LOC110521319 (LOC106597951)


Basic Information

Item Value
gene id LOC110521319
gene name LOC106597951
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 11408759 ~ 11411420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598801.2
TGGAAGATCATTCTGTAAATCAAACAAGGGGTGGTCAAACTAAGACAAAGAGATACAAAATGGCAGTTCAGTAACATTGTGGTTGTTGTTAACATATACGAATTGTCAAGAAATATATAACGTAGAGGGAAAATAAACAAATTATGATCAAAATAGAGAACAATGGAATTTTGTATTAAAATCCTTCTGCTTCTTACCGTTAGCTGTTTAGCTAAAGTTGAGAAGATTTTTCGGGGCCAAGAATCACCCAGTCAAGCTTCCCATGCCCCTGGGAGATTTGTTCCACAGTACAGGCCTGCACTAGAACCAGCCAGCTTTCAACTAAGGCCTGTGCAATGGCCCGCCAGGGTCCAGAGACCGACGCAAGTTCAAAACCCTTTCCTCCAGTCAAAGCAGACCTTCAATGAGCCTTTGACCTGGAGATATCCTGAAGATCCAGTCAAAGAGGTGCAGTTGGCTATTGATGAGCAGAGACCGCTGCCTGTGCCTGCCAGTAGCATTGCAGTTCAATGTGGGGTGAATGCTGCCCATGTGGAAGTCAAGCGAGATCTGCTCGGTATAGGCCAACTCATTCACCCAGCGGATCTCTCCCTGGGAGGCTGTGCTGTCACCGGGGAGGATGTTTCCGCTCAAGTGCTGTTCTTCGACACGGAGCTGCACGGATGTGGCAGCACACTGACGATGACTGAGGATTCACTTGTCTATGTCTTCACACTCCGTTATACACCAGCCACCCTGGGCAGCAGCCCCATTGTTCGGACTAGAGAAGTGGTGGTCTGGGTTGAGTGCCACTATCAAAGAAAGCATGATGTGAGCAGCGGTTCAGTGAAGCCCACCTGGAATCCCTATGCCTCCACTATGGTTGCAGAGGAGCTCCTCTACTTCTCCCTGAGGCTAATGACTGACAACTGGCAGTTGGAGAGACCCAGCAAAGAGTACGTCCTTGGAGATAATATTAACTTTGAAGCTTCTGTCGTCCAGTTCTTCCATGTGCCCCTCCGAGTCTTTGTGGACAACTGTGTAGCCACAGTCATCCCAAACGCCAACACTGTCCCAAGATATGCCTTCATCGAGAAGCGTGGTTGTCTGGTCGACACCAAGCTGACAGGCTCCAGGTCCCAGTTCATACCTCGCACCATGGATGACACGCTCCAGTTCCAGATCAAAGCCTTTAGGTTTCATGTTGTGAACACTGGCTCACTTTACGTTACCTGCCTCCTGAAAGCCACATCCGCTTCATCCCCTATTGATCATGAGAACAAGGCTTGTTCCTTCTCAAATGGATGGCGCGAGGCCAGTAAGAAAGACCAGGTGTGTGGCTGTTGTGACACAGACTGTGGCATGAGAAGGGAACCGGATCCAGGTTTTCAGTGGGAGCAGGACATTTCTGTTGGTCCTCTCAACATAAAGGAAAAGCTTCTTGACTGATGGTGTAATGCTCAACTGGACTGGCTTCCCTGCCCAAATGCATTCTGGATGATGAAAAATATATCTAGATGAA

Function

NR:

description
zona pellucida sperm-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598801.2 True 1501 mRNA 0.49 8 11408759 11411420

Neighbor

gene id symbol gene type direction distance location
LOC110520942 NA coding upstream 123457 11284984 ~ 11285302 (+)
LOC110522737 NA coding upstream 129812 11276180 ~ 11278947 (+)
LOC118945769 NA coding upstream 134965 11266353 ~ 11273794 (+)
LOC110521314 NA coding upstream 147576 11260011 ~ 11261183 (+)
LOC118945779 NA coding upstream 154518 11253814 ~ 11254241 (+)
LOC110521318 LOC106597951 coding downstream 7349 11418769 ~ 11421401 (+)
LOC110521320 LOC106584577 coding downstream 181878 11593298 ~ 11594361 (+)
LOC110521322 LOC106584576 coding downstream 262319 11673739 ~ 11681317 (+)
LOC110521323 LOC106561036 coding downstream 272429 11683849 ~ 11796935 (+)
LOC110521327 LOC106584571 coding downstream 609815 12021235 ~ 12023570 (+)
G2199833 NA non-coding upstream 2066 11398282 ~ 11406693 (+)
G2198903 NA non-coding upstream 145660 11245412 ~ 11263099 (+)
G2198891 NA non-coding upstream 182043 11226498 ~ 11226716 (+)
G2198832 NA non-coding upstream 269760 11138774 ~ 11138999 (+)
G2198830 NA non-coding upstream 270988 11137059 ~ 11137771 (+)
G2199998 NA non-coding downstream 57843 11469263 ~ 11469714 (+)
G2200043 NA non-coding downstream 94742 11506162 ~ 11506401 (+)
G2200065 NA non-coding downstream 107506 11518926 ~ 11519133 (+)
G2200066 NA non-coding downstream 107734 11519154 ~ 11519418 (+)
G2200291 NA non-coding downstream 389858 11801278 ~ 11801513 (+)
G2198837 NA other upstream 264087 11144213 ~ 11144672 (+)
LOC110521306 LOC106584595 other upstream 530970 10799756 ~ 10920504 (+)
G2198247 NA other upstream 1184642 10221650 ~ 10224117 (+)
G2197955 NA other upstream 1788472 9619867 ~ 9620287 (+)
calcb LOC100135819 other upstream 1959106 9418139 ~ 9449834 (+)
G2202196 NA other downstream 1789718 13201138 ~ 13201491 (+)
LOC110521355 LOC106584515 other downstream 1880816 13292190 ~ 13301806 (+)
tnnt3a LOC100136357 other downstream 2024388 13435735 ~ 13462187 (+)
G2203653 NA other downstream 3148027 14559447 ~ 14567103 (+)

Expression


Co-expression Network