31258 11284984 ~ 11285302 (+)
G2198891 NA non-coding upstream 21740 11226498 ~ 11226716 (+)
G2198832 NA non-coding upstream 109457 11138774 ~ 11138999 (+)
G2198830 NA non-coding upstream 110685 11137059 ~ 11137771 (+)
G2198829 NA non-coding upstream 111469 11136287 ~ 11136987 (+)
G2198828 NA non-coding upstream 112184 11135772 ~ 11136272 (+)
G2199833 NA non-coding downstream 144556 11398282 ~ 11406693 (+)
G2199998 NA non-coding downstream 215537 11469263 ~ 11469714 (+)
G2200043 NA non-coding downstream 252436 11506162 ~ 11506401 (+)
G2200065 NA non-coding downstream 265200 11518926 ~ 11519133 (+)
G2200066 NA non-coding downstream 265428 11519154 ~ 11519418 (+)
G2198837 NA other upstream 103784 11144213 ~ 11144672 (+)
G2198247 NA other upstream 1024339 10221650 ~ 10224117 (+)
G2197955 NA other upstream 1628169 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 1798803 9418139 ~ 9449834 (+)
LOC110521323 LOC106561036 other downstream 482748 11683849 ~ 11796935 (+)
G2202196 NA other downstream 1947412 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 2038510 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 2182082 13435735 ~ 13462187 (+)
G2203653 NA other downstream 3305721 14559447 ~ 14567103 (+)

Expression


Co-expression Network